Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03255

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03245 and CA265_RS03250 overlap by 4 nucleotidesCA265_RS03250 and CA265_RS03255 are separated by 251 nucleotidesCA265_RS03255 and CA265_RS03260 are separated by 80 nucleotidesCA265_RS03260 and CA265_RS03265 are separated by 3 nucleotides CA265_RS03245: CA265_RS03245 - two-component sensor histidine kinase, at 797,039 to 797,824 _RS03245 CA265_RS03250: CA265_RS03250 - DNA-binding response regulator, at 797,821 to 798,453 _RS03250 CA265_RS03255: CA265_RS03255 - glycerophosphodiester phosphodiesterase, at 798,705 to 799,625 _RS03255 CA265_RS03260: CA265_RS03260 - multidrug ABC transporter ATP-binding protein, at 799,706 to 800,413 _RS03260 CA265_RS03265: CA265_RS03265 - hypothetical protein, at 800,417 to 800,959 _RS03265 Position (kb) 798 799 800Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 797.712 kb on + strand, within CA265_RS03245at 797.713 kb on - strand, within CA265_RS03245at 797.797 kb on + strandat 797.798 kb on - strandat 797.834 kb on + strandat 797.914 kb on + strand, within CA265_RS03250at 797.914 kb on + strand, within CA265_RS03250at 797.965 kb on - strand, within CA265_RS03250at 797.965 kb on - strand, within CA265_RS03250at 797.994 kb on + strand, within CA265_RS03250at 797.995 kb on - strand, within CA265_RS03250at 797.997 kb on + strand, within CA265_RS03250at 797.998 kb on - strand, within CA265_RS03250at 797.998 kb on - strand, within CA265_RS03250at 798.027 kb on - strand, within CA265_RS03250at 798.102 kb on + strand, within CA265_RS03250at 798.103 kb on - strand, within CA265_RS03250at 798.190 kb on - strand, within CA265_RS03250at 798.320 kb on - strand, within CA265_RS03250at 798.322 kb on - strand, within CA265_RS03250at 798.451 kb on + strandat 798.458 kb on + strandat 798.458 kb on + strandat 798.495 kb on + strandat 798.510 kb on + strandat 798.511 kb on - strandat 798.522 kb on - strandat 798.540 kb on - strandat 798.548 kb on + strandat 798.548 kb on + strandat 798.552 kb on - strandat 798.555 kb on + strandat 798.555 kb on + strandat 798.556 kb on - strandat 798.556 kb on - strandat 798.560 kb on - strandat 798.627 kb on - strandat 798.735 kb on - strandat 798.735 kb on - strandat 798.784 kb on - strandat 798.784 kb on - strandat 798.784 kb on - strandat 798.785 kb on + strandat 798.798 kb on - strand, within CA265_RS03255at 798.812 kb on - strand, within CA265_RS03255at 798.964 kb on - strand, within CA265_RS03255at 798.990 kb on - strand, within CA265_RS03255at 799.050 kb on + strand, within CA265_RS03255at 799.061 kb on - strand, within CA265_RS03255at 799.071 kb on - strand, within CA265_RS03255at 799.121 kb on - strand, within CA265_RS03255at 799.129 kb on + strand, within CA265_RS03255at 799.129 kb on + strand, within CA265_RS03255at 799.130 kb on - strand, within CA265_RS03255at 799.130 kb on - strand, within CA265_RS03255at 799.133 kb on - strand, within CA265_RS03255at 799.251 kb on + strand, within CA265_RS03255at 799.251 kb on + strand, within CA265_RS03255at 799.252 kb on - strand, within CA265_RS03255at 799.252 kb on - strand, within CA265_RS03255at 799.276 kb on + strand, within CA265_RS03255at 799.277 kb on - strand, within CA265_RS03255at 799.342 kb on + strand, within CA265_RS03255at 799.343 kb on - strand, within CA265_RS03255at 799.375 kb on + strand, within CA265_RS03255at 799.376 kb on - strand, within CA265_RS03255at 799.391 kb on - strand, within CA265_RS03255at 799.420 kb on - strand, within CA265_RS03255at 799.440 kb on - strand, within CA265_RS03255at 799.451 kb on - strand, within CA265_RS03255at 799.506 kb on + strand, within CA265_RS03255at 799.510 kb on - strand, within CA265_RS03255at 799.536 kb on - strandat 799.587 kb on - strandat 799.591 kb on - strandat 799.593 kb on - strandat 799.614 kb on + strandat 799.616 kb on + strandat 799.619 kb on + strandat 799.619 kb on + strandat 799.619 kb on + strandat 799.676 kb on + strandat 799.677 kb on - strandat 799.684 kb on + strandat 799.685 kb on - strandat 799.732 kb on + strandat 799.825 kb on + strand, within CA265_RS03260at 799.831 kb on + strand, within CA265_RS03260at 799.843 kb on + strand, within CA265_RS03260at 799.843 kb on + strand, within CA265_RS03260at 799.861 kb on - strand, within CA265_RS03260at 799.915 kb on + strand, within CA265_RS03260at 799.915 kb on + strand, within CA265_RS03260at 799.934 kb on - strand, within CA265_RS03260at 799.964 kb on + strand, within CA265_RS03260at 799.972 kb on + strand, within CA265_RS03260at 799.972 kb on + strand, within CA265_RS03260at 799.973 kb on - strand, within CA265_RS03260at 799.973 kb on - strand, within CA265_RS03260at 799.973 kb on - strand, within CA265_RS03260at 799.976 kb on + strand, within CA265_RS03260at 799.976 kb on + strand, within CA265_RS03260at 799.977 kb on - strand, within CA265_RS03260at 800.021 kb on - strand, within CA265_RS03260at 800.021 kb on - strand, within CA265_RS03260at 800.033 kb on - strand, within CA265_RS03260at 800.235 kb on + strand, within CA265_RS03260at 800.257 kb on + strand, within CA265_RS03260at 800.257 kb on + strand, within CA265_RS03260at 800.258 kb on - strand, within CA265_RS03260at 800.303 kb on - strand, within CA265_RS03260at 800.303 kb on - strand, within CA265_RS03260at 800.421 kb on - strandat 800.473 kb on + strand, within CA265_RS03265at 800.521 kb on - strand, within CA265_RS03265at 800.578 kb on - strand, within CA265_RS03265at 800.578 kb on - strand, within CA265_RS03265at 800.596 kb on - strand, within CA265_RS03265

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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797,712 + CA265_RS03245 0.86 -0.3
797,713 - CA265_RS03245 0.86 +0.2
797,797 + -1.4
797,798 - -0.2
797,834 + -0.9
797,914 + CA265_RS03250 0.15 -1.1
797,914 + CA265_RS03250 0.15 -0.2
797,965 - CA265_RS03250 0.23 +0.2
797,965 - CA265_RS03250 0.23 -1.4
797,994 + CA265_RS03250 0.27 +0.2
797,995 - CA265_RS03250 0.27 +1.1
797,997 + CA265_RS03250 0.28 -0.3
797,998 - CA265_RS03250 0.28 -0.4
797,998 - CA265_RS03250 0.28 -1.7
798,027 - CA265_RS03250 0.33 +0.3
798,102 + CA265_RS03250 0.44 +0.2
798,103 - CA265_RS03250 0.45 +0.3
798,190 - CA265_RS03250 0.58 +0.4
798,320 - CA265_RS03250 0.79 +0.3
798,322 - CA265_RS03250 0.79 -0.2
798,451 + -1.0
798,458 + +0.1
798,458 + -0.4
798,495 + -0.9
798,510 + -1.3
798,511 - -0.8
798,522 - -2.2
798,540 - +0.1
798,548 + +2.2
798,548 + -2.2
798,552 - -1.2
798,555 + -0.9
798,555 + +0.5
798,556 - -1.0
798,556 - +0.5
798,560 - -0.5
798,627 - -0.2
798,735 - +2.9
798,735 - +3.1
798,784 - +3.6
798,784 - +3.1
798,784 - +2.6
798,785 + +0.6
798,798 - CA265_RS03255 0.10 +2.7
798,812 - CA265_RS03255 0.12 +0.4
798,964 - CA265_RS03255 0.28 +0.3
798,990 - CA265_RS03255 0.31 +2.9
799,050 + CA265_RS03255 0.37 -1.1
799,061 - CA265_RS03255 0.39 +0.8
799,071 - CA265_RS03255 0.40 +1.3
799,121 - CA265_RS03255 0.45 +0.8
799,129 + CA265_RS03255 0.46 -0.8
799,129 + CA265_RS03255 0.46 +1.1
799,130 - CA265_RS03255 0.46 +1.6
799,130 - CA265_RS03255 0.46 -0.2
799,133 - CA265_RS03255 0.46 -1.3
799,251 + CA265_RS03255 0.59 +0.6
799,251 + CA265_RS03255 0.59 -0.2
799,252 - CA265_RS03255 0.59 +2.1
799,252 - CA265_RS03255 0.59 +1.8
799,276 + CA265_RS03255 0.62 -0.6
799,277 - CA265_RS03255 0.62 -0.9
799,342 + CA265_RS03255 0.69 +0.3
799,343 - CA265_RS03255 0.69 -0.3
799,375 + CA265_RS03255 0.73 +0.5
799,376 - CA265_RS03255 0.73 +1.2
799,391 - CA265_RS03255 0.74 +0.3
799,420 - CA265_RS03255 0.78 +0.9
799,440 - CA265_RS03255 0.80 +0.1
799,451 - CA265_RS03255 0.81 -1.5
799,506 + CA265_RS03255 0.87 +0.7
799,510 - CA265_RS03255 0.87 +0.8
799,536 - -0.7
799,587 - +0.8
799,591 - +1.0
799,593 - +0.4
799,614 + -0.6
799,616 + -1.9
799,619 + +0.2
799,619 + +1.6
799,619 + +0.4
799,676 + -0.2
799,677 - -0.8
799,684 + +1.2
799,685 - +0.8
799,732 + +2.2
799,825 + CA265_RS03260 0.17 +3.2
799,831 + CA265_RS03260 0.18 +2.1
799,843 + CA265_RS03260 0.19 +2.4
799,843 + CA265_RS03260 0.19 +4.0
799,861 - CA265_RS03260 0.22 +3.5
799,915 + CA265_RS03260 0.30 +2.3
799,915 + CA265_RS03260 0.30 +2.6
799,934 - CA265_RS03260 0.32 +1.9
799,964 + CA265_RS03260 0.36 +3.1
799,972 + CA265_RS03260 0.38 +1.9
799,972 + CA265_RS03260 0.38 +3.7
799,973 - CA265_RS03260 0.38 +2.3
799,973 - CA265_RS03260 0.38 +3.1
799,973 - CA265_RS03260 0.38 +2.7
799,976 + CA265_RS03260 0.38 +2.1
799,976 + CA265_RS03260 0.38 +3.8
799,977 - CA265_RS03260 0.38 +2.0
800,021 - CA265_RS03260 0.44 +3.0
800,021 - CA265_RS03260 0.44 +3.3
800,033 - CA265_RS03260 0.46 +2.3
800,235 + CA265_RS03260 0.75 +3.8
800,257 + CA265_RS03260 0.78 +2.2
800,257 + CA265_RS03260 0.78 +3.6
800,258 - CA265_RS03260 0.78 +0.2
800,303 - CA265_RS03260 0.84 +2.3
800,303 - CA265_RS03260 0.84 +2.8
800,421 - +0.4
800,473 + CA265_RS03265 0.10 +0.4
800,521 - CA265_RS03265 0.19 -0.3
800,578 - CA265_RS03265 0.30 +0.3
800,578 - CA265_RS03265 0.30 -2.7
800,596 - CA265_RS03265 0.33 +1.9

Or see this region's nucleotide sequence