Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30015

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_30005 and AO356_30010 are separated by 0 nucleotidesAO356_30010 and AO356_30015 overlap by 32 nucleotidesAO356_30015 and AO356_30020 are separated by 289 nucleotidesAO356_30020 and AO356_30025 overlap by 4 nucleotides AO356_30005: AO356_30005 - diguanylate cyclase, at 7,002,751 to 7,003,509 _30005 AO356_30010: AO356_30010 - transcriptional regulator, at 7,003,510 to 7,004,181 _30010 AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229 _30015 AO356_30020: AO356_30020 - hypothetical protein, at 7,005,519 to 7,006,031 _30020 AO356_30025: AO356_30025 - ferredoxin, at 7,006,028 to 7,006,957 _30025 Position (kb) 7004 7005 7006Strain fitness (log2 ratio) -1 0 1at 7003.188 kb on - strand, within AO356_30005at 7003.343 kb on + strand, within AO356_30005at 7003.343 kb on + strand, within AO356_30005at 7003.344 kb on - strand, within AO356_30005at 7003.511 kb on + strandat 7003.511 kb on + strandat 7003.512 kb on - strandat 7003.512 kb on - strandat 7003.659 kb on + strand, within AO356_30010at 7003.660 kb on - strand, within AO356_30010at 7003.742 kb on + strand, within AO356_30010at 7003.875 kb on - strand, within AO356_30010at 7003.875 kb on - strand, within AO356_30010at 7004.161 kb on + strandat 7004.162 kb on - strandat 7004.228 kb on + strandat 7004.229 kb on - strandat 7004.678 kb on + strand, within AO356_30015at 7004.678 kb on + strand, within AO356_30015at 7004.738 kb on + strand, within AO356_30015at 7004.738 kb on + strand, within AO356_30015at 7004.804 kb on - strand, within AO356_30015at 7005.332 kb on + strandat 7005.378 kb on + strandat 7005.379 kb on - strandat 7005.379 kb on - strandat 7005.392 kb on + strandat 7005.435 kb on - strandat 7005.751 kb on - strand, within AO356_30020at 7005.865 kb on - strand, within AO356_30020at 7005.865 kb on - strand, within AO356_30020at 7005.865 kb on - strand, within AO356_30020at 7005.865 kb on - strand, within AO356_30020at 7006.191 kb on - strand, within AO356_30025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
7,003,188 - AO356_30005 0.58 -0.3
7,003,343 + AO356_30005 0.78 -1.0
7,003,343 + AO356_30005 0.78 +1.0
7,003,344 - AO356_30005 0.78 +0.1
7,003,511 + +0.3
7,003,511 + -0.5
7,003,512 - -1.0
7,003,512 - -1.2
7,003,659 + AO356_30010 0.22 -0.3
7,003,660 - AO356_30010 0.22 -0.1
7,003,742 + AO356_30010 0.35 +0.0
7,003,875 - AO356_30010 0.54 -0.2
7,003,875 - AO356_30010 0.54 -1.3
7,004,161 + +0.3
7,004,162 - -0.0
7,004,228 + -0.1
7,004,229 - +1.7
7,004,678 + AO356_30015 0.49 -0.7
7,004,678 + AO356_30015 0.49 -0.3
7,004,738 + AO356_30015 0.54 +0.1
7,004,738 + AO356_30015 0.54 -0.2
7,004,804 - AO356_30015 0.61 -1.0
7,005,332 + +0.8
7,005,378 + +0.0
7,005,379 - -0.3
7,005,379 - -0.4
7,005,392 + -0.8
7,005,435 - +0.7
7,005,751 - AO356_30020 0.45 +0.9
7,005,865 - AO356_30020 0.67 +0.1
7,005,865 - AO356_30020 0.67 -0.3
7,005,865 - AO356_30020 0.67 +0.7
7,005,865 - AO356_30020 0.67 +0.0
7,006,191 - AO356_30025 0.18 -0.7

Or see this region's nucleotide sequence