Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03905

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03895 and ABIE51_RS03900 are separated by 301 nucleotidesABIE51_RS03900 and ABIE51_RS03905 are separated by 157 nucleotidesABIE51_RS03905 and ABIE51_RS03910 are separated by 123 nucleotidesABIE51_RS03910 and ABIE51_RS03915 are separated by 65 nucleotides ABIE51_RS03895: ABIE51_RS03895 - CPXCG motif-containing cysteine-rich protein, at 854,919 to 855,107 _RS03895 ABIE51_RS03900: ABIE51_RS03900 - EF-hand domain-containing protein, at 855,409 to 855,783 _RS03900 ABIE51_RS03905: ABIE51_RS03905 - HAD family hydrolase, at 855,941 to 856,660 _RS03905 ABIE51_RS03910: ABIE51_RS03910 - hypothetical protein, at 856,784 to 857,284 _RS03910 ABIE51_RS03915: ABIE51_RS03915 - hypothetical protein, at 857,350 to 858,066 _RS03915 Position (kb) 855 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 855.003 kb on + strand, within ABIE51_RS03895at 855.003 kb on + strand, within ABIE51_RS03895at 855.004 kb on - strand, within ABIE51_RS03895at 855.004 kb on - strand, within ABIE51_RS03895at 855.004 kb on - strand, within ABIE51_RS03895at 855.043 kb on + strand, within ABIE51_RS03895at 855.043 kb on + strand, within ABIE51_RS03895at 855.043 kb on + strand, within ABIE51_RS03895at 855.043 kb on + strand, within ABIE51_RS03895at 855.043 kb on + strand, within ABIE51_RS03895at 855.260 kb on + strandat 855.302 kb on - strandat 855.724 kb on + strand, within ABIE51_RS03900at 855.724 kb on + strand, within ABIE51_RS03900at 855.724 kb on + strand, within ABIE51_RS03900at 855.724 kb on + strand, within ABIE51_RS03900at 855.725 kb on - strand, within ABIE51_RS03900at 855.725 kb on - strand, within ABIE51_RS03900at 855.725 kb on - strand, within ABIE51_RS03900at 855.725 kb on - strand, within ABIE51_RS03900at 855.733 kb on + strand, within ABIE51_RS03900at 855.733 kb on + strand, within ABIE51_RS03900at 855.734 kb on - strand, within ABIE51_RS03900at 855.734 kb on - strand, within ABIE51_RS03900at 855.734 kb on - strand, within ABIE51_RS03900at 855.781 kb on + strandat 855.781 kb on + strandat 855.782 kb on - strandat 855.782 kb on - strandat 855.782 kb on - strandat 855.879 kb on + strandat 855.879 kb on + strandat 855.879 kb on + strandat 855.879 kb on + strandat 855.879 kb on + strandat 855.880 kb on - strandat 855.880 kb on - strandat 855.880 kb on - strandat 855.880 kb on - strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.887 kb on + strandat 855.888 kb on - strandat 855.888 kb on - strandat 855.901 kb on + strandat 855.901 kb on + strandat 855.901 kb on + strandat 855.901 kb on + strandat 855.902 kb on - strandat 855.902 kb on - strandat 855.902 kb on - strandat 855.902 kb on - strandat 855.902 kb on - strandat 856.001 kb on + strandat 856.001 kb on + strandat 856.001 kb on + strandat 856.001 kb on + strandat 856.046 kb on + strand, within ABIE51_RS03905at 856.046 kb on + strand, within ABIE51_RS03905at 856.046 kb on + strand, within ABIE51_RS03905at 856.046 kb on + strand, within ABIE51_RS03905at 856.047 kb on - strand, within ABIE51_RS03905at 856.047 kb on - strand, within ABIE51_RS03905at 856.047 kb on - strand, within ABIE51_RS03905at 856.086 kb on - strand, within ABIE51_RS03905at 856.086 kb on - strand, within ABIE51_RS03905at 856.086 kb on - strand, within ABIE51_RS03905at 856.086 kb on - strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.415 kb on + strand, within ABIE51_RS03905at 856.416 kb on - strand, within ABIE51_RS03905at 856.535 kb on + strand, within ABIE51_RS03905at 856.730 kb on + strandat 856.919 kb on + strand, within ABIE51_RS03910at 856.919 kb on + strand, within ABIE51_RS03910at 856.919 kb on + strand, within ABIE51_RS03910at 856.920 kb on - strand, within ABIE51_RS03910at 856.937 kb on + strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.938 kb on - strand, within ABIE51_RS03910at 856.940 kb on + strand, within ABIE51_RS03910at 856.940 kb on + strand, within ABIE51_RS03910at 856.940 kb on + strand, within ABIE51_RS03910at 856.941 kb on - strand, within ABIE51_RS03910at 856.941 kb on - strand, within ABIE51_RS03910at 856.941 kb on - strand, within ABIE51_RS03910at 856.988 kb on + strand, within ABIE51_RS03910at 856.988 kb on + strand, within ABIE51_RS03910at 856.988 kb on + strand, within ABIE51_RS03910at 856.989 kb on - strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.006 kb on + strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.007 kb on - strand, within ABIE51_RS03910at 857.009 kb on + strand, within ABIE51_RS03910at 857.010 kb on - strand, within ABIE51_RS03910at 857.021 kb on + strand, within ABIE51_RS03910at 857.115 kb on - strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.117 kb on + strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.118 kb on - strand, within ABIE51_RS03910at 857.129 kb on + strand, within ABIE51_RS03910at 857.130 kb on - strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.165 kb on + strand, within ABIE51_RS03910at 857.169 kb on - strand, within ABIE51_RS03910at 857.169 kb on - strand, within ABIE51_RS03910at 857.180 kb on + strand, within ABIE51_RS03910at 857.180 kb on + strand, within ABIE51_RS03910at 857.189 kb on + strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.190 kb on - strand, within ABIE51_RS03910at 857.195 kb on + strand, within ABIE51_RS03910at 857.196 kb on - strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.198 kb on + strand, within ABIE51_RS03910at 857.225 kb on + strand, within ABIE51_RS03910at 857.226 kb on - strand, within ABIE51_RS03910at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.440 kb on + strand, within ABIE51_RS03915at 857.441 kb on - strand, within ABIE51_RS03915at 857.441 kb on - strand, within ABIE51_RS03915at 857.441 kb on - strand, within ABIE51_RS03915at 857.555 kb on - strand, within ABIE51_RS03915at 857.555 kb on - strand, within ABIE51_RS03915at 857.557 kb on + strand, within ABIE51_RS03915at 857.623 kb on + strand, within ABIE51_RS03915at 857.623 kb on + strand, within ABIE51_RS03915at 857.623 kb on + strand, within ABIE51_RS03915at 857.624 kb on - strand, within ABIE51_RS03915

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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855,003 + ABIE51_RS03895 0.44 -1.5
855,003 + ABIE51_RS03895 0.44 +0.6
855,004 - ABIE51_RS03895 0.45 -0.8
855,004 - ABIE51_RS03895 0.45 -1.3
855,004 - ABIE51_RS03895 0.45 -0.2
855,043 + ABIE51_RS03895 0.66 +0.0
855,043 + ABIE51_RS03895 0.66 -0.1
855,043 + ABIE51_RS03895 0.66 -0.0
855,043 + ABIE51_RS03895 0.66 -3.1
855,043 + ABIE51_RS03895 0.66 -0.0
855,260 + -1.9
855,302 - +0.0
855,724 + ABIE51_RS03900 0.84 -0.0
855,724 + ABIE51_RS03900 0.84 +0.2
855,724 + ABIE51_RS03900 0.84 +0.8
855,724 + ABIE51_RS03900 0.84 -0.1
855,725 - ABIE51_RS03900 0.84 +0.4
855,725 - ABIE51_RS03900 0.84 -1.0
855,725 - ABIE51_RS03900 0.84 +0.2
855,725 - ABIE51_RS03900 0.84 -0.1
855,733 + ABIE51_RS03900 0.86 +0.3
855,733 + ABIE51_RS03900 0.86 +1.6
855,734 - ABIE51_RS03900 0.87 +1.2
855,734 - ABIE51_RS03900 0.87 -1.9
855,734 - ABIE51_RS03900 0.87 -0.2
855,781 + +0.0
855,781 + +1.5
855,782 - +0.2
855,782 - +0.5
855,782 - -0.5
855,879 + -0.6
855,879 + +0.9
855,879 + -0.0
855,879 + +0.7
855,879 + +0.9
855,880 - -0.9
855,880 - -0.4
855,880 - +0.4
855,880 - +0.2
855,887 + +0.1
855,887 + +1.1
855,887 + +0.0
855,887 + -0.3
855,887 + +0.7
855,887 + -2.5
855,887 + -0.2
855,887 + +0.2
855,888 - +0.3
855,888 - +0.4
855,901 + -1.8
855,901 + -1.5
855,901 + +0.3
855,901 + -0.5
855,902 - -0.0
855,902 - -0.2
855,902 - +0.9
855,902 - +0.6
855,902 - -0.7
856,001 + -0.6
856,001 + -0.1
856,001 + +0.5
856,001 + -0.1
856,046 + ABIE51_RS03905 0.15 +0.3
856,046 + ABIE51_RS03905 0.15 +0.5
856,046 + ABIE51_RS03905 0.15 -0.2
856,046 + ABIE51_RS03905 0.15 +1.1
856,047 - ABIE51_RS03905 0.15 +1.0
856,047 - ABIE51_RS03905 0.15 -0.0
856,047 - ABIE51_RS03905 0.15 -0.2
856,086 - ABIE51_RS03905 0.20 -1.8
856,086 - ABIE51_RS03905 0.20 +0.4
856,086 - ABIE51_RS03905 0.20 +0.4
856,086 - ABIE51_RS03905 0.20 -0.6
856,415 + ABIE51_RS03905 0.66 +0.4
856,415 + ABIE51_RS03905 0.66 -1.0
856,415 + ABIE51_RS03905 0.66 +2.4
856,415 + ABIE51_RS03905 0.66 -0.5
856,416 - ABIE51_RS03905 0.66 -0.4
856,535 + ABIE51_RS03905 0.82 +1.5
856,730 + +0.3
856,919 + ABIE51_RS03910 0.27 -0.7
856,919 + ABIE51_RS03910 0.27 +0.7
856,919 + ABIE51_RS03910 0.27 -0.3
856,920 - ABIE51_RS03910 0.27 -0.1
856,937 + ABIE51_RS03910 0.31 -0.9
856,938 - ABIE51_RS03910 0.31 +1.6
856,938 - ABIE51_RS03910 0.31 +0.2
856,938 - ABIE51_RS03910 0.31 -0.5
856,938 - ABIE51_RS03910 0.31 +0.2
856,940 + ABIE51_RS03910 0.31 +0.9
856,940 + ABIE51_RS03910 0.31 -0.5
856,940 + ABIE51_RS03910 0.31 +1.1
856,941 - ABIE51_RS03910 0.31 +0.2
856,941 - ABIE51_RS03910 0.31 +0.2
856,941 - ABIE51_RS03910 0.31 +0.1
856,988 + ABIE51_RS03910 0.41 +0.1
856,988 + ABIE51_RS03910 0.41 -1.5
856,988 + ABIE51_RS03910 0.41 -2.9
856,989 - ABIE51_RS03910 0.41 +0.2
857,006 + ABIE51_RS03910 0.44 +0.0
857,006 + ABIE51_RS03910 0.44 -0.8
857,006 + ABIE51_RS03910 0.44 -0.0
857,006 + ABIE51_RS03910 0.44 +0.1
857,006 + ABIE51_RS03910 0.44 +0.3
857,006 + ABIE51_RS03910 0.44 +0.7
857,006 + ABIE51_RS03910 0.44 -2.4
857,006 + ABIE51_RS03910 0.44 -0.4
857,007 - ABIE51_RS03910 0.45 +0.8
857,007 - ABIE51_RS03910 0.45 -0.7
857,007 - ABIE51_RS03910 0.45 +1.1
857,007 - ABIE51_RS03910 0.45 +0.8
857,009 + ABIE51_RS03910 0.45 +1.0
857,010 - ABIE51_RS03910 0.45 -0.4
857,021 + ABIE51_RS03910 0.47 +0.5
857,115 - ABIE51_RS03910 0.66 +1.4
857,117 + ABIE51_RS03910 0.66 -0.2
857,117 + ABIE51_RS03910 0.66 +0.0
857,117 + ABIE51_RS03910 0.66 -0.1
857,117 + ABIE51_RS03910 0.66 -1.1
857,117 + ABIE51_RS03910 0.66 -1.2
857,118 - ABIE51_RS03910 0.67 +0.3
857,118 - ABIE51_RS03910 0.67 -0.0
857,118 - ABIE51_RS03910 0.67 -1.1
857,118 - ABIE51_RS03910 0.67 +0.4
857,118 - ABIE51_RS03910 0.67 +0.4
857,118 - ABIE51_RS03910 0.67 +2.5
857,129 + ABIE51_RS03910 0.69 -0.2
857,130 - ABIE51_RS03910 0.69 +0.3
857,165 + ABIE51_RS03910 0.76 -0.4
857,165 + ABIE51_RS03910 0.76 +0.2
857,165 + ABIE51_RS03910 0.76 +0.2
857,165 + ABIE51_RS03910 0.76 +0.1
857,169 - ABIE51_RS03910 0.77 -1.7
857,169 - ABIE51_RS03910 0.77 +0.6
857,180 + ABIE51_RS03910 0.79 -0.5
857,180 + ABIE51_RS03910 0.79 +1.0
857,189 + ABIE51_RS03910 0.81 -0.4
857,190 - ABIE51_RS03910 0.81 +0.6
857,190 - ABIE51_RS03910 0.81 -0.5
857,190 - ABIE51_RS03910 0.81 +0.4
857,190 - ABIE51_RS03910 0.81 -0.7
857,190 - ABIE51_RS03910 0.81 +1.2
857,190 - ABIE51_RS03910 0.81 +1.0
857,195 + ABIE51_RS03910 0.82 +0.7
857,196 - ABIE51_RS03910 0.82 -0.3
857,198 + ABIE51_RS03910 0.83 -0.2
857,198 + ABIE51_RS03910 0.83 -0.1
857,198 + ABIE51_RS03910 0.83 -1.9
857,198 + ABIE51_RS03910 0.83 +0.1
857,198 + ABIE51_RS03910 0.83 -0.3
857,225 + ABIE51_RS03910 0.88 +2.2
857,226 - ABIE51_RS03910 0.88 +0.3
857,440 + ABIE51_RS03915 0.13 +0.6
857,440 + ABIE51_RS03915 0.13 +1.0
857,440 + ABIE51_RS03915 0.13 +1.0
857,440 + ABIE51_RS03915 0.13 -0.2
857,440 + ABIE51_RS03915 0.13 -1.3
857,441 - ABIE51_RS03915 0.13 -0.2
857,441 - ABIE51_RS03915 0.13 +0.2
857,441 - ABIE51_RS03915 0.13 +0.1
857,555 - ABIE51_RS03915 0.29 -0.4
857,555 - ABIE51_RS03915 0.29 -2.7
857,557 + ABIE51_RS03915 0.29 +0.2
857,623 + ABIE51_RS03915 0.38 +0.2
857,623 + ABIE51_RS03915 0.38 -0.2
857,623 + ABIE51_RS03915 0.38 +0.4
857,624 - ABIE51_RS03915 0.38 -0.0

Or see this region's nucleotide sequence