Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20834 and SM_b20835 are separated by 88 nucleotides SM_b20835 and SM_b20836 overlap by 20 nucleotides SM_b20836 and SM_b20837 are separated by 540 nucleotides
SM_b20834: SM_b20834 - surface saccharide synthesis protein, at 625,738 to 627,036
_b20834
SM_b20835: SM_b20835 - hypothetical protein, at 627,125 to 628,120
_b20835
SM_b20836: SM_b20836 - heme-binding protein, at 628,101 to 628,430
_b20836
SM_b20837: SM_b20837 - hypothetical protein, at 628,971 to 629,195
_b20837
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.139 kb on - strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.213 kb on + strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.489 kb on + strand, within SM_b20834 at 626.490 kb on - strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.526 kb on - strand, within SM_b20834 at 626.547 kb on + strand, within SM_b20834 at 626.606 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.737 kb on + strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.915 kb on + strand at 626.998 kb on - strand at 627.068 kb on + strand at 627.069 kb on - strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.073 kb on - strand at 627.073 kb on - strand at 627.073 kb on - strand at 627.109 kb on + strand at 627.110 kb on - strand at 627.226 kb on + strand, within SM_b20835 at 627.226 kb on + strand, within SM_b20835 at 627.262 kb on - strand, within SM_b20835 at 627.277 kb on - strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.436 kb on - strand, within SM_b20835 at 627.448 kb on + strand, within SM_b20835 at 627.449 kb on - strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.502 kb on - strand, within SM_b20835 at 627.569 kb on - strand, within SM_b20835 at 627.627 kb on + strand, within SM_b20835 at 627.628 kb on - strand, within SM_b20835 at 627.666 kb on + strand, within SM_b20835 at 627.667 kb on - strand, within SM_b20835 at 627.679 kb on - strand, within SM_b20835 at 627.753 kb on - strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.829 kb on - strand, within SM_b20835 at 627.885 kb on + strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 628.107 kb on + strand at 628.130 kb on + strand at 628.131 kb on - strand at 628.232 kb on + strand, within SM_b20836 at 628.233 kb on - strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.359 kb on - strand, within SM_b20836 at 628.405 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.477 kb on - strand at 628.477 kb on - strand at 628.481 kb on + strand at 628.481 kb on + strand at 628.481 kb on + strand at 628.482 kb on - strand at 628.505 kb on - strand at 628.644 kb on + strand at 628.645 kb on - strand at 628.645 kb on - strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.698 kb on - strand at 628.698 kb on - strand at 628.698 kb on - strand at 628.854 kb on + strand at 628.855 kb on - strand at 628.972 kb on + strand at 628.972 kb on + strand at 628.972 kb on + strand at 628.973 kb on - strand at 628.973 kb on - strand at 628.973 kb on - strand at 628.974 kb on + strand at 629.059 kb on + strand, within SM_b20837 at 629.059 kb on + strand, within SM_b20837
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 626,138 + SM_b20834 0.31 -1.2 626,138 + SM_b20834 0.31 -1.0 626,138 + SM_b20834 0.31 -0.8 626,139 - SM_b20834 0.31 -1.0 626,211 + SM_b20834 0.36 -0.5 626,211 + SM_b20834 0.36 -0.0 626,211 + SM_b20834 0.36 -0.6 626,212 - SM_b20834 0.36 -1.5 626,212 - SM_b20834 0.36 -0.6 626,212 - SM_b20834 0.36 -0.3 626,213 + SM_b20834 0.37 -1.1 626,214 - SM_b20834 0.37 -0.9 626,214 - SM_b20834 0.37 +0.0 626,489 + SM_b20834 0.58 -0.7 626,490 - SM_b20834 0.58 -0.8 626,525 + SM_b20834 0.61 -1.9 626,525 + SM_b20834 0.61 -0.2 626,526 - SM_b20834 0.61 +0.2 626,547 + SM_b20834 0.62 -1.1 626,606 + SM_b20834 0.67 +0.4 626,654 + SM_b20834 0.71 +1.2 626,654 + SM_b20834 0.71 +0.2 626,737 + SM_b20834 0.77 -1.1 626,738 - SM_b20834 0.77 -1.2 626,738 - SM_b20834 0.77 -0.7 626,915 + -0.8 626,998 - -0.5 627,068 + -1.0 627,069 - -2.6 627,072 + -1.0 627,072 + -0.4 627,072 + -0.8 627,072 + -0.0 627,072 + -2.2 627,072 + -3.0 627,072 + -1.4 627,073 - +0.4 627,073 - +0.7 627,073 - +0.1 627,109 + -0.3 627,110 - +0.5 627,226 + SM_b20835 0.10 +0.4 627,226 + SM_b20835 0.10 +1.0 627,262 - SM_b20835 0.14 -0.7 627,277 - SM_b20835 0.15 +0.7 627,405 + SM_b20835 0.28 -2.0 627,405 + SM_b20835 0.28 -0.4 627,405 + SM_b20835 0.28 -0.4 627,405 + SM_b20835 0.28 +0.1 627,405 + SM_b20835 0.28 +1.4 627,406 - SM_b20835 0.28 +0.5 627,406 - SM_b20835 0.28 -0.0 627,406 - SM_b20835 0.28 -0.2 627,436 - SM_b20835 0.31 -0.1 627,448 + SM_b20835 0.32 +0.3 627,449 - SM_b20835 0.33 +1.6 627,501 + SM_b20835 0.38 -0.2 627,501 + SM_b20835 0.38 +0.4 627,501 + SM_b20835 0.38 +0.8 627,501 + SM_b20835 0.38 +0.3 627,502 - SM_b20835 0.38 -0.2 627,569 - SM_b20835 0.45 +2.4 627,627 + SM_b20835 0.50 +0.1 627,628 - SM_b20835 0.51 +0.0 627,666 + SM_b20835 0.54 +0.1 627,667 - SM_b20835 0.54 -0.6 627,679 - SM_b20835 0.56 +0.2 627,753 - SM_b20835 0.63 +1.4 627,777 + SM_b20835 0.65 -0.8 627,777 + SM_b20835 0.65 -0.3 627,778 - SM_b20835 0.66 +0.5 627,778 - SM_b20835 0.66 +0.6 627,829 - SM_b20835 0.71 +0.0 627,885 + SM_b20835 0.76 -0.4 627,886 - SM_b20835 0.76 -0.3 627,886 - SM_b20835 0.76 -0.5 627,886 - SM_b20835 0.76 -0.0 628,107 + -0.5 628,130 + +1.8 628,131 - -0.0 628,232 + SM_b20836 0.40 +0.4 628,233 - SM_b20836 0.40 -0.5 628,321 + SM_b20836 0.67 -0.1 628,321 + SM_b20836 0.67 +0.1 628,321 + SM_b20836 0.67 +0.7 628,359 - SM_b20836 0.78 -0.1 628,405 + -0.1 628,476 + +0.2 628,476 + -0.0 628,477 - -0.1 628,477 - -0.7 628,481 + +0.1 628,481 + +0.4 628,481 + -0.4 628,482 - +0.3 628,505 - +1.0 628,644 + -0.4 628,645 - -0.1 628,645 - -0.2 628,697 + +0.4 628,697 + -0.0 628,697 + +0.2 628,697 + -0.1 628,697 + +0.7 628,698 - +0.3 628,698 - -1.0 628,698 - +0.2 628,854 + -1.3 628,855 - -1.1 628,972 + +0.2 628,972 + +0.2 628,972 + +0.2 628,973 - -0.8 628,973 - -0.8 628,973 - -0.2 628,974 + -0.4 629,059 + SM_b20837 0.39 +0.1 629,059 + SM_b20837 0.39 -0.0
Or see this region's nucleotide sequence