Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4919 and Psyr_4920 are separated by 117 nucleotides Psyr_4920 and Psyr_4921 are separated by 0 nucleotides
Psyr_4919: Psyr_4919 - type III effector protein AvrPto1, at 5,833,215 to 5,833,706
_4919
Psyr_4920: Psyr_4920 - conserved hypothetical bacteriophage protein, at 5,833,824 to 5,834,417
_4920
Psyr_4921: Psyr_4921 - hypothetical protein, at 5,834,418 to 5,834,795
_4921
Position (kb) 5833
5834
5835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5832.962 kb on - strand at 5832.998 kb on + strand at 5832.998 kb on + strand at 5833.017 kb on + strand at 5833.049 kb on - strand at 5833.052 kb on + strand at 5833.052 kb on + strand at 5833.053 kb on - strand at 5833.116 kb on + strand at 5833.117 kb on - strand at 5833.275 kb on + strand, within Psyr_4919 at 5833.275 kb on + strand, within Psyr_4919 at 5833.275 kb on + strand, within Psyr_4919 at 5833.276 kb on - strand, within Psyr_4919 at 5833.277 kb on + strand, within Psyr_4919 at 5833.277 kb on + strand, within Psyr_4919 at 5833.278 kb on - strand, within Psyr_4919 at 5833.284 kb on - strand, within Psyr_4919 at 5833.368 kb on + strand, within Psyr_4919 at 5833.368 kb on + strand, within Psyr_4919 at 5833.368 kb on + strand, within Psyr_4919 at 5833.368 kb on + strand, within Psyr_4919 at 5833.368 kb on + strand, within Psyr_4919 at 5833.369 kb on - strand, within Psyr_4919 at 5833.369 kb on - strand, within Psyr_4919 at 5833.369 kb on - strand, within Psyr_4919 at 5833.370 kb on + strand, within Psyr_4919 at 5833.370 kb on + strand, within Psyr_4919 at 5833.370 kb on + strand, within Psyr_4919 at 5833.370 kb on + strand, within Psyr_4919 at 5833.370 kb on + strand, within Psyr_4919 at 5833.370 kb on + strand, within Psyr_4919 at 5833.371 kb on - strand, within Psyr_4919 at 5833.371 kb on - strand, within Psyr_4919 at 5833.371 kb on - strand, within Psyr_4919 at 5833.371 kb on - strand, within Psyr_4919 at 5833.371 kb on - strand, within Psyr_4919 at 5833.371 kb on - strand, within Psyr_4919 at 5833.445 kb on + strand, within Psyr_4919 at 5833.445 kb on + strand, within Psyr_4919 at 5833.445 kb on + strand, within Psyr_4919 at 5833.445 kb on + strand, within Psyr_4919 at 5833.445 kb on + strand, within Psyr_4919 at 5833.445 kb on + strand, within Psyr_4919 at 5833.446 kb on - strand, within Psyr_4919 at 5833.446 kb on - strand, within Psyr_4919 at 5833.446 kb on - strand, within Psyr_4919 at 5833.446 kb on - strand, within Psyr_4919 at 5833.446 kb on - strand, within Psyr_4919 at 5833.501 kb on + strand, within Psyr_4919 at 5833.535 kb on + strand, within Psyr_4919 at 5833.535 kb on + strand, within Psyr_4919 at 5833.538 kb on + strand, within Psyr_4919 at 5833.614 kb on + strand, within Psyr_4919 at 5833.614 kb on + strand, within Psyr_4919 at 5833.614 kb on + strand, within Psyr_4919 at 5833.615 kb on - strand, within Psyr_4919 at 5833.637 kb on + strand, within Psyr_4919 at 5833.640 kb on + strand, within Psyr_4919 at 5833.640 kb on + strand, within Psyr_4919 at 5833.641 kb on - strand, within Psyr_4919 at 5833.641 kb on - strand, within Psyr_4919 at 5833.695 kb on + strand at 5833.695 kb on + strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.696 kb on - strand at 5833.697 kb on + strand at 5833.697 kb on + strand at 5833.697 kb on + strand at 5833.698 kb on - strand at 5833.710 kb on + strand at 5833.710 kb on + strand at 5833.710 kb on + strand at 5833.711 kb on - strand at 5833.711 kb on - strand at 5833.711 kb on - strand at 5833.734 kb on + strand at 5833.734 kb on + strand at 5833.735 kb on - strand at 5833.780 kb on + strand at 5833.780 kb on + strand at 5833.780 kb on + strand at 5833.781 kb on - strand at 5833.782 kb on + strand at 5833.783 kb on - strand at 5833.783 kb on - strand at 5833.788 kb on - strand at 5833.800 kb on + strand at 5833.858 kb on - strand at 5833.898 kb on + strand, within Psyr_4920 at 5833.899 kb on - strand, within Psyr_4920 at 5833.949 kb on + strand, within Psyr_4920 at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.419 kb on + strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.420 kb on - strand at 5834.476 kb on + strand, within Psyr_4921 at 5834.476 kb on + strand, within Psyr_4921 at 5834.476 kb on + strand, within Psyr_4921 at 5834.476 kb on + strand, within Psyr_4921 at 5834.476 kb on + strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.477 kb on - strand, within Psyr_4921 at 5834.483 kb on + strand, within Psyr_4921 at 5834.483 kb on + strand, within Psyr_4921 at 5834.484 kb on - strand, within Psyr_4921 at 5834.514 kb on + strand, within Psyr_4921 at 5834.515 kb on - strand, within Psyr_4921 at 5834.515 kb on - strand, within Psyr_4921 at 5834.574 kb on - strand, within Psyr_4921 at 5834.574 kb on - strand, within Psyr_4921 at 5834.634 kb on + strand, within Psyr_4921 at 5834.634 kb on + strand, within Psyr_4921 at 5834.635 kb on - strand, within Psyr_4921 at 5834.635 kb on - strand, within Psyr_4921 at 5834.769 kb on + strand at 5834.770 kb on - strand at 5834.770 kb on - strand at 5834.770 kb on - strand at 5834.857 kb on + strand at 5834.857 kb on + strand at 5834.858 kb on - strand at 5834.858 kb on - strand at 5834.878 kb on + strand at 5834.930 kb on - strand at 5834.930 kb on - strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.989 kb on + strand at 5834.990 kb on - strand at 5834.990 kb on - strand at 5834.990 kb on - strand at 5834.990 kb on - strand at 5834.990 kb on - strand at 5834.990 kb on - strand at 5835.036 kb on + strand at 5835.036 kb on + strand at 5835.036 kb on + strand at 5835.036 kb on + strand at 5835.037 kb on - strand at 5835.037 kb on - strand at 5835.106 kb on + strand at 5835.118 kb on + strand at 5835.118 kb on + strand at 5835.118 kb on + strand at 5835.166 kb on + strand at 5835.166 kb on + strand at 5835.167 kb on - strand at 5835.167 kb on - strand at 5835.167 kb on - strand at 5835.167 kb on - strand at 5835.173 kb on + strand at 5835.173 kb on + strand at 5835.174 kb on - strand at 5835.255 kb on + strand at 5835.255 kb on + strand at 5835.255 kb on + strand at 5835.255 kb on + strand at 5835.256 kb on - strand at 5835.256 kb on - strand at 5835.294 kb on + strand at 5835.295 kb on - strand at 5835.295 kb on - strand at 5835.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 5,832,962 - -1.0 5,832,998 + -1.0 5,832,998 + -0.5 5,833,017 + +1.0 5,833,049 - -0.4 5,833,052 + +1.0 5,833,052 + -0.2 5,833,053 - +0.2 5,833,116 + -0.0 5,833,117 - -0.5 5,833,275 + Psyr_4919 0.12 +0.2 5,833,275 + Psyr_4919 0.12 -0.8 5,833,275 + Psyr_4919 0.12 -0.6 5,833,276 - Psyr_4919 0.12 +0.6 5,833,277 + Psyr_4919 0.13 +0.7 5,833,277 + Psyr_4919 0.13 -1.3 5,833,278 - Psyr_4919 0.13 +0.2 5,833,284 - Psyr_4919 0.14 -0.8 5,833,368 + Psyr_4919 0.31 -0.1 5,833,368 + Psyr_4919 0.31 +0.3 5,833,368 + Psyr_4919 0.31 +0.6 5,833,368 + Psyr_4919 0.31 +0.3 5,833,368 + Psyr_4919 0.31 -0.8 5,833,369 - Psyr_4919 0.31 +0.2 5,833,369 - Psyr_4919 0.31 -0.3 5,833,369 - Psyr_4919 0.31 +0.2 5,833,370 + Psyr_4919 0.32 -0.2 5,833,370 + Psyr_4919 0.32 +0.3 5,833,370 + Psyr_4919 0.32 +0.8 5,833,370 + Psyr_4919 0.32 -0.3 5,833,370 + Psyr_4919 0.32 -1.3 5,833,370 + Psyr_4919 0.32 -1.2 5,833,371 - Psyr_4919 0.32 +0.8 5,833,371 - Psyr_4919 0.32 -0.1 5,833,371 - Psyr_4919 0.32 -0.1 5,833,371 - Psyr_4919 0.32 +0.0 5,833,371 - Psyr_4919 0.32 -0.1 5,833,371 - Psyr_4919 0.32 -0.3 5,833,445 + Psyr_4919 0.47 -1.4 5,833,445 + Psyr_4919 0.47 -0.0 5,833,445 + Psyr_4919 0.47 -0.2 5,833,445 + Psyr_4919 0.47 -3.1 5,833,445 + Psyr_4919 0.47 +0.2 5,833,445 + Psyr_4919 0.47 -0.8 5,833,446 - Psyr_4919 0.47 +0.7 5,833,446 - Psyr_4919 0.47 -0.1 5,833,446 - Psyr_4919 0.47 -0.5 5,833,446 - Psyr_4919 0.47 -0.3 5,833,446 - Psyr_4919 0.47 +0.9 5,833,501 + Psyr_4919 0.58 +0.7 5,833,535 + Psyr_4919 0.65 +0.0 5,833,535 + Psyr_4919 0.65 +0.0 5,833,538 + Psyr_4919 0.66 +0.5 5,833,614 + Psyr_4919 0.81 +1.0 5,833,614 + Psyr_4919 0.81 +1.6 5,833,614 + Psyr_4919 0.81 -1.4 5,833,615 - Psyr_4919 0.81 -0.8 5,833,637 + Psyr_4919 0.86 -1.6 5,833,640 + Psyr_4919 0.86 -0.3 5,833,640 + Psyr_4919 0.86 -0.4 5,833,641 - Psyr_4919 0.87 -0.6 5,833,641 - Psyr_4919 0.87 +1.2 5,833,695 + -1.7 5,833,695 + +1.3 5,833,696 - +1.2 5,833,696 - +1.9 5,833,696 - +1.6 5,833,696 - -0.2 5,833,696 - +0.7 5,833,696 - +0.5 5,833,696 - +0.8 5,833,696 - +1.2 5,833,697 + -0.4 5,833,697 + -0.1 5,833,697 + -1.2 5,833,698 - -0.7 5,833,710 + +0.5 5,833,710 + +0.4 5,833,710 + +0.2 5,833,711 - +1.2 5,833,711 - +0.8 5,833,711 - +0.2 5,833,734 + -0.7 5,833,734 + -2.2 5,833,735 - -0.1 5,833,780 + +0.3 5,833,780 + -0.5 5,833,780 + +0.0 5,833,781 - +0.4 5,833,782 + +0.3 5,833,783 - -0.5 5,833,783 - -0.2 5,833,788 - -0.4 5,833,800 + -2.4 5,833,858 - +1.2 5,833,898 + Psyr_4920 0.12 -0.8 5,833,899 - Psyr_4920 0.13 -1.3 5,833,949 + Psyr_4920 0.21 -0.6 5,834,419 + +0.2 5,834,419 + -0.1 5,834,419 + +0.1 5,834,419 + -0.7 5,834,419 + +2.2 5,834,419 + +1.2 5,834,419 + -0.8 5,834,419 + +0.7 5,834,419 + -0.1 5,834,420 - +0.6 5,834,420 - -0.6 5,834,420 - -0.6 5,834,420 - -0.2 5,834,420 - -0.1 5,834,420 - +0.4 5,834,420 - +0.1 5,834,420 - +1.6 5,834,420 - +2.0 5,834,420 - +1.2 5,834,420 - -0.6 5,834,420 - +0.7 5,834,476 + Psyr_4921 0.15 +1.3 5,834,476 + Psyr_4921 0.15 +1.3 5,834,476 + Psyr_4921 0.15 +0.5 5,834,476 + Psyr_4921 0.15 -0.5 5,834,476 + Psyr_4921 0.15 -1.0 5,834,477 - Psyr_4921 0.16 -0.0 5,834,477 - Psyr_4921 0.16 -0.1 5,834,477 - Psyr_4921 0.16 -1.1 5,834,477 - Psyr_4921 0.16 -0.2 5,834,477 - Psyr_4921 0.16 -0.7 5,834,477 - Psyr_4921 0.16 -0.7 5,834,477 - Psyr_4921 0.16 +0.6 5,834,483 + Psyr_4921 0.17 -0.3 5,834,483 + Psyr_4921 0.17 +0.5 5,834,484 - Psyr_4921 0.17 +0.0 5,834,514 + Psyr_4921 0.25 +1.2 5,834,515 - Psyr_4921 0.26 -1.0 5,834,515 - Psyr_4921 0.26 -0.3 5,834,574 - Psyr_4921 0.41 -0.8 5,834,574 - Psyr_4921 0.41 +0.7 5,834,634 + Psyr_4921 0.57 -0.7 5,834,634 + Psyr_4921 0.57 -0.7 5,834,635 - Psyr_4921 0.57 -0.0 5,834,635 - Psyr_4921 0.57 +1.4 5,834,769 + +0.3 5,834,770 - -1.7 5,834,770 - +0.6 5,834,770 - +0.7 5,834,857 + +0.8 5,834,857 + +0.3 5,834,858 - -0.1 5,834,858 - -1.2 5,834,878 + +3.7 5,834,930 - -0.6 5,834,930 - -1.4 5,834,989 + +0.4 5,834,989 + -1.6 5,834,989 + +2.4 5,834,989 + -1.7 5,834,989 + -0.3 5,834,989 + -1.0 5,834,989 + -0.7 5,834,989 + -0.3 5,834,990 - -2.2 5,834,990 - -0.1 5,834,990 - -1.1 5,834,990 - +1.2 5,834,990 - +0.5 5,834,990 - -0.4 5,835,036 + -0.5 5,835,036 + -0.6 5,835,036 + -0.7 5,835,036 + +1.3 5,835,037 - -0.6 5,835,037 - -0.2 5,835,106 + +0.3 5,835,118 + -1.1 5,835,118 + -1.3 5,835,118 + +0.3 5,835,166 + +0.4 5,835,166 + +0.7 5,835,167 - +0.7 5,835,167 - -0.3 5,835,167 - -1.5 5,835,167 - -1.3 5,835,173 + -0.7 5,835,173 + +0.5 5,835,174 - -0.1 5,835,255 + -0.0 5,835,255 + +1.2 5,835,255 + -0.8 5,835,255 + +0.4 5,835,256 - +1.0 5,835,256 - +0.3 5,835,294 + -0.1 5,835,295 - -0.4 5,835,295 - +0.2 5,835,366 + +0.4
Or see this region's nucleotide sequence