Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03915

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03905 and ABIE51_RS03910 are separated by 123 nucleotidesABIE51_RS03910 and ABIE51_RS03915 are separated by 65 nucleotidesABIE51_RS03915 and ABIE51_RS03920 are separated by 79 nucleotidesABIE51_RS03920 and ABIE51_RS03925 are separated by 38 nucleotides ABIE51_RS03905: ABIE51_RS03905 - HAD family hydrolase, at 855,941 to 856,660 _RS03905 ABIE51_RS03910: ABIE51_RS03910 - hypothetical protein, at 856,784 to 857,284 _RS03910 ABIE51_RS03915: ABIE51_RS03915 - hypothetical protein, at 857,350 to 858,066 _RS03915 ABIE51_RS03920: ABIE51_RS03920 - GNAT family N-acetyltransferase, at 858,146 to 858,631 _RS03920 ABIE51_RS03925: ABIE51_RS03925 - tRNA dihydrouridine(20/20a) synthase DusA, at 858,670 to 859,680 _RS03925 Position (kb) 857 858 859Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 856.415 kb on + strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.416 kb on - strand, within ABIE51_RS03905at 856.535 kb on + strand, within ABIE51_RS03905at 856.730 kb on + strandat 856.919 kb on + strand, within ABIE51_RS03910at 856.919 kb on + strand, within ABIE51_RS03910at 856.919 kb on + strand, within ABIE51_RS03910at 856.920 kb on - strand, within ABIE51_RS03910at 856.937 kb on + strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.940 kb on + strand, within ABIE51_RS03910at 856.940 kb on + strand, within ABIE51_RS03910at 856.940 kb on + strand, within ABIE51_RS03910at 856.941 kb on - strand, within ABIE51_RS03910at 856.941 kb on - strand, within ABIE51_RS03910at 856.941 kb on - strand, within ABIE51_RS03910at 856.988 kb on + strand, within ABIE51_RS03910at 856.988 kb on + strand, within ABIE51_RS03910at 856.988 kb on + strand, within ABIE51_RS03910at 856.989 kb on - strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.009 kb on + strand, within ABIE51_RS03910at 857.010 kb on - strand, within ABIE51_RS03910at 857.021 kb on + strand, within ABIE51_RS03910at 857.115 kb on - strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.129 kb on + strand, within ABIE51_RS03910at 857.130 kb on - strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.169 kb on - strand, within ABIE51_RS03910at 857.169 kb on - strand, within ABIE51_RS03910at 857.180 kb on + strand, within ABIE51_RS03910at 857.180 kb on + strand, within ABIE51_RS03910at 857.189 kb on + strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.195 kb on + strand, within ABIE51_RS03910at 857.196 kb on - strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.225 kb on + strand, within ABIE51_RS03910at 857.226 kb on - strand, within ABIE51_RS03910at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.441 kb on - strand, within ABIE51_RS03915at 857.441 kb on - strand, within ABIE51_RS03915at 857.441 kb on - strand, within ABIE51_RS03915at 857.555 kb on - strand, within ABIE51_RS03915at 857.555 kb on - strand, within ABIE51_RS03915at 857.557 kb on + strand, within ABIE51_RS03915at 857.623 kb on + strand, within ABIE51_RS03915at 857.623 kb on + strand, within ABIE51_RS03915at 857.623 kb on + strand, within ABIE51_RS03915at 857.624 kb on - strand, within ABIE51_RS03915at 857.668 kb on + strand, within ABIE51_RS03915at 857.668 kb on + strand, within ABIE51_RS03915at 857.668 kb on + strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.669 kb on - strand, within ABIE51_RS03915at 857.788 kb on + strand, within ABIE51_RS03915at 857.788 kb on + strand, within ABIE51_RS03915at 857.789 kb on - strand, within ABIE51_RS03915at 857.789 kb on - strand, within ABIE51_RS03915at 858.121 kb on + strandat 858.122 kb on - strandat 858.134 kb on + strandat 858.134 kb on + strandat 858.135 kb on - strandat 858.135 kb on - strandat 858.135 kb on - strandat 858.211 kb on + strand, within ABIE51_RS03920at 858.359 kb on + strand, within ABIE51_RS03920at 858.359 kb on + strand, within ABIE51_RS03920at 858.359 kb on + strand, within ABIE51_RS03920at 858.360 kb on - strand, within ABIE51_RS03920at 858.378 kb on - strand, within ABIE51_RS03920at 858.378 kb on - strand, within ABIE51_RS03920at 858.478 kb on + strand, within ABIE51_RS03920at 858.479 kb on - strand, within ABIE51_RS03920at 858.530 kb on + strand, within ABIE51_RS03920at 858.531 kb on - strand, within ABIE51_RS03920at 858.531 kb on - strand, within ABIE51_RS03920at 858.531 kb on - strand, within ABIE51_RS03920at 858.581 kb on + strand, within ABIE51_RS03920at 858.581 kb on + strand, within ABIE51_RS03920at 858.582 kb on - strand, within ABIE51_RS03920at 858.599 kb on + strandat 858.599 kb on + strandat 858.599 kb on + strandat 858.599 kb on + strandat 858.600 kb on - strandat 858.600 kb on - strandat 858.600 kb on - strandat 858.600 kb on - strandat 858.600 kb on - strandat 858.600 kb on - strandat 858.600 kb on - strandat 858.630 kb on - strandat 858.790 kb on + strand, within ABIE51_RS03925at 858.790 kb on + strand, within ABIE51_RS03925at 858.791 kb on - strand, within ABIE51_RS03925at 858.791 kb on - strand, within ABIE51_RS03925at 858.791 kb on - strand, within ABIE51_RS03925at 858.791 kb on - strand, within ABIE51_RS03925at 858.791 kb on - strand, within ABIE51_RS03925at 858.791 kb on - strand, within ABIE51_RS03925at 858.792 kb on + strand, within ABIE51_RS03925at 858.792 kb on + strand, within ABIE51_RS03925at 858.793 kb on - strand, within ABIE51_RS03925at 858.905 kb on + strand, within ABIE51_RS03925at 858.905 kb on + strand, within ABIE51_RS03925at 858.905 kb on + strand, within ABIE51_RS03925at 858.906 kb on - strand, within ABIE51_RS03925at 858.906 kb on - strand, within ABIE51_RS03925

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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856,415 + ABIE51_RS03905 0.66 +0.4
856,415 + ABIE51_RS03905 0.66 -1.0
856,415 + ABIE51_RS03905 0.66 +2.4
856,415 + ABIE51_RS03905 0.66 -0.5
856,416 - ABIE51_RS03905 0.66 -0.4
856,535 + ABIE51_RS03905 0.82 +1.5
856,730 + +0.3
856,919 + ABIE51_RS03910 0.27 -0.7
856,919 + ABIE51_RS03910 0.27 +0.7
856,919 + ABIE51_RS03910 0.27 -0.3
856,920 - ABIE51_RS03910 0.27 -0.1
856,937 + ABIE51_RS03910 0.31 -0.9
856,938 - ABIE51_RS03910 0.31 +1.6
856,938 - ABIE51_RS03910 0.31 +0.2
856,938 - ABIE51_RS03910 0.31 -0.5
856,938 - ABIE51_RS03910 0.31 +0.2
856,940 + ABIE51_RS03910 0.31 +0.9
856,940 + ABIE51_RS03910 0.31 -0.5
856,940 + ABIE51_RS03910 0.31 +1.1
856,941 - ABIE51_RS03910 0.31 +0.2
856,941 - ABIE51_RS03910 0.31 +0.2
856,941 - ABIE51_RS03910 0.31 +0.1
856,988 + ABIE51_RS03910 0.41 +0.1
856,988 + ABIE51_RS03910 0.41 -1.5
856,988 + ABIE51_RS03910 0.41 -2.9
856,989 - ABIE51_RS03910 0.41 +0.2
857,006 + ABIE51_RS03910 0.44 +0.0
857,006 + ABIE51_RS03910 0.44 -0.8
857,006 + ABIE51_RS03910 0.44 -0.0
857,006 + ABIE51_RS03910 0.44 +0.1
857,006 + ABIE51_RS03910 0.44 +0.3
857,006 + ABIE51_RS03910 0.44 +0.7
857,006 + ABIE51_RS03910 0.44 -2.4
857,006 + ABIE51_RS03910 0.44 -0.4
857,007 - ABIE51_RS03910 0.45 +0.8
857,007 - ABIE51_RS03910 0.45 -0.7
857,007 - ABIE51_RS03910 0.45 +1.1
857,007 - ABIE51_RS03910 0.45 +0.8
857,009 + ABIE51_RS03910 0.45 +1.0
857,010 - ABIE51_RS03910 0.45 -0.4
857,021 + ABIE51_RS03910 0.47 +0.5
857,115 - ABIE51_RS03910 0.66 +1.4
857,117 + ABIE51_RS03910 0.66 -0.2
857,117 + ABIE51_RS03910 0.66 +0.0
857,117 + ABIE51_RS03910 0.66 -0.1
857,117 + ABIE51_RS03910 0.66 -1.1
857,117 + ABIE51_RS03910 0.66 -1.2
857,118 - ABIE51_RS03910 0.67 +0.3
857,118 - ABIE51_RS03910 0.67 -0.0
857,118 - ABIE51_RS03910 0.67 -1.1
857,118 - ABIE51_RS03910 0.67 +0.4
857,118 - ABIE51_RS03910 0.67 +0.4
857,118 - ABIE51_RS03910 0.67 +2.5
857,129 + ABIE51_RS03910 0.69 -0.2
857,130 - ABIE51_RS03910 0.69 +0.3
857,165 + ABIE51_RS03910 0.76 -0.4
857,165 + ABIE51_RS03910 0.76 +0.2
857,165 + ABIE51_RS03910 0.76 +0.2
857,165 + ABIE51_RS03910 0.76 +0.1
857,169 - ABIE51_RS03910 0.77 -1.7
857,169 - ABIE51_RS03910 0.77 +0.6
857,180 + ABIE51_RS03910 0.79 -0.5
857,180 + ABIE51_RS03910 0.79 +1.0
857,189 + ABIE51_RS03910 0.81 -0.4
857,190 - ABIE51_RS03910 0.81 +0.6
857,190 - ABIE51_RS03910 0.81 -0.5
857,190 - ABIE51_RS03910 0.81 +0.4
857,190 - ABIE51_RS03910 0.81 -0.7
857,190 - ABIE51_RS03910 0.81 +1.2
857,190 - ABIE51_RS03910 0.81 +1.0
857,195 + ABIE51_RS03910 0.82 +0.7
857,196 - ABIE51_RS03910 0.82 -0.3
857,198 + ABIE51_RS03910 0.83 -0.2
857,198 + ABIE51_RS03910 0.83 -0.1
857,198 + ABIE51_RS03910 0.83 -1.9
857,198 + ABIE51_RS03910 0.83 +0.1
857,198 + ABIE51_RS03910 0.83 -0.3
857,225 + ABIE51_RS03910 0.88 +2.2
857,226 - ABIE51_RS03910 0.88 +0.3
857,440 + ABIE51_RS03915 0.13 +0.6
857,440 + ABIE51_RS03915 0.13 +1.0
857,440 + ABIE51_RS03915 0.13 +1.0
857,440 + ABIE51_RS03915 0.13 -0.2
857,440 + ABIE51_RS03915 0.13 -1.3
857,441 - ABIE51_RS03915 0.13 -0.2
857,441 - ABIE51_RS03915 0.13 +0.2
857,441 - ABIE51_RS03915 0.13 +0.1
857,555 - ABIE51_RS03915 0.29 -0.4
857,555 - ABIE51_RS03915 0.29 -2.7
857,557 + ABIE51_RS03915 0.29 +0.2
857,623 + ABIE51_RS03915 0.38 +0.2
857,623 + ABIE51_RS03915 0.38 -0.2
857,623 + ABIE51_RS03915 0.38 +0.4
857,624 - ABIE51_RS03915 0.38 -0.0
857,668 + ABIE51_RS03915 0.44 -1.2
857,668 + ABIE51_RS03915 0.44 +2.1
857,668 + ABIE51_RS03915 0.44 -0.2
857,669 - ABIE51_RS03915 0.44 +0.8
857,669 - ABIE51_RS03915 0.44 +0.1
857,669 - ABIE51_RS03915 0.44 +0.5
857,669 - ABIE51_RS03915 0.44 -0.3
857,669 - ABIE51_RS03915 0.44 +0.9
857,669 - ABIE51_RS03915 0.44 +0.5
857,669 - ABIE51_RS03915 0.44 -0.9
857,669 - ABIE51_RS03915 0.44 +1.1
857,669 - ABIE51_RS03915 0.44 +0.9
857,788 + ABIE51_RS03915 0.61 -0.8
857,788 + ABIE51_RS03915 0.61 -0.0
857,789 - ABIE51_RS03915 0.61 -0.0
857,789 - ABIE51_RS03915 0.61 -2.9
858,121 + -2.0
858,122 - +1.2
858,134 + +0.5
858,134 + +0.4
858,135 - +0.3
858,135 - +0.2
858,135 - -0.4
858,211 + ABIE51_RS03920 0.13 -0.5
858,359 + ABIE51_RS03920 0.44 +0.0
858,359 + ABIE51_RS03920 0.44 +2.0
858,359 + ABIE51_RS03920 0.44 -2.0
858,360 - ABIE51_RS03920 0.44 +0.0
858,378 - ABIE51_RS03920 0.48 -0.4
858,378 - ABIE51_RS03920 0.48 +0.2
858,478 + ABIE51_RS03920 0.68 -1.3
858,479 - ABIE51_RS03920 0.69 +0.4
858,530 + ABIE51_RS03920 0.79 +0.1
858,531 - ABIE51_RS03920 0.79 -0.3
858,531 - ABIE51_RS03920 0.79 -3.2
858,531 - ABIE51_RS03920 0.79 +0.3
858,581 + ABIE51_RS03920 0.90 +0.3
858,581 + ABIE51_RS03920 0.90 -2.1
858,582 - ABIE51_RS03920 0.90 -1.8
858,599 + +0.0
858,599 + -0.1
858,599 + +0.1
858,599 + +0.4
858,600 - -0.4
858,600 - +0.4
858,600 - +0.5
858,600 - +0.2
858,600 - -0.4
858,600 - -0.3
858,600 - +0.6
858,630 - -0.2
858,790 + ABIE51_RS03925 0.12 +0.1
858,790 + ABIE51_RS03925 0.12 -0.5
858,791 - ABIE51_RS03925 0.12 -0.3
858,791 - ABIE51_RS03925 0.12 +0.7
858,791 - ABIE51_RS03925 0.12 -0.7
858,791 - ABIE51_RS03925 0.12 +0.1
858,791 - ABIE51_RS03925 0.12 +0.2
858,791 - ABIE51_RS03925 0.12 -0.4
858,792 + ABIE51_RS03925 0.12 +0.1
858,792 + ABIE51_RS03925 0.12 -0.3
858,793 - ABIE51_RS03925 0.12 -0.3
858,905 + ABIE51_RS03925 0.23 +0.3
858,905 + ABIE51_RS03925 0.23 -0.3
858,905 + ABIE51_RS03925 0.23 +0.1
858,906 - ABIE51_RS03925 0.23 +0.9
858,906 - ABIE51_RS03925 0.23 -0.4

Or see this region's nucleotide sequence