Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1311 and SMa1313 are separated by 229 nucleotides SMa1313 and SMa1315 overlap by 1 nucleotides SMa1315 and SMa1318 overlap by 8 nucleotides SMa1318 and SMa1319 are separated by 4 nucleotides SMa1319 and SMa1321 overlap by 4 nucleotides
SMa1311: SMa1311 - VirB6 type IV secretion protein, at 715,261 to 716,202
SMa1311
SMa1313: SMa1313 - VirB5 type IV secretion protein, at 716,432 to 717,133
SMa1313
SMa1315: SMa1315 - VirB4 type IV secretion protein, at 717,133 to 719,511
SMa1315
SMa1318: SMa1318 - VirB3 type IV secretion protein, at 719,504 to 719,845
SMa1318
SMa1319: SMa1319 - VirB2 type IV secretion protein, at 719,850 to 720,149
SMa1319
SMa1321: SMa1321 - VirB1 type IV secretion protein, at 720,146 to 720,817
SMa1321
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.365 kb on + strand at 716.366 kb on - strand at 716.366 kb on - strand at 716.402 kb on + strand at 716.402 kb on + strand at 716.547 kb on - strand, within SMa1313 at 716.679 kb on + strand, within SMa1313 at 716.745 kb on + strand, within SMa1313 at 716.745 kb on + strand, within SMa1313 at 716.773 kb on - strand, within SMa1313 at 716.779 kb on + strand, within SMa1313 at 716.779 kb on + strand, within SMa1313 at 716.780 kb on - strand, within SMa1313 at 717.116 kb on - strand at 717.116 kb on - strand at 717.298 kb on - strand at 717.392 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.653 kb on + strand, within SMa1315 at 717.654 kb on - strand, within SMa1315 at 717.708 kb on - strand, within SMa1315 at 718.007 kb on - strand, within SMa1315 at 718.064 kb on + strand, within SMa1315 at 718.064 kb on + strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.065 kb on - strand, within SMa1315 at 718.088 kb on + strand, within SMa1315 at 718.111 kb on - strand, within SMa1315 at 718.144 kb on + strand, within SMa1315 at 718.241 kb on + strand, within SMa1315 at 718.241 kb on + strand, within SMa1315 at 718.381 kb on - strand, within SMa1315 at 718.399 kb on + strand, within SMa1315 at 718.793 kb on + strand, within SMa1315 at 718.794 kb on - strand, within SMa1315 at 718.856 kb on + strand, within SMa1315 at 718.857 kb on - strand, within SMa1315 at 719.153 kb on + strand, within SMa1315 at 719.153 kb on + strand, within SMa1315 at 719.154 kb on - strand, within SMa1315 at 719.199 kb on - strand, within SMa1315 at 719.202 kb on + strand, within SMa1315 at 719.202 kb on + strand, within SMa1315 at 719.202 kb on + strand, within SMa1315 at 719.202 kb on + strand, within SMa1315 at 719.202 kb on + strand, within SMa1315 at 719.202 kb on + strand, within SMa1315 at 719.203 kb on - strand, within SMa1315 at 719.203 kb on - strand, within SMa1315 at 719.359 kb on - strand at 719.454 kb on - strand at 719.506 kb on - strand at 719.506 kb on - strand at 719.532 kb on + strand at 719.558 kb on - strand, within SMa1318 at 719.721 kb on + strand, within SMa1318 at 719.721 kb on + strand, within SMa1318 at 719.722 kb on - strand, within SMa1318 at 719.769 kb on - strand, within SMa1318 at 719.941 kb on + strand, within SMa1319 at 720.005 kb on + strand, within SMa1319 at 720.429 kb on + strand, within SMa1321 at 720.429 kb on + strand, within SMa1321 at 720.430 kb on - strand, within SMa1321 at 720.432 kb on + strand, within SMa1321 at 720.432 kb on + strand, within SMa1321 at 720.499 kb on - strand, within SMa1321 at 720.499 kb on - strand, within SMa1321
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 716,192 + +0.5 716,192 + -1.3 716,192 + -2.2 716,192 + +0.5 716,193 - +0.8 716,193 - -0.5 716,193 - +1.0 716,365 + +0.2 716,366 - +0.0 716,366 - +0.0 716,402 + -0.2 716,402 + -0.6 716,547 - SMa1313 0.16 +1.6 716,679 + SMa1313 0.35 -0.7 716,745 + SMa1313 0.45 +0.4 716,745 + SMa1313 0.45 +0.4 716,773 - SMa1313 0.49 +0.4 716,779 + SMa1313 0.49 -0.4 716,779 + SMa1313 0.49 -0.5 716,780 - SMa1313 0.50 +0.3 717,116 - +0.2 717,116 - +0.2 717,298 - -0.3 717,392 + SMa1315 0.11 +0.1 717,653 + SMa1315 0.22 +0.2 717,653 + SMa1315 0.22 -0.2 717,653 + SMa1315 0.22 +0.3 717,653 + SMa1315 0.22 -2.4 717,654 - SMa1315 0.22 +0.2 717,708 - SMa1315 0.24 +1.3 718,007 - SMa1315 0.37 +0.4 718,064 + SMa1315 0.39 -0.1 718,064 + SMa1315 0.39 -0.8 718,065 - SMa1315 0.39 -0.1 718,065 - SMa1315 0.39 +0.8 718,065 - SMa1315 0.39 +1.8 718,088 + SMa1315 0.40 -0.5 718,111 - SMa1315 0.41 -0.4 718,144 + SMa1315 0.42 +0.2 718,241 + SMa1315 0.47 +0.9 718,241 + SMa1315 0.47 +0.9 718,381 - SMa1315 0.52 +0.2 718,399 + SMa1315 0.53 +0.0 718,793 + SMa1315 0.70 +0.5 718,794 - SMa1315 0.70 +0.8 718,856 + SMa1315 0.72 -0.2 718,857 - SMa1315 0.72 -0.3 719,153 + SMa1315 0.85 +0.4 719,153 + SMa1315 0.85 -0.5 719,154 - SMa1315 0.85 -0.1 719,199 - SMa1315 0.87 -0.7 719,202 + SMa1315 0.87 -0.2 719,202 + SMa1315 0.87 +0.2 719,202 + SMa1315 0.87 +0.4 719,202 + SMa1315 0.87 +0.5 719,202 + SMa1315 0.87 +1.6 719,202 + SMa1315 0.87 -0.0 719,203 - SMa1315 0.87 -0.0 719,203 - SMa1315 0.87 +0.6 719,359 - -0.5 719,454 - -0.0 719,506 - -0.5 719,506 - +0.2 719,532 + -0.1 719,558 - SMa1318 0.16 +0.2 719,721 + SMa1318 0.63 -2.0 719,721 + SMa1318 0.63 +0.2 719,722 - SMa1318 0.64 +0.3 719,769 - SMa1318 0.77 -0.3 719,941 + SMa1319 0.30 -0.2 720,005 + SMa1319 0.52 -0.2 720,429 + SMa1321 0.42 +1.0 720,429 + SMa1321 0.42 +0.2 720,430 - SMa1321 0.42 -0.1 720,432 + SMa1321 0.43 +0.2 720,432 + SMa1321 0.43 +0.1 720,499 - SMa1321 0.53 -0.6 720,499 - SMa1321 0.53 +0.4
Or see this region's nucleotide sequence