Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03290 and AO356_03295 are separated by 117 nucleotides AO356_03295 and AO356_03300 are separated by 64 nucleotides AO356_03300 and AO356_03305 are separated by 191 nucleotides AO356_03305 and AO356_03310 are separated by 204 nucleotides
AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543
_03290
AO356_03295: AO356_03295 - transcriptional regulator, at 729,661 to 730,359
_03295
AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075
_03300
AO356_03305: AO356_03305 - ATPase, at 733,267 to 733,812
_03305
AO356_03310: AO356_03310 - potassium-transporting ATPase subunit B, at 734,017 to 736,071
_03310
Position (kb) 730
731
732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 729.463 kb on + strand at 729.464 kb on - strand at 729.464 kb on - strand at 729.524 kb on - strand at 729.541 kb on + strand at 729.541 kb on + strand at 729.542 kb on - strand at 729.542 kb on - strand at 729.542 kb on - strand at 729.542 kb on - strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.656 kb on + strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.657 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.663 kb on - strand at 729.779 kb on + strand, within AO356_03295 at 729.779 kb on + strand, within AO356_03295 at 729.780 kb on - strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.881 kb on + strand, within AO356_03295 at 729.882 kb on - strand, within AO356_03295 at 730.059 kb on - strand, within AO356_03295 at 730.274 kb on + strand, within AO356_03295 at 730.274 kb on + strand, within AO356_03295 at 730.275 kb on - strand, within AO356_03295 at 730.410 kb on + strand at 730.410 kb on + strand at 730.410 kb on + strand at 730.410 kb on + strand at 730.411 kb on - strand at 730.411 kb on - strand at 730.605 kb on + strand at 730.605 kb on + strand at 730.605 kb on + strand at 730.605 kb on + strand at 730.605 kb on + strand at 730.605 kb on + strand at 730.606 kb on - strand at 730.606 kb on - strand at 730.612 kb on + strand at 730.613 kb on - strand at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.791 kb on + strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.792 kb on - strand, within AO356_03300 at 730.959 kb on + strand, within AO356_03300 at 730.959 kb on + strand, within AO356_03300 at 730.959 kb on + strand, within AO356_03300 at 730.960 kb on - strand, within AO356_03300 at 731.471 kb on + strand, within AO356_03300 at 731.471 kb on + strand, within AO356_03300 at 731.471 kb on + strand, within AO356_03300 at 731.472 kb on - strand, within AO356_03300 at 731.472 kb on - strand, within AO356_03300 at 731.472 kb on - strand, within AO356_03300 at 731.472 kb on - strand, within AO356_03300 at 731.830 kb on + strand, within AO356_03300 at 731.830 kb on + strand, within AO356_03300 at 731.831 kb on - strand, within AO356_03300 at 731.831 kb on - strand, within AO356_03300 at 731.831 kb on - strand, within AO356_03300 at 731.907 kb on + strand, within AO356_03300 at 731.907 kb on + strand, within AO356_03300 at 731.907 kb on + strand, within AO356_03300 at 731.907 kb on + strand, within AO356_03300 at 731.907 kb on + strand, within AO356_03300 at 731.908 kb on - strand, within AO356_03300 at 732.495 kb on + strand, within AO356_03300 at 732.495 kb on + strand, within AO356_03300 at 732.495 kb on + strand, within AO356_03300 at 732.495 kb on + strand, within AO356_03300 at 732.495 kb on + strand, within AO356_03300 at 732.496 kb on - strand, within AO356_03300 at 732.496 kb on - strand, within AO356_03300 at 732.623 kb on + strand, within AO356_03300 at 732.669 kb on + strand, within AO356_03300 at 732.670 kb on - strand, within AO356_03300 at 732.969 kb on + strand at 732.969 kb on + strand at 732.969 kb on + strand at 732.970 kb on - strand at 732.970 kb on - strand at 732.970 kb on - strand at 733.097 kb on + strand at 733.098 kb on - strand at 733.098 kb on - strand at 733.143 kb on + strand at 733.144 kb on - strand at 733.144 kb on - strand at 733.269 kb on - strand at 733.561 kb on - strand, within AO356_03305 at 733.745 kb on + strand, within AO356_03305 at 733.777 kb on + strand at 733.778 kb on - strand at 733.778 kb on - strand at 734.046 kb on + strand at 734.046 kb on + strand at 734.047 kb on - strand at 734.047 kb on - strand at 734.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 729,463 + +0.4 729,464 - -0.6 729,464 - -0.0 729,524 - +0.3 729,541 + +0.8 729,541 + +0.1 729,542 - +0.1 729,542 - +0.8 729,542 - +0.0 729,542 - -0.9 729,656 + -1.0 729,656 + +0.8 729,656 + +0.1 729,656 + +0.9 729,656 + -0.3 729,656 + -0.1 729,657 - -0.2 729,657 - -0.6 729,657 - -0.4 729,657 - +0.4 729,657 - -1.3 729,657 - +0.5 729,663 - -1.2 729,663 - -1.6 729,663 - +0.9 729,663 - +0.1 729,663 - -0.3 729,663 - -0.1 729,779 + AO356_03295 0.17 -0.1 729,779 + AO356_03295 0.17 +0.6 729,780 - AO356_03295 0.17 +0.5 729,881 + AO356_03295 0.31 +0.0 729,881 + AO356_03295 0.31 +0.1 729,881 + AO356_03295 0.31 +1.4 729,881 + AO356_03295 0.31 +0.3 729,882 - AO356_03295 0.32 -0.0 730,059 - AO356_03295 0.57 +0.7 730,274 + AO356_03295 0.88 -0.4 730,274 + AO356_03295 0.88 +0.4 730,275 - AO356_03295 0.88 +0.4 730,410 + -0.4 730,410 + +0.2 730,410 + -0.2 730,410 + +1.4 730,411 - -0.7 730,411 - +0.4 730,605 + -0.2 730,605 + +0.4 730,605 + -0.1 730,605 + -0.2 730,605 + +0.1 730,605 + -0.2 730,606 - -0.4 730,606 - +0.3 730,612 + +0.6 730,613 - -1.4 730,791 + AO356_03300 0.14 -0.0 730,791 + AO356_03300 0.14 +0.8 730,791 + AO356_03300 0.14 +0.0 730,791 + AO356_03300 0.14 +0.0 730,791 + AO356_03300 0.14 -0.0 730,791 + AO356_03300 0.14 +1.0 730,791 + AO356_03300 0.14 -0.2 730,791 + AO356_03300 0.14 -0.4 730,792 - AO356_03300 0.14 -0.4 730,792 - AO356_03300 0.14 -0.1 730,792 - AO356_03300 0.14 +0.2 730,792 - AO356_03300 0.14 -0.1 730,792 - AO356_03300 0.14 -0.2 730,792 - AO356_03300 0.14 +0.4 730,792 - AO356_03300 0.14 -1.0 730,792 - AO356_03300 0.14 +0.7 730,792 - AO356_03300 0.14 -0.3 730,792 - AO356_03300 0.14 -1.0 730,792 - AO356_03300 0.14 -0.2 730,792 - AO356_03300 0.14 +1.2 730,792 - AO356_03300 0.14 -0.8 730,792 - AO356_03300 0.14 -0.4 730,792 - AO356_03300 0.14 +0.1 730,959 + AO356_03300 0.20 -0.2 730,959 + AO356_03300 0.20 -1.2 730,959 + AO356_03300 0.20 +1.1 730,960 - AO356_03300 0.20 -0.5 731,471 + AO356_03300 0.39 +1.6 731,471 + AO356_03300 0.39 -1.3 731,471 + AO356_03300 0.39 +0.5 731,472 - AO356_03300 0.40 +0.7 731,472 - AO356_03300 0.40 -0.4 731,472 - AO356_03300 0.40 -0.2 731,472 - AO356_03300 0.40 -0.3 731,830 + AO356_03300 0.53 +0.2 731,830 + AO356_03300 0.53 -0.4 731,831 - AO356_03300 0.53 +0.1 731,831 - AO356_03300 0.53 -1.0 731,831 - AO356_03300 0.53 +1.4 731,907 + AO356_03300 0.56 -3.0 731,907 + AO356_03300 0.56 -0.2 731,907 + AO356_03300 0.56 -0.6 731,907 + AO356_03300 0.56 -1.1 731,907 + AO356_03300 0.56 +0.1 731,908 - AO356_03300 0.56 +0.2 732,495 + AO356_03300 0.78 -0.4 732,495 + AO356_03300 0.78 -1.0 732,495 + AO356_03300 0.78 +0.3 732,495 + AO356_03300 0.78 +0.4 732,495 + AO356_03300 0.78 +0.7 732,496 - AO356_03300 0.78 -1.9 732,496 - AO356_03300 0.78 +0.4 732,623 + AO356_03300 0.83 -0.9 732,669 + AO356_03300 0.85 -0.9 732,670 - AO356_03300 0.85 -0.1 732,969 + -0.4 732,969 + +0.2 732,969 + +0.2 732,970 - -0.6 732,970 - +0.0 732,970 - +0.2 733,097 + +0.1 733,098 - +0.8 733,098 - -0.1 733,143 + -1.0 733,144 - -0.4 733,144 - -0.7 733,269 - +0.1 733,561 - AO356_03305 0.54 -0.8 733,745 + AO356_03305 0.88 -0.7 733,777 + -0.1 733,778 - +0.6 733,778 - +0.2 734,046 + -0.1 734,046 + -1.0 734,047 - +0.1 734,047 - -0.7 734,047 - -0.9
Or see this region's nucleotide sequence