Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4824 and Psyr_4825 are separated by 112 nucleotides Psyr_4825 and Psyr_4826 are separated by 34 nucleotides
Psyr_4824: Psyr_4824 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,721,697 to 5,722,632
_4824
Psyr_4825: Psyr_4825 - xenobiotic compound monooxygenase, DszA family, A subunit, at 5,722,745 to 5,724,070
_4825
Psyr_4826: Psyr_4826 - TonB-dependent receptor:TonB box, N-terminal, at 5,724,105 to 5,726,372
_4826
Position (kb)
5722
5723
5724
5725 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5721.823 kb on + strand, within Psyr_4824 at 5721.842 kb on + strand, within Psyr_4824 at 5721.843 kb on - strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.887 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.726 kb on + strand at 5722.727 kb on - strand at 5722.753 kb on + strand at 5722.753 kb on + strand at 5722.754 kb on - strand at 5722.754 kb on - strand at 5722.804 kb on - strand at 5722.804 kb on - strand at 5722.832 kb on + strand at 5722.833 kb on - strand at 5723.317 kb on - strand, within Psyr_4825 at 5723.317 kb on - strand, within Psyr_4825 at 5723.518 kb on - strand, within Psyr_4825 at 5723.518 kb on - strand, within Psyr_4825 at 5723.741 kb on + strand, within Psyr_4825 at 5723.742 kb on - strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.791 kb on + strand, within Psyr_4825 at 5723.792 kb on - strand, within Psyr_4825 at 5724.070 kb on + strand at 5724.070 kb on + strand at 5724.070 kb on + strand at 5724.071 kb on - strand at 5724.071 kb on - strand at 5724.082 kb on + strand at 5724.082 kb on + strand at 5724.082 kb on + strand at 5724.136 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.203 kb on - strand at 5724.256 kb on + strand at 5724.257 kb on - strand at 5724.257 kb on - strand at 5724.332 kb on - strand, within Psyr_4826 at 5724.332 kb on - strand, within Psyr_4826 at 5724.355 kb on + strand, within Psyr_4826 at 5724.355 kb on + strand, within Psyr_4826 at 5724.355 kb on + strand, within Psyr_4826 at 5724.403 kb on + strand, within Psyr_4826 at 5724.403 kb on + strand, within Psyr_4826 at 5724.404 kb on - strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.419 kb on - strand, within Psyr_4826 at 5724.419 kb on - strand, within Psyr_4826 at 5724.520 kb on + strand, within Psyr_4826 at 5724.521 kb on - strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.670 kb on + strand, within Psyr_4826 at 5724.670 kb on + strand, within Psyr_4826 at 5724.671 kb on - strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.835 kb on + strand, within Psyr_4826 at 5724.836 kb on - strand, within Psyr_4826 at 5724.836 kb on - strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.985 kb on + strand, within Psyr_4826 at 5724.985 kb on + strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 5,721,823 + Psyr_4824 0.13 +1.2 5,721,842 + Psyr_4824 0.15 +0.8 5,721,843 - Psyr_4824 0.16 +0.1 5,721,886 + Psyr_4824 0.20 +0.5 5,721,886 + Psyr_4824 0.20 +1.6 5,721,887 - Psyr_4824 0.20 -1.5 5,721,895 - Psyr_4824 0.21 +0.6 5,721,895 - Psyr_4824 0.21 +0.1 5,722,001 + Psyr_4824 0.32 -0.9 5,722,001 + Psyr_4824 0.32 +0.6 5,722,001 + Psyr_4824 0.32 +1.0 5,722,001 + Psyr_4824 0.32 +0.6 5,722,002 - Psyr_4824 0.33 -1.0 5,722,002 - Psyr_4824 0.33 -0.1 5,722,002 - Psyr_4824 0.33 +0.1 5,722,002 - Psyr_4824 0.33 -0.1 5,722,076 + Psyr_4824 0.40 -0.4 5,722,076 + Psyr_4824 0.40 +0.1 5,722,076 + Psyr_4824 0.40 +0.7 5,722,076 + Psyr_4824 0.40 +0.0 5,722,076 + Psyr_4824 0.40 +0.7 5,722,076 + Psyr_4824 0.40 +0.5 5,722,077 - Psyr_4824 0.41 +0.1 5,722,077 - Psyr_4824 0.41 +0.1 5,722,077 - Psyr_4824 0.41 +0.5 5,722,079 + Psyr_4824 0.41 -0.4 5,722,079 + Psyr_4824 0.41 +1.4 5,722,079 + Psyr_4824 0.41 +0.5 5,722,079 + Psyr_4824 0.41 +0.1 5,722,080 - Psyr_4824 0.41 +0.3 5,722,080 - Psyr_4824 0.41 -0.4 5,722,152 - Psyr_4824 0.49 -0.3 5,722,152 - Psyr_4824 0.49 +0.6 5,722,165 - Psyr_4824 0.50 +0.1 5,722,165 - Psyr_4824 0.50 +0.2 5,722,212 + Psyr_4824 0.55 -0.7 5,722,212 + Psyr_4824 0.55 +1.1 5,722,212 + Psyr_4824 0.55 +2.1 5,722,212 + Psyr_4824 0.55 +0.1 5,722,213 - Psyr_4824 0.55 +0.0 5,722,213 - Psyr_4824 0.55 +0.1 5,722,213 - Psyr_4824 0.55 +1.7 5,722,337 + Psyr_4824 0.68 +1.0 5,722,337 + Psyr_4824 0.68 +0.6 5,722,337 + Psyr_4824 0.68 -1.4 5,722,338 - Psyr_4824 0.68 -0.8 5,722,338 - Psyr_4824 0.68 -0.9 5,722,338 - Psyr_4824 0.68 -0.5 5,722,726 + -1.3 5,722,727 - +0.4 5,722,753 + +0.4 5,722,753 + -0.8 5,722,754 - -0.5 5,722,754 - +0.0 5,722,804 - +0.9 5,722,804 - -0.6 5,722,832 + +0.1 5,722,833 - -0.5 5,723,317 - Psyr_4825 0.43 -0.4 5,723,317 - Psyr_4825 0.43 +0.3 5,723,518 - Psyr_4825 0.58 -0.3 5,723,518 - Psyr_4825 0.58 -0.0 5,723,741 + Psyr_4825 0.75 +1.7 5,723,742 - Psyr_4825 0.75 +1.1 5,723,760 + Psyr_4825 0.77 +0.5 5,723,760 + Psyr_4825 0.77 -0.9 5,723,760 + Psyr_4825 0.77 -1.2 5,723,760 + Psyr_4825 0.77 +0.5 5,723,760 + Psyr_4825 0.77 +0.2 5,723,760 + Psyr_4825 0.77 +0.1 5,723,761 - Psyr_4825 0.77 +0.5 5,723,761 - Psyr_4825 0.77 -0.2 5,723,761 - Psyr_4825 0.77 -0.6 5,723,761 - Psyr_4825 0.77 +1.6 5,723,761 - Psyr_4825 0.77 +0.3 5,723,761 - Psyr_4825 0.77 +0.0 5,723,761 - Psyr_4825 0.77 +1.9 5,723,761 - Psyr_4825 0.77 +0.9 5,723,761 - Psyr_4825 0.77 -1.0 5,723,791 + Psyr_4825 0.79 +0.9 5,723,792 - Psyr_4825 0.79 +2.1 5,724,070 + +0.6 5,724,070 + -0.1 5,724,070 + -0.1 5,724,071 - -0.7 5,724,071 - -0.6 5,724,082 + -0.1 5,724,082 + +2.3 5,724,082 + +1.4 5,724,136 + -0.7 5,724,172 + -0.4 5,724,172 + +2.7 5,724,172 + +0.9 5,724,172 + -0.1 5,724,172 + +1.7 5,724,172 + +0.6 5,724,172 + -0.3 5,724,172 + +1.0 5,724,173 - +0.1 5,724,173 - -0.6 5,724,173 - -0.3 5,724,173 - +0.7 5,724,173 - -0.7 5,724,173 - -0.4 5,724,203 - +0.7 5,724,256 + +0.3 5,724,257 - +1.1 5,724,257 - -0.9 5,724,332 - Psyr_4826 0.10 +0.5 5,724,332 - Psyr_4826 0.10 -0.2 5,724,355 + Psyr_4826 0.11 -0.1 5,724,355 + Psyr_4826 0.11 -0.7 5,724,355 + Psyr_4826 0.11 +0.2 5,724,403 + Psyr_4826 0.13 +0.4 5,724,403 + Psyr_4826 0.13 -0.2 5,724,404 - Psyr_4826 0.13 -1.7 5,724,418 + Psyr_4826 0.14 +0.1 5,724,418 + Psyr_4826 0.14 -0.8 5,724,418 + Psyr_4826 0.14 +2.1 5,724,418 + Psyr_4826 0.14 +0.4 5,724,419 - Psyr_4826 0.14 -1.2 5,724,419 - Psyr_4826 0.14 +1.1 5,724,520 + Psyr_4826 0.18 +2.0 5,724,521 - Psyr_4826 0.18 -1.6 5,724,661 + Psyr_4826 0.25 -0.5 5,724,661 + Psyr_4826 0.25 -0.3 5,724,661 + Psyr_4826 0.25 +1.1 5,724,661 + Psyr_4826 0.25 +0.8 5,724,661 + Psyr_4826 0.25 +0.7 5,724,662 - Psyr_4826 0.25 -2.4 5,724,662 - Psyr_4826 0.25 -0.9 5,724,662 - Psyr_4826 0.25 -1.1 5,724,662 - Psyr_4826 0.25 +1.0 5,724,662 - Psyr_4826 0.25 +1.0 5,724,662 - Psyr_4826 0.25 +0.0 5,724,670 + Psyr_4826 0.25 +0.1 5,724,670 + Psyr_4826 0.25 +0.1 5,724,671 - Psyr_4826 0.25 +0.4 5,724,808 + Psyr_4826 0.31 -1.4 5,724,808 + Psyr_4826 0.31 +0.8 5,724,808 + Psyr_4826 0.31 +0.7 5,724,808 + Psyr_4826 0.31 -0.4 5,724,835 + Psyr_4826 0.32 -0.5 5,724,836 - Psyr_4826 0.32 -0.4 5,724,836 - Psyr_4826 0.32 +0.1 5,724,844 + Psyr_4826 0.33 -0.4 5,724,844 + Psyr_4826 0.33 -0.2 5,724,844 + Psyr_4826 0.33 -0.2 5,724,844 + Psyr_4826 0.33 -0.3 5,724,844 + Psyr_4826 0.33 +0.1 5,724,844 + Psyr_4826 0.33 +0.3 5,724,844 + Psyr_4826 0.33 +0.1 5,724,844 + Psyr_4826 0.33 +0.6 5,724,844 + Psyr_4826 0.33 -2.6 5,724,844 + Psyr_4826 0.33 +0.5 5,724,845 - Psyr_4826 0.33 +0.1 5,724,845 - Psyr_4826 0.33 -0.1 5,724,845 - Psyr_4826 0.33 -1.4 5,724,845 - Psyr_4826 0.33 -1.5 5,724,845 - Psyr_4826 0.33 +0.1 5,724,845 - Psyr_4826 0.33 -0.3 5,724,845 - Psyr_4826 0.33 -0.1 5,724,845 - Psyr_4826 0.33 -0.7 5,724,845 - Psyr_4826 0.33 +0.3 5,724,845 - Psyr_4826 0.33 +2.1 5,724,845 - Psyr_4826 0.33 +0.9 5,724,845 - Psyr_4826 0.33 -1.0 5,724,845 - Psyr_4826 0.33 +0.1 5,724,845 - Psyr_4826 0.33 +0.6 5,724,845 - Psyr_4826 0.33 +0.1 5,724,845 - Psyr_4826 0.33 -0.4 5,724,845 - Psyr_4826 0.33 -0.1 5,724,845 - Psyr_4826 0.33 -0.1 5,724,985 + Psyr_4826 0.39 -0.0 5,724,985 + Psyr_4826 0.39 -0.4 5,724,986 - Psyr_4826 0.39 -0.1 5,724,986 - Psyr_4826 0.39 +0.1 5,724,986 - Psyr_4826 0.39 -0.5 5,724,986 - Psyr_4826 0.39 -0.8
Or see this region's nucleotide sequence