Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20396 and SM_b20397 overlap by 4 nucleotides SM_b20397 and SM_b20398 are separated by 166 nucleotides SM_b20398 and SM_b20399 are separated by 83 nucleotides SM_b20399 and SM_b20400 are separated by 9 nucleotides SM_b20400 and SM_b20401 are separated by 26 nucleotides
SM_b20396: SM_b20396 - dehydrogenase, at 411,473 to 412,456
_b20396
SM_b20397: SM_b20397 - oxidoreductase, at 412,453 to 413,019
_b20397
SM_b20398: SM_b20398 - hypothetical protein, at 413,186 to 413,680
_b20398
SM_b20399: SM_b20399 - hypothetical protein, at 413,764 to 414,354
_b20399
SM_b20400: SM_b20400 - hypothetical protein, at 414,364 to 414,627
_b20400
SM_b20401: SM_b20401 - hypothetical protein, at 414,654 to 414,827
_b20401
Position (kb) 413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.243 kb on + strand, within SM_b20396 at 412.243 kb on + strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.441 kb on - strand at 412.508 kb on + strand at 412.508 kb on + strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.670 kb on + strand, within SM_b20397 at 412.696 kb on + strand, within SM_b20397 at 412.696 kb on + strand, within SM_b20397 at 412.697 kb on - strand, within SM_b20397 at 412.870 kb on - strand, within SM_b20397 at 413.132 kb on - strand at 413.192 kb on + strand at 413.192 kb on + strand at 413.193 kb on - strand at 413.193 kb on - strand at 413.374 kb on + strand, within SM_b20398 at 413.471 kb on + strand, within SM_b20398 at 413.472 kb on - strand, within SM_b20398 at 413.517 kb on - strand, within SM_b20398 at 413.656 kb on + strand at 413.695 kb on - strand at 413.721 kb on - strand at 413.750 kb on + strand at 413.751 kb on - strand at 413.777 kb on + strand at 413.777 kb on + strand at 413.778 kb on - strand at 413.830 kb on - strand, within SM_b20399 at 413.947 kb on + strand, within SM_b20399 at 413.948 kb on - strand, within SM_b20399 at 414.076 kb on + strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.422 kb on + strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 412,243 + SM_b20396 0.78 +1.1 412,243 + SM_b20396 0.78 -0.4 412,244 - SM_b20396 0.78 +0.1 412,244 - SM_b20396 0.78 -2.1 412,244 - SM_b20396 0.78 +1.9 412,441 - +0.1 412,508 + -0.1 412,508 + -0.7 412,509 - -0.3 412,509 - +0.2 412,509 - +0.5 412,670 + SM_b20397 0.38 -0.2 412,696 + SM_b20397 0.43 -0.9 412,696 + SM_b20397 0.43 +0.1 412,697 - SM_b20397 0.43 -0.6 412,870 - SM_b20397 0.74 +0.5 413,132 - +0.0 413,192 + -0.4 413,192 + +0.7 413,193 - -0.5 413,193 - +0.7 413,374 + SM_b20398 0.38 +1.0 413,471 + SM_b20398 0.58 +0.7 413,472 - SM_b20398 0.58 +0.5 413,517 - SM_b20398 0.67 +0.2 413,656 + +0.7 413,695 - -0.1 413,721 - +0.9 413,750 + -0.5 413,751 - +0.1 413,777 + -0.5 413,777 + -0.0 413,778 - +0.4 413,830 - SM_b20399 0.11 +0.1 413,947 + SM_b20399 0.31 +0.1 413,948 - SM_b20399 0.31 +0.1 414,076 + SM_b20399 0.53 +0.3 414,077 - SM_b20399 0.53 -0.2 414,077 - SM_b20399 0.53 -0.3 414,232 + SM_b20399 0.79 -0.8 414,232 + SM_b20399 0.79 +0.4 414,233 - SM_b20399 0.79 -0.2 414,233 - SM_b20399 0.79 -0.7 414,233 - SM_b20399 0.79 +0.5 414,285 - SM_b20399 0.88 -0.2 414,285 - SM_b20399 0.88 -0.0 414,422 + SM_b20400 0.22 -0.0 414,423 - SM_b20400 0.22 -1.1 414,423 - SM_b20400 0.22 +0.3 414,539 + SM_b20400 0.66 +0.4 414,539 + SM_b20400 0.66 -0.2 414,567 - SM_b20400 0.77 -1.0 414,567 - SM_b20400 0.77 +0.2 414,618 - -0.3
Or see this region's nucleotide sequence