Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00190

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00180 and AO356_00185 are separated by 89 nucleotidesAO356_00185 and AO356_00190 are separated by 74 nucleotidesAO356_00190 and AO356_00195 overlap by 4 nucleotides AO356_00180: AO356_00180 - conjugal transfer protein TraG, at 31,945 to 34,050 _00180 AO356_00185: AO356_00185 - hypothetical protein, at 34,140 to 34,871 _00185 AO356_00190: AO356_00190 - hypothetical protein, at 34,946 to 36,082 _00190 AO356_00195: AO356_00195 - hypothetical protein, at 36,079 to 37,830 _00195 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 33.948 kb on + strandat 33.948 kb on + strandat 33.971 kb on - strandat 34.048 kb on + strandat 34.048 kb on + strandat 34.049 kb on - strandat 34.051 kb on + strandat 34.052 kb on - strandat 34.052 kb on - strandat 34.080 kb on + strandat 34.080 kb on + strandat 34.081 kb on - strandat 34.081 kb on - strandat 34.081 kb on - strandat 34.560 kb on + strand, within AO356_00185at 34.560 kb on + strand, within AO356_00185at 34.561 kb on - strand, within AO356_00185at 34.561 kb on - strand, within AO356_00185at 34.565 kb on + strand, within AO356_00185at 34.591 kb on + strand, within AO356_00185at 34.591 kb on + strand, within AO356_00185at 34.628 kb on + strand, within AO356_00185at 34.629 kb on - strand, within AO356_00185at 34.658 kb on - strand, within AO356_00185at 34.707 kb on + strand, within AO356_00185at 34.730 kb on - strand, within AO356_00185at 34.758 kb on - strand, within AO356_00185at 34.762 kb on - strand, within AO356_00185at 34.762 kb on - strand, within AO356_00185at 34.765 kb on + strand, within AO356_00185at 34.863 kb on + strandat 34.870 kb on - strandat 34.943 kb on + strandat 34.944 kb on - strandat 34.944 kb on - strandat 34.947 kb on + strandat 34.947 kb on + strandat 34.948 kb on - strandat 35.196 kb on + strand, within AO356_00190at 35.196 kb on + strand, within AO356_00190at 35.196 kb on + strand, within AO356_00190at 35.196 kb on + strand, within AO356_00190at 35.316 kb on + strand, within AO356_00190at 35.335 kb on - strand, within AO356_00190at 35.335 kb on - strand, within AO356_00190at 35.443 kb on + strand, within AO356_00190at 35.454 kb on + strand, within AO356_00190at 35.454 kb on + strand, within AO356_00190at 35.487 kb on - strand, within AO356_00190at 35.588 kb on + strand, within AO356_00190at 35.656 kb on + strand, within AO356_00190at 35.657 kb on - strand, within AO356_00190at 35.657 kb on - strand, within AO356_00190at 35.657 kb on - strand, within AO356_00190at 35.663 kb on - strand, within AO356_00190at 35.663 kb on - strand, within AO356_00190at 35.708 kb on + strand, within AO356_00190at 35.709 kb on - strand, within AO356_00190at 35.709 kb on - strand, within AO356_00190at 35.709 kb on - strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.797 kb on - strand, within AO356_00190at 35.801 kb on + strand, within AO356_00190at 35.802 kb on - strand, within AO356_00190at 35.802 kb on - strand, within AO356_00190at 35.803 kb on + strand, within AO356_00190at 35.803 kb on + strand, within AO356_00190at 35.848 kb on + strand, within AO356_00190at 35.848 kb on + strand, within AO356_00190at 35.849 kb on - strand, within AO356_00190at 35.946 kb on + strand, within AO356_00190at 35.947 kb on - strand, within AO356_00190at 35.987 kb on + strandat 35.987 kb on + strandat 35.988 kb on - strandat 35.988 kb on - strandat 35.988 kb on - strandat 35.988 kb on - strandat 36.018 kb on + strandat 36.018 kb on + strandat 36.055 kb on - strandat 36.111 kb on + strandat 36.112 kb on - strandat 36.112 kb on - strandat 36.186 kb on + strandat 36.187 kb on - strandat 36.187 kb on - strandat 36.263 kb on + strand, within AO356_00195at 36.264 kb on - strand, within AO356_00195at 36.264 kb on - strand, within AO356_00195at 36.264 kb on - strand, within AO356_00195at 36.264 kb on - strand, within AO356_00195at 36.382 kb on + strand, within AO356_00195at 36.382 kb on + strand, within AO356_00195at 36.383 kb on - strand, within AO356_00195at 36.400 kb on + strand, within AO356_00195at 36.401 kb on - strand, within AO356_00195at 36.441 kb on + strand, within AO356_00195at 36.442 kb on - strand, within AO356_00195at 36.442 kb on - strand, within AO356_00195at 36.442 kb on - strand, within AO356_00195at 36.793 kb on + strand, within AO356_00195at 36.793 kb on + strand, within AO356_00195at 36.794 kb on - strand, within AO356_00195at 36.794 kb on - strand, within AO356_00195at 36.819 kb on - strand, within AO356_00195at 36.829 kb on + strand, within AO356_00195at 36.830 kb on - strand, within AO356_00195at 36.830 kb on - strand, within AO356_00195at 36.893 kb on + strand, within AO356_00195at 36.893 kb on + strand, within AO356_00195at 36.893 kb on + strand, within AO356_00195at 36.894 kb on - strand, within AO356_00195at 36.894 kb on - strand, within AO356_00195at 36.909 kb on - strand, within AO356_00195at 36.945 kb on - strand, within AO356_00195at 36.945 kb on - strand, within AO356_00195at 36.962 kb on + strand, within AO356_00195at 36.989 kb on + strand, within AO356_00195at 36.999 kb on + strand, within AO356_00195at 37.000 kb on - strand, within AO356_00195at 37.027 kb on - strand, within AO356_00195at 37.036 kb on - strand, within AO356_00195

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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33,948 + -0.2
33,948 + +0.5
33,971 - +0.7
34,048 + +1.6
34,048 + +0.3
34,049 - -0.6
34,051 + +1.1
34,052 - -0.5
34,052 - -0.1
34,080 + +0.7
34,080 + +0.2
34,081 - +0.1
34,081 - +2.1
34,081 - -0.3
34,560 + AO356_00185 0.57 -0.2
34,560 + AO356_00185 0.57 -0.7
34,561 - AO356_00185 0.58 +0.3
34,561 - AO356_00185 0.58 -0.5
34,565 + AO356_00185 0.58 +0.4
34,591 + AO356_00185 0.62 -0.2
34,591 + AO356_00185 0.62 +0.3
34,628 + AO356_00185 0.67 -0.1
34,629 - AO356_00185 0.67 +0.5
34,658 - AO356_00185 0.71 -0.8
34,707 + AO356_00185 0.77 -0.2
34,730 - AO356_00185 0.81 +0.4
34,758 - AO356_00185 0.84 -0.0
34,762 - AO356_00185 0.85 -0.9
34,762 - AO356_00185 0.85 -1.6
34,765 + AO356_00185 0.85 +0.0
34,863 + +0.2
34,870 - -2.0
34,943 + +0.2
34,944 - -0.1
34,944 - -0.1
34,947 + +1.1
34,947 + +0.8
34,948 - +0.1
35,196 + AO356_00190 0.22 -1.1
35,196 + AO356_00190 0.22 -0.4
35,196 + AO356_00190 0.22 -0.6
35,196 + AO356_00190 0.22 +0.7
35,316 + AO356_00190 0.33 +0.1
35,335 - AO356_00190 0.34 -0.1
35,335 - AO356_00190 0.34 +0.1
35,443 + AO356_00190 0.44 -1.3
35,454 + AO356_00190 0.45 +0.8
35,454 + AO356_00190 0.45 -0.0
35,487 - AO356_00190 0.48 +0.5
35,588 + AO356_00190 0.56 -0.0
35,656 + AO356_00190 0.62 -1.0
35,657 - AO356_00190 0.63 +0.4
35,657 - AO356_00190 0.63 -0.4
35,657 - AO356_00190 0.63 +0.1
35,663 - AO356_00190 0.63 +0.8
35,663 - AO356_00190 0.63 +0.8
35,708 + AO356_00190 0.67 +0.6
35,709 - AO356_00190 0.67 -1.3
35,709 - AO356_00190 0.67 +1.0
35,709 - AO356_00190 0.67 -0.9
35,796 + AO356_00190 0.75 -0.1
35,796 + AO356_00190 0.75 +0.4
35,796 + AO356_00190 0.75 -0.0
35,796 + AO356_00190 0.75 +0.0
35,796 + AO356_00190 0.75 +1.5
35,796 + AO356_00190 0.75 +1.0
35,797 - AO356_00190 0.75 +0.2
35,801 + AO356_00190 0.75 +0.3
35,802 - AO356_00190 0.75 +0.5
35,802 - AO356_00190 0.75 +0.8
35,803 + AO356_00190 0.75 -0.8
35,803 + AO356_00190 0.75 +0.2
35,848 + AO356_00190 0.79 +1.1
35,848 + AO356_00190 0.79 +0.4
35,849 - AO356_00190 0.79 +1.2
35,946 + AO356_00190 0.88 -0.3
35,947 - AO356_00190 0.88 -0.4
35,987 + +0.2
35,987 + +0.4
35,988 - -0.4
35,988 - +0.1
35,988 - -0.4
35,988 - -1.2
36,018 + +0.1
36,018 + -0.1
36,055 - -0.3
36,111 + +0.5
36,112 - +0.7
36,112 - +0.2
36,186 + +0.7
36,187 - -0.7
36,187 - +0.6
36,263 + AO356_00195 0.11 -0.8
36,264 - AO356_00195 0.11 +0.0
36,264 - AO356_00195 0.11 +0.2
36,264 - AO356_00195 0.11 +1.0
36,264 - AO356_00195 0.11 -0.2
36,382 + AO356_00195 0.17 +0.7
36,382 + AO356_00195 0.17 -0.9
36,383 - AO356_00195 0.17 +0.3
36,400 + AO356_00195 0.18 +0.3
36,401 - AO356_00195 0.18 -0.3
36,441 + AO356_00195 0.21 +1.7
36,442 - AO356_00195 0.21 +0.8
36,442 - AO356_00195 0.21 +0.1
36,442 - AO356_00195 0.21 -0.7
36,793 + AO356_00195 0.41 -1.2
36,793 + AO356_00195 0.41 +0.6
36,794 - AO356_00195 0.41 -0.8
36,794 - AO356_00195 0.41 -0.4
36,819 - AO356_00195 0.42 +0.1
36,829 + AO356_00195 0.43 +0.2
36,830 - AO356_00195 0.43 -0.5
36,830 - AO356_00195 0.43 -0.0
36,893 + AO356_00195 0.46 -0.2
36,893 + AO356_00195 0.46 -0.1
36,893 + AO356_00195 0.46 -0.7
36,894 - AO356_00195 0.47 -0.3
36,894 - AO356_00195 0.47 +0.0
36,909 - AO356_00195 0.47 +0.9
36,945 - AO356_00195 0.49 -1.6
36,945 - AO356_00195 0.49 -1.5
36,962 + AO356_00195 0.50 +1.0
36,989 + AO356_00195 0.52 +0.0
36,999 + AO356_00195 0.53 +1.0
37,000 - AO356_00195 0.53 +0.6
37,027 - AO356_00195 0.54 +1.8
37,036 - AO356_00195 0.55 -1.3

Or see this region's nucleotide sequence