Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00680

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00670 and CA265_RS00675 are separated by 18 nucleotidesCA265_RS00675 and CA265_RS00680 are separated by 25 nucleotidesCA265_RS00680 and CA265_RS00685 are separated by 371 nucleotidesCA265_RS00685 and CA265_RS00690 are separated by 65 nucleotides CA265_RS00670: CA265_RS00670 - metallophosphoesterase, at 152,886 to 153,728 _RS00670 CA265_RS00675: CA265_RS00675 - hypothetical protein, at 153,747 to 154,586 _RS00675 CA265_RS00680: CA265_RS00680 - hypothetical protein, at 154,612 to 157,053 _RS00680 CA265_RS00685: CA265_RS00685 - peptide-methionine (S)-S-oxide reductase, at 157,425 to 157,913 _RS00685 CA265_RS00690: CA265_RS00690 - hypothetical protein, at 157,979 to 158,374 _RS00690 Position (kb) 154 155 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 153.627 kb on + strand, within CA265_RS00670at 153.678 kb on + strandat 153.743 kb on + strandat 153.758 kb on - strandat 153.782 kb on + strandat 153.927 kb on + strand, within CA265_RS00675at 154.112 kb on - strand, within CA265_RS00675at 154.127 kb on - strand, within CA265_RS00675at 154.144 kb on + strand, within CA265_RS00675at 154.144 kb on + strand, within CA265_RS00675at 154.187 kb on + strand, within CA265_RS00675at 154.311 kb on - strand, within CA265_RS00675at 154.320 kb on + strand, within CA265_RS00675at 154.321 kb on - strand, within CA265_RS00675at 154.339 kb on + strand, within CA265_RS00675at 154.339 kb on + strand, within CA265_RS00675at 154.340 kb on - strand, within CA265_RS00675at 154.352 kb on - strand, within CA265_RS00675at 154.397 kb on - strand, within CA265_RS00675at 154.547 kb on + strandat 154.548 kb on - strandat 154.628 kb on + strandat 154.631 kb on + strandat 154.802 kb on - strandat 154.830 kb on + strandat 154.918 kb on - strand, within CA265_RS00680at 154.920 kb on + strand, within CA265_RS00680at 154.920 kb on + strand, within CA265_RS00680at 154.940 kb on - strand, within CA265_RS00680at 154.960 kb on - strand, within CA265_RS00680at 154.980 kb on + strand, within CA265_RS00680at 155.090 kb on + strand, within CA265_RS00680at 155.090 kb on + strand, within CA265_RS00680at 155.091 kb on - strand, within CA265_RS00680at 155.093 kb on - strand, within CA265_RS00680at 155.093 kb on - strand, within CA265_RS00680at 155.113 kb on - strand, within CA265_RS00680at 155.123 kb on - strand, within CA265_RS00680at 155.218 kb on + strand, within CA265_RS00680at 155.315 kb on + strand, within CA265_RS00680at 155.316 kb on - strand, within CA265_RS00680at 155.316 kb on - strand, within CA265_RS00680at 155.326 kb on - strand, within CA265_RS00680at 155.398 kb on - strand, within CA265_RS00680at 155.419 kb on - strand, within CA265_RS00680at 155.428 kb on + strand, within CA265_RS00680at 155.471 kb on + strand, within CA265_RS00680at 155.495 kb on - strand, within CA265_RS00680at 155.514 kb on + strand, within CA265_RS00680at 155.538 kb on - strand, within CA265_RS00680at 155.694 kb on + strand, within CA265_RS00680at 155.695 kb on - strand, within CA265_RS00680at 155.763 kb on + strand, within CA265_RS00680at 155.808 kb on - strand, within CA265_RS00680at 155.810 kb on - strand, within CA265_RS00680at 155.811 kb on + strand, within CA265_RS00680at 155.841 kb on + strand, within CA265_RS00680at 155.935 kb on - strand, within CA265_RS00680at 156.027 kb on + strand, within CA265_RS00680at 156.058 kb on + strand, within CA265_RS00680at 156.095 kb on + strand, within CA265_RS00680at 156.144 kb on - strand, within CA265_RS00680at 156.144 kb on - strand, within CA265_RS00680at 156.170 kb on - strand, within CA265_RS00680at 156.312 kb on + strand, within CA265_RS00680at 156.313 kb on - strand, within CA265_RS00680at 156.333 kb on + strand, within CA265_RS00680at 156.333 kb on + strand, within CA265_RS00680at 156.334 kb on - strand, within CA265_RS00680at 156.462 kb on + strand, within CA265_RS00680at 156.462 kb on + strand, within CA265_RS00680at 156.493 kb on - strand, within CA265_RS00680at 156.670 kb on + strand, within CA265_RS00680at 156.703 kb on + strand, within CA265_RS00680at 156.704 kb on - strand, within CA265_RS00680at 156.708 kb on + strand, within CA265_RS00680at 156.708 kb on + strand, within CA265_RS00680at 156.744 kb on - strand, within CA265_RS00680at 156.788 kb on + strand, within CA265_RS00680at 156.788 kb on + strand, within CA265_RS00680at 156.791 kb on - strand, within CA265_RS00680at 156.791 kb on - strand, within CA265_RS00680at 156.826 kb on + strandat 156.827 kb on - strandat 157.068 kb on + strandat 157.174 kb on + strandat 157.174 kb on + strandat 157.201 kb on + strandat 157.202 kb on - strandat 157.248 kb on - strandat 157.379 kb on + strandat 157.410 kb on + strandat 157.460 kb on + strandat 157.460 kb on + strandat 157.461 kb on - strandat 157.461 kb on - strandat 157.620 kb on - strand, within CA265_RS00685at 157.625 kb on - strand, within CA265_RS00685at 157.649 kb on + strand, within CA265_RS00685at 157.650 kb on - strand, within CA265_RS00685at 157.654 kb on - strand, within CA265_RS00685at 157.705 kb on + strand, within CA265_RS00685at 157.706 kb on - strand, within CA265_RS00685at 157.706 kb on - strand, within CA265_RS00685at 157.728 kb on + strand, within CA265_RS00685at 157.817 kb on - strand, within CA265_RS00685at 157.914 kb on - strandat 157.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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153,627 + CA265_RS00670 0.88 +0.2
153,678 + -0.2
153,743 + +1.3
153,758 - -2.0
153,782 + -0.2
153,927 + CA265_RS00675 0.21 -1.6
154,112 - CA265_RS00675 0.43 -0.0
154,127 - CA265_RS00675 0.45 -0.1
154,144 + CA265_RS00675 0.47 -1.5
154,144 + CA265_RS00675 0.47 +0.8
154,187 + CA265_RS00675 0.52 +0.8
154,311 - CA265_RS00675 0.67 -0.1
154,320 + CA265_RS00675 0.68 -0.1
154,321 - CA265_RS00675 0.68 +0.4
154,339 + CA265_RS00675 0.70 -0.8
154,339 + CA265_RS00675 0.70 +0.8
154,340 - CA265_RS00675 0.71 -1.2
154,352 - CA265_RS00675 0.72 -1.3
154,397 - CA265_RS00675 0.77 +0.9
154,547 + -0.2
154,548 - -2.2
154,628 + -0.6
154,631 + -0.7
154,802 - +0.4
154,830 + +0.3
154,918 - CA265_RS00680 0.13 -0.1
154,920 + CA265_RS00680 0.13 +0.8
154,920 + CA265_RS00680 0.13 -1.9
154,940 - CA265_RS00680 0.13 +0.4
154,960 - CA265_RS00680 0.14 +0.1
154,980 + CA265_RS00680 0.15 -0.3
155,090 + CA265_RS00680 0.20 +1.1
155,090 + CA265_RS00680 0.20 +1.6
155,091 - CA265_RS00680 0.20 -0.4
155,093 - CA265_RS00680 0.20 +0.3
155,093 - CA265_RS00680 0.20 -0.0
155,113 - CA265_RS00680 0.21 -1.4
155,123 - CA265_RS00680 0.21 +1.8
155,218 + CA265_RS00680 0.25 +0.3
155,315 + CA265_RS00680 0.29 -0.9
155,316 - CA265_RS00680 0.29 +0.1
155,316 - CA265_RS00680 0.29 -2.5
155,326 - CA265_RS00680 0.29 +0.7
155,398 - CA265_RS00680 0.32 +0.5
155,419 - CA265_RS00680 0.33 +0.9
155,428 + CA265_RS00680 0.33 -0.3
155,471 + CA265_RS00680 0.35 -0.4
155,495 - CA265_RS00680 0.36 +0.7
155,514 + CA265_RS00680 0.37 -0.5
155,538 - CA265_RS00680 0.38 +0.6
155,694 + CA265_RS00680 0.44 +1.8
155,695 - CA265_RS00680 0.44 -0.3
155,763 + CA265_RS00680 0.47 -0.6
155,808 - CA265_RS00680 0.49 -0.1
155,810 - CA265_RS00680 0.49 -2.9
155,811 + CA265_RS00680 0.49 -1.7
155,841 + CA265_RS00680 0.50 +0.2
155,935 - CA265_RS00680 0.54 +0.8
156,027 + CA265_RS00680 0.58 +1.0
156,058 + CA265_RS00680 0.59 +1.0
156,095 + CA265_RS00680 0.61 -1.2
156,144 - CA265_RS00680 0.63 -0.4
156,144 - CA265_RS00680 0.63 +0.2
156,170 - CA265_RS00680 0.64 +1.4
156,312 + CA265_RS00680 0.70 +0.8
156,313 - CA265_RS00680 0.70 -0.0
156,333 + CA265_RS00680 0.70 +1.3
156,333 + CA265_RS00680 0.70 -1.4
156,334 - CA265_RS00680 0.71 -0.4
156,462 + CA265_RS00680 0.76 +0.2
156,462 + CA265_RS00680 0.76 +0.5
156,493 - CA265_RS00680 0.77 -0.4
156,670 + CA265_RS00680 0.84 -0.7
156,703 + CA265_RS00680 0.86 -0.2
156,704 - CA265_RS00680 0.86 -0.0
156,708 + CA265_RS00680 0.86 -2.6
156,708 + CA265_RS00680 0.86 -1.2
156,744 - CA265_RS00680 0.87 +0.7
156,788 + CA265_RS00680 0.89 -1.4
156,788 + CA265_RS00680 0.89 +1.5
156,791 - CA265_RS00680 0.89 +0.6
156,791 - CA265_RS00680 0.89 +0.8
156,826 + -0.4
156,827 - +0.2
157,068 + +0.4
157,174 + -1.7
157,174 + -0.0
157,201 + +1.3
157,202 - -0.8
157,248 - +0.3
157,379 + -1.8
157,410 + -0.2
157,460 + +1.8
157,460 + -0.5
157,461 - -0.1
157,461 - +0.7
157,620 - CA265_RS00685 0.40 -1.1
157,625 - CA265_RS00685 0.41 -1.0
157,649 + CA265_RS00685 0.46 +0.5
157,650 - CA265_RS00685 0.46 +1.4
157,654 - CA265_RS00685 0.47 -1.7
157,705 + CA265_RS00685 0.57 +1.0
157,706 - CA265_RS00685 0.57 -0.4
157,706 - CA265_RS00685 0.57 -1.0
157,728 + CA265_RS00685 0.62 -0.0
157,817 - CA265_RS00685 0.80 -0.2
157,914 - -0.2
157,915 + +0.2

Or see this region's nucleotide sequence