Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01570

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01555 and CA265_RS01560 are separated by 0 nucleotidesCA265_RS01560 and CA265_RS01565 are separated by 2 nucleotidesCA265_RS01565 and CA265_RS01570 are separated by 3 nucleotidesCA265_RS01570 and CA265_RS01575 are separated by 15 nucleotides CA265_RS01555: CA265_RS01555 - KaiC 1, at 400,883 to 402,631 _RS01555 CA265_RS01560: CA265_RS01560 - circadian clock protein KaiB, at 402,632 to 402,922 _RS01560 CA265_RS01565: CA265_RS01565 - circadian clock protein KaiB, at 402,925 to 403,239 _RS01565 CA265_RS01570: CA265_RS01570 - hypothetical protein, at 403,243 to 405,012 _RS01570 CA265_RS01575: CA265_RS01575 - hypothetical protein, at 405,028 to 405,777 _RS01575 Position (kb) 403 404 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 402.316 kb on - strand, within CA265_RS01555at 402.316 kb on - strand, within CA265_RS01555at 402.318 kb on - strand, within CA265_RS01555at 402.318 kb on - strand, within CA265_RS01555at 402.437 kb on - strand, within CA265_RS01555at 402.508 kb on + strandat 402.520 kb on - strandat 402.520 kb on - strandat 402.590 kb on - strandat 402.662 kb on + strand, within CA265_RS01560at 402.662 kb on + strand, within CA265_RS01560at 402.743 kb on + strand, within CA265_RS01560at 402.745 kb on + strand, within CA265_RS01560at 402.898 kb on + strandat 402.899 kb on - strandat 402.900 kb on + strandat 402.905 kb on - strandat 402.921 kb on - strandat 402.921 kb on - strandat 402.954 kb on + strandat 403.032 kb on + strand, within CA265_RS01565at 403.033 kb on - strand, within CA265_RS01565at 403.073 kb on - strand, within CA265_RS01565at 403.110 kb on - strand, within CA265_RS01565at 403.116 kb on - strand, within CA265_RS01565at 403.263 kb on + strandat 403.263 kb on + strandat 403.264 kb on - strandat 403.282 kb on + strandat 403.282 kb on + strandat 403.365 kb on - strandat 403.365 kb on - strandat 403.413 kb on + strandat 403.413 kb on + strandat 403.484 kb on - strand, within CA265_RS01570at 403.517 kb on + strand, within CA265_RS01570at 403.583 kb on + strand, within CA265_RS01570at 403.584 kb on - strand, within CA265_RS01570at 403.596 kb on + strand, within CA265_RS01570at 403.597 kb on - strand, within CA265_RS01570at 403.597 kb on - strand, within CA265_RS01570at 403.599 kb on + strand, within CA265_RS01570at 403.618 kb on - strand, within CA265_RS01570at 403.618 kb on - strand, within CA265_RS01570at 403.618 kb on - strand, within CA265_RS01570at 403.763 kb on + strand, within CA265_RS01570at 403.943 kb on + strand, within CA265_RS01570at 403.959 kb on + strand, within CA265_RS01570at 404.154 kb on + strand, within CA265_RS01570at 404.179 kb on + strand, within CA265_RS01570at 404.203 kb on - strand, within CA265_RS01570at 404.231 kb on + strand, within CA265_RS01570at 404.232 kb on - strand, within CA265_RS01570at 404.278 kb on + strand, within CA265_RS01570at 404.279 kb on - strand, within CA265_RS01570at 404.297 kb on + strand, within CA265_RS01570at 404.298 kb on - strand, within CA265_RS01570at 404.298 kb on - strand, within CA265_RS01570at 404.593 kb on + strand, within CA265_RS01570at 404.593 kb on + strand, within CA265_RS01570at 404.593 kb on + strand, within CA265_RS01570at 404.594 kb on - strand, within CA265_RS01570at 404.594 kb on - strand, within CA265_RS01570at 404.595 kb on + strand, within CA265_RS01570at 404.596 kb on - strand, within CA265_RS01570at 404.616 kb on + strand, within CA265_RS01570at 404.736 kb on - strand, within CA265_RS01570at 404.771 kb on + strand, within CA265_RS01570at 404.896 kb on - strandat 404.976 kb on + strandat 404.977 kb on - strandat 404.977 kb on - strandat 405.043 kb on + strandat 405.142 kb on - strand, within CA265_RS01575at 405.143 kb on + strand, within CA265_RS01575at 405.199 kb on + strand, within CA265_RS01575at 405.200 kb on - strand, within CA265_RS01575at 405.235 kb on + strand, within CA265_RS01575at 405.236 kb on - strand, within CA265_RS01575at 405.239 kb on - strand, within CA265_RS01575at 405.269 kb on - strand, within CA265_RS01575at 405.301 kb on - strand, within CA265_RS01575at 405.359 kb on - strand, within CA265_RS01575at 405.360 kb on + strand, within CA265_RS01575at 405.360 kb on + strand, within CA265_RS01575at 405.360 kb on + strand, within CA265_RS01575at 405.361 kb on - strand, within CA265_RS01575at 405.362 kb on + strand, within CA265_RS01575at 405.363 kb on - strand, within CA265_RS01575at 405.366 kb on + strandat 405.366 kb on + strand, within CA265_RS01575at 405.408 kb on + strand, within CA265_RS01575at 405.409 kb on - strand, within CA265_RS01575at 405.422 kb on + strand, within CA265_RS01575at 405.475 kb on - strand, within CA265_RS01575at 405.588 kb on + strand, within CA265_RS01575at 405.604 kb on - strand, within CA265_RS01575at 405.639 kb on + strand, within CA265_RS01575at 405.650 kb on + strand, within CA265_RS01575at 405.651 kb on - strand, within CA265_RS01575at 405.651 kb on - strand, within CA265_RS01575at 405.748 kb on + strandat 405.816 kb on + strandat 405.909 kb on + strandat 405.959 kb on + strandat 406.012 kb on + strandat 406.012 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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402,316 - CA265_RS01555 0.82 +0.4
402,316 - CA265_RS01555 0.82 +0.4
402,318 - CA265_RS01555 0.82 -0.0
402,318 - CA265_RS01555 0.82 +0.6
402,437 - CA265_RS01555 0.89 -0.5
402,508 + -1.9
402,520 - +0.2
402,520 - -0.1
402,590 - -1.0
402,662 + CA265_RS01560 0.10 +1.4
402,662 + CA265_RS01560 0.10 +1.4
402,743 + CA265_RS01560 0.38 +0.1
402,745 + CA265_RS01560 0.39 -0.0
402,898 + -0.8
402,899 - +0.1
402,900 + +0.1
402,905 - +0.4
402,921 - -0.7
402,921 - -0.4
402,954 + -1.8
403,032 + CA265_RS01565 0.34 -2.7
403,033 - CA265_RS01565 0.34 +0.1
403,073 - CA265_RS01565 0.47 -0.3
403,110 - CA265_RS01565 0.59 -0.0
403,116 - CA265_RS01565 0.61 -0.6
403,263 + +0.3
403,263 + +0.4
403,264 - +0.2
403,282 + -0.2
403,282 + +0.0
403,365 - +0.8
403,365 - +1.2
403,413 + +1.7
403,413 + -2.0
403,484 - CA265_RS01570 0.14 -0.3
403,517 + CA265_RS01570 0.15 +1.2
403,583 + CA265_RS01570 0.19 -0.3
403,584 - CA265_RS01570 0.19 -1.0
403,596 + CA265_RS01570 0.20 -1.0
403,597 - CA265_RS01570 0.20 +0.8
403,597 - CA265_RS01570 0.20 +1.8
403,599 + CA265_RS01570 0.20 +0.4
403,618 - CA265_RS01570 0.21 -0.4
403,618 - CA265_RS01570 0.21 +0.2
403,618 - CA265_RS01570 0.21 +0.7
403,763 + CA265_RS01570 0.29 -0.3
403,943 + CA265_RS01570 0.40 -0.8
403,959 + CA265_RS01570 0.40 +1.1
404,154 + CA265_RS01570 0.51 +0.2
404,179 + CA265_RS01570 0.53 +0.2
404,203 - CA265_RS01570 0.54 -2.5
404,231 + CA265_RS01570 0.56 -0.2
404,232 - CA265_RS01570 0.56 +0.6
404,278 + CA265_RS01570 0.58 +0.6
404,279 - CA265_RS01570 0.59 +2.9
404,297 + CA265_RS01570 0.60 -0.6
404,298 - CA265_RS01570 0.60 -0.0
404,298 - CA265_RS01570 0.60 -1.8
404,593 + CA265_RS01570 0.76 +1.2
404,593 + CA265_RS01570 0.76 +0.0
404,593 + CA265_RS01570 0.76 +1.8
404,594 - CA265_RS01570 0.76 -0.4
404,594 - CA265_RS01570 0.76 -2.1
404,595 + CA265_RS01570 0.76 -0.3
404,596 - CA265_RS01570 0.76 +0.0
404,616 + CA265_RS01570 0.78 +1.4
404,736 - CA265_RS01570 0.84 +1.4
404,771 + CA265_RS01570 0.86 +3.4
404,896 - +1.8
404,976 + +0.8
404,977 - +0.9
404,977 - +0.4
405,043 + -3.0
405,142 - CA265_RS01575 0.15 +0.6
405,143 + CA265_RS01575 0.15 +0.1
405,199 + CA265_RS01575 0.23 -0.3
405,200 - CA265_RS01575 0.23 +0.6
405,235 + CA265_RS01575 0.28 -1.0
405,236 - CA265_RS01575 0.28 +0.8
405,239 - CA265_RS01575 0.28 -0.2
405,269 - CA265_RS01575 0.32 -0.2
405,301 - CA265_RS01575 0.36 -0.5
405,359 - CA265_RS01575 0.44 +0.7
405,360 + CA265_RS01575 0.44 -0.9
405,360 + CA265_RS01575 0.44 -0.0
405,360 + CA265_RS01575 0.44 -0.0
405,361 - CA265_RS01575 0.44 -0.2
405,362 + CA265_RS01575 0.45 +0.5
405,363 - CA265_RS01575 0.45 -1.9
405,366 + +0.8
405,366 + CA265_RS01575 0.45 +1.8
405,408 + CA265_RS01575 0.51 -1.6
405,409 - CA265_RS01575 0.51 -1.0
405,422 + CA265_RS01575 0.53 +0.6
405,475 - CA265_RS01575 0.60 -0.4
405,588 + CA265_RS01575 0.75 +0.0
405,604 - CA265_RS01575 0.77 +1.0
405,639 + CA265_RS01575 0.81 +0.2
405,650 + CA265_RS01575 0.83 -0.6
405,651 - CA265_RS01575 0.83 +0.0
405,651 - CA265_RS01575 0.83 +0.1
405,748 + +0.8
405,816 + +0.6
405,909 + -0.2
405,959 + +0.4
406,012 + -1.2
406,012 + +1.0

Or see this region's nucleotide sequence