Experiment: R2A with Zinc 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03645 and CA265_RS03650 are separated by 70 nucleotides CA265_RS03650 and CA265_RS03655 are separated by 68 nucleotides CA265_RS03655 and CA265_RS03660 are separated by 29 nucleotides
CA265_RS03645: CA265_RS03645 - L,D-transpeptidase, at 870,738 to 872,300
_RS03645
CA265_RS03650: CA265_RS03650 - NUDIX hydrolase, at 872,371 to 873,063
_RS03650
CA265_RS03655: CA265_RS03655 - phosphoribosylpyrophosphate synthetase, at 873,132 to 873,965
_RS03655
CA265_RS03660: CA265_RS03660 - hypothetical protein, at 873,995 to 875,047
_RS03660
Position (kb) 872
873
874 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 871.379 kb on - strand, within CA265_RS03645 at 871.464 kb on + strand, within CA265_RS03645 at 871.464 kb on + strand, within CA265_RS03645 at 871.465 kb on - strand, within CA265_RS03645 at 871.465 kb on - strand, within CA265_RS03645 at 871.522 kb on + strand, within CA265_RS03645 at 871.527 kb on - strand, within CA265_RS03645 at 871.575 kb on - strand, within CA265_RS03645 at 871.741 kb on - strand, within CA265_RS03645 at 871.744 kb on - strand, within CA265_RS03645 at 871.744 kb on - strand, within CA265_RS03645 at 871.833 kb on - strand, within CA265_RS03645 at 871.920 kb on + strand, within CA265_RS03645 at 871.937 kb on + strand, within CA265_RS03645 at 871.992 kb on - strand, within CA265_RS03645 at 872.043 kb on + strand, within CA265_RS03645 at 872.044 kb on - strand, within CA265_RS03645 at 872.085 kb on - strand, within CA265_RS03645 at 872.085 kb on - strand, within CA265_RS03645 at 872.087 kb on + strand, within CA265_RS03645 at 872.088 kb on - strand, within CA265_RS03645 at 872.096 kb on - strand, within CA265_RS03645 at 872.139 kb on - strand, within CA265_RS03645 at 872.202 kb on + strand at 872.203 kb on - strand at 872.203 kb on - strand at 872.356 kb on + strand at 872.356 kb on + strand at 872.441 kb on + strand, within CA265_RS03650 at 872.472 kb on - strand, within CA265_RS03650 at 872.490 kb on - strand, within CA265_RS03650 at 872.534 kb on + strand, within CA265_RS03650 at 872.607 kb on + strand, within CA265_RS03650 at 872.608 kb on - strand, within CA265_RS03650 at 872.648 kb on - strand, within CA265_RS03650 at 872.660 kb on + strand, within CA265_RS03650 at 872.754 kb on + strand, within CA265_RS03650 at 872.826 kb on - strand, within CA265_RS03650 at 872.867 kb on - strand, within CA265_RS03650 at 872.950 kb on - strand, within CA265_RS03650 at 873.013 kb on + strand at 873.137 kb on - strand at 873.222 kb on - strand, within CA265_RS03655 at 873.261 kb on - strand, within CA265_RS03655 at 873.309 kb on - strand, within CA265_RS03655 at 873.311 kb on + strand, within CA265_RS03655 at 873.312 kb on - strand, within CA265_RS03655 at 873.312 kb on - strand, within CA265_RS03655 at 873.359 kb on + strand, within CA265_RS03655 at 873.366 kb on + strand, within CA265_RS03655 at 873.438 kb on - strand, within CA265_RS03655 at 873.441 kb on - strand, within CA265_RS03655 at 873.522 kb on - strand, within CA265_RS03655 at 873.553 kb on + strand, within CA265_RS03655 at 873.584 kb on + strand, within CA265_RS03655 at 873.584 kb on + strand, within CA265_RS03655 at 873.587 kb on - strand, within CA265_RS03655 at 873.656 kb on - strand, within CA265_RS03655 at 873.656 kb on - strand, within CA265_RS03655 at 873.710 kb on - strand, within CA265_RS03655 at 873.710 kb on - strand, within CA265_RS03655 at 873.710 kb on - strand, within CA265_RS03655 at 873.710 kb on - strand, within CA265_RS03655 at 873.749 kb on - strand, within CA265_RS03655 at 873.755 kb on + strand, within CA265_RS03655 at 873.826 kb on - strand, within CA265_RS03655 at 873.829 kb on + strand, within CA265_RS03655 at 873.829 kb on + strand, within CA265_RS03655 at 873.830 kb on - strand, within CA265_RS03655 at 873.899 kb on + strand at 873.943 kb on + strand at 873.969 kb on + strand at 873.974 kb on - strand at 873.982 kb on + strand at 873.983 kb on - strand at 874.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM remove 871,379 - CA265_RS03645 0.41 -0.8 871,464 + CA265_RS03645 0.46 +0.0 871,464 + CA265_RS03645 0.46 -0.5 871,465 - CA265_RS03645 0.47 -0.6 871,465 - CA265_RS03645 0.47 -1.5 871,522 + CA265_RS03645 0.50 -1.6 871,527 - CA265_RS03645 0.50 -0.9 871,575 - CA265_RS03645 0.54 -0.5 871,741 - CA265_RS03645 0.64 +0.2 871,744 - CA265_RS03645 0.64 -1.2 871,744 - CA265_RS03645 0.64 +0.0 871,833 - CA265_RS03645 0.70 -1.1 871,920 + CA265_RS03645 0.76 -0.7 871,937 + CA265_RS03645 0.77 -0.1 871,992 - CA265_RS03645 0.80 -0.3 872,043 + CA265_RS03645 0.83 -1.3 872,044 - CA265_RS03645 0.84 +0.2 872,085 - CA265_RS03645 0.86 -0.5 872,085 - CA265_RS03645 0.86 -1.5 872,087 + CA265_RS03645 0.86 -1.0 872,088 - CA265_RS03645 0.86 -0.8 872,096 - CA265_RS03645 0.87 -1.5 872,139 - CA265_RS03645 0.90 -0.4 872,202 + -1.7 872,203 - +0.0 872,203 - +0.2 872,356 + -0.1 872,356 + +0.5 872,441 + CA265_RS03650 0.10 -4.3 872,472 - CA265_RS03650 0.15 -3.6 872,490 - CA265_RS03650 0.17 -3.2 872,534 + CA265_RS03650 0.24 -2.5 872,607 + CA265_RS03650 0.34 -3.7 872,608 - CA265_RS03650 0.34 -2.1 872,648 - CA265_RS03650 0.40 -0.7 872,660 + CA265_RS03650 0.42 -2.5 872,754 + CA265_RS03650 0.55 -3.3 872,826 - CA265_RS03650 0.66 -1.4 872,867 - CA265_RS03650 0.72 -3.0 872,950 - CA265_RS03650 0.84 -3.6 873,013 + -2.4 873,137 - +0.8 873,222 - CA265_RS03655 0.11 +0.1 873,261 - CA265_RS03655 0.15 +0.3 873,309 - CA265_RS03655 0.21 +2.5 873,311 + CA265_RS03655 0.21 -1.2 873,312 - CA265_RS03655 0.22 -0.1 873,312 - CA265_RS03655 0.22 +0.1 873,359 + CA265_RS03655 0.27 -1.4 873,366 + CA265_RS03655 0.28 -1.1 873,438 - CA265_RS03655 0.37 -0.4 873,441 - CA265_RS03655 0.37 -0.2 873,522 - CA265_RS03655 0.47 -0.0 873,553 + CA265_RS03655 0.50 -3.9 873,584 + CA265_RS03655 0.54 +0.3 873,584 + CA265_RS03655 0.54 -1.7 873,587 - CA265_RS03655 0.55 +0.3 873,656 - CA265_RS03655 0.63 +1.1 873,656 - CA265_RS03655 0.63 -0.8 873,710 - CA265_RS03655 0.69 -0.5 873,710 - CA265_RS03655 0.69 +1.2 873,710 - CA265_RS03655 0.69 -0.0 873,710 - CA265_RS03655 0.69 -0.5 873,749 - CA265_RS03655 0.74 +0.1 873,755 + CA265_RS03655 0.75 -1.4 873,826 - CA265_RS03655 0.83 -0.3 873,829 + CA265_RS03655 0.84 -2.0 873,829 + CA265_RS03655 0.84 +1.2 873,830 - CA265_RS03655 0.84 +0.1 873,899 + -1.2 873,943 + -1.0 873,969 + -0.4 873,974 - -1.0 873,982 + -1.0 873,983 - +0.4 874,033 - -0.3
Or see this region's nucleotide sequence