Strain Fitness in Sinorhizobium meliloti 1021 around SMc01141

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01142 and SMc01141 are separated by 339 nucleotidesSMc01141 and SMc01140 are separated by 174 nucleotides SMc01142: SMc01142 - heat shock protein GrpE, at 408,808 to 409,434 SMc01142 SMc01141: SMc01141 - nitrogen regulatory IIA protein, at 409,774 to 410,238 SMc01141 SMc01140: SMc01140 - SIGMA54 modulation protein, at 410,413 to 410,985 SMc01140 Position (kb) 409 410 411Strain fitness (log2 ratio) -1 0 1at 409.433 kb on - strandat 409.591 kb on - strandat 409.591 kb on - strandat 409.636 kb on - strandat 409.772 kb on - strandat 409.772 kb on - strandat 410.425 kb on - strandat 410.425 kb on - strandat 410.449 kb on - strandat 411.112 kb on + strandat 411.112 kb on + strandat 411.112 kb on + strandat 411.113 kb on - strandat 411.113 kb on - strandat 411.139 kb on - strandat 411.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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409,433 - -0.1
409,591 - +0.3
409,591 - -0.7
409,636 - +0.9
409,772 - +0.4
409,772 - -0.8
410,425 - -0.4
410,425 - +1.4
410,449 - -0.1
411,112 + -0.3
411,112 + -0.6
411,112 + -0.8
411,113 - -0.1
411,113 - +0.2
411,139 - +0.3
411,238 - +0.0

Or see this region's nucleotide sequence