Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4824

Experiment: KB with Carbenicillin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4823 and Psyr_4824 are separated by 81 nucleotidesPsyr_4824 and Psyr_4825 are separated by 112 nucleotides Psyr_4823: Psyr_4823 - Aldo/keto reductase, at 5,720,578 to 5,721,615 _4823 Psyr_4824: Psyr_4824 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,721,697 to 5,722,632 _4824 Psyr_4825: Psyr_4825 - xenobiotic compound monooxygenase, DszA family, A subunit, at 5,722,745 to 5,724,070 _4825 Position (kb) 5721 5722 5723Strain fitness (log2 ratio) -2 -1 0 1 2at 5720.915 kb on + strand, within Psyr_4823at 5720.915 kb on + strand, within Psyr_4823at 5720.915 kb on + strand, within Psyr_4823at 5720.916 kb on - strand, within Psyr_4823at 5720.916 kb on - strand, within Psyr_4823at 5720.916 kb on - strand, within Psyr_4823at 5720.916 kb on - strand, within Psyr_4823at 5720.916 kb on - strand, within Psyr_4823at 5720.949 kb on + strand, within Psyr_4823at 5720.982 kb on + strand, within Psyr_4823at 5721.026 kb on + strand, within Psyr_4823at 5721.026 kb on + strand, within Psyr_4823at 5721.027 kb on - strand, within Psyr_4823at 5721.027 kb on - strand, within Psyr_4823at 5721.114 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.122 kb on + strand, within Psyr_4823at 5721.123 kb on - strand, within Psyr_4823at 5721.123 kb on - strand, within Psyr_4823at 5721.123 kb on - strand, within Psyr_4823at 5721.206 kb on + strand, within Psyr_4823at 5721.206 kb on + strand, within Psyr_4823at 5721.206 kb on + strand, within Psyr_4823at 5721.206 kb on + strand, within Psyr_4823at 5721.207 kb on - strand, within Psyr_4823at 5721.207 kb on - strand, within Psyr_4823at 5721.221 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.269 kb on + strand, within Psyr_4823at 5721.270 kb on - strand, within Psyr_4823at 5721.270 kb on - strand, within Psyr_4823at 5721.270 kb on - strand, within Psyr_4823at 5721.270 kb on - strand, within Psyr_4823at 5721.273 kb on + strand, within Psyr_4823at 5721.273 kb on + strand, within Psyr_4823at 5721.273 kb on + strand, within Psyr_4823at 5721.274 kb on - strand, within Psyr_4823at 5721.274 kb on - strand, within Psyr_4823at 5721.274 kb on - strand, within Psyr_4823at 5721.274 kb on - strand, within Psyr_4823at 5721.274 kb on - strand, within Psyr_4823at 5721.419 kb on + strand, within Psyr_4823at 5721.419 kb on + strand, within Psyr_4823at 5721.419 kb on + strand, within Psyr_4823at 5721.420 kb on - strand, within Psyr_4823at 5721.572 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.608 kb on + strandat 5721.609 kb on - strandat 5721.609 kb on - strandat 5721.609 kb on - strandat 5721.609 kb on - strandat 5721.823 kb on + strand, within Psyr_4824at 5721.842 kb on + strand, within Psyr_4824at 5721.843 kb on - strand, within Psyr_4824at 5721.886 kb on + strand, within Psyr_4824at 5721.886 kb on + strand, within Psyr_4824at 5721.887 kb on - strand, within Psyr_4824at 5721.895 kb on - strand, within Psyr_4824at 5721.895 kb on - strand, within Psyr_4824at 5722.001 kb on + strand, within Psyr_4824at 5722.001 kb on + strand, within Psyr_4824at 5722.001 kb on + strand, within Psyr_4824at 5722.001 kb on + strand, within Psyr_4824at 5722.002 kb on - strand, within Psyr_4824at 5722.002 kb on - strand, within Psyr_4824at 5722.002 kb on - strand, within Psyr_4824at 5722.002 kb on - strand, within Psyr_4824at 5722.076 kb on + strand, within Psyr_4824at 5722.076 kb on + strand, within Psyr_4824at 5722.076 kb on + strand, within Psyr_4824at 5722.076 kb on + strand, within Psyr_4824at 5722.076 kb on + strand, within Psyr_4824at 5722.076 kb on + strand, within Psyr_4824at 5722.077 kb on - strand, within Psyr_4824at 5722.077 kb on - strand, within Psyr_4824at 5722.077 kb on - strand, within Psyr_4824at 5722.079 kb on + strand, within Psyr_4824at 5722.079 kb on + strand, within Psyr_4824at 5722.079 kb on + strand, within Psyr_4824at 5722.079 kb on + strand, within Psyr_4824at 5722.080 kb on - strand, within Psyr_4824at 5722.080 kb on - strand, within Psyr_4824at 5722.152 kb on - strand, within Psyr_4824at 5722.152 kb on - strand, within Psyr_4824at 5722.165 kb on - strand, within Psyr_4824at 5722.165 kb on - strand, within Psyr_4824at 5722.212 kb on + strand, within Psyr_4824at 5722.212 kb on + strand, within Psyr_4824at 5722.212 kb on + strand, within Psyr_4824at 5722.212 kb on + strand, within Psyr_4824at 5722.213 kb on - strand, within Psyr_4824at 5722.213 kb on - strand, within Psyr_4824at 5722.213 kb on - strand, within Psyr_4824at 5722.337 kb on + strand, within Psyr_4824at 5722.337 kb on + strand, within Psyr_4824at 5722.337 kb on + strand, within Psyr_4824at 5722.338 kb on - strand, within Psyr_4824at 5722.338 kb on - strand, within Psyr_4824at 5722.338 kb on - strand, within Psyr_4824at 5722.726 kb on + strandat 5722.727 kb on - strandat 5722.753 kb on + strandat 5722.753 kb on + strandat 5722.754 kb on - strandat 5722.754 kb on - strandat 5722.804 kb on - strandat 5722.804 kb on - strandat 5722.832 kb on + strandat 5722.833 kb on - strandat 5723.317 kb on - strand, within Psyr_4825at 5723.317 kb on - strand, within Psyr_4825at 5723.518 kb on - strand, within Psyr_4825at 5723.518 kb on - strand, within Psyr_4825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
remove
5,720,915 + Psyr_4823 0.32 -0.2
5,720,915 + Psyr_4823 0.32 +0.5
5,720,915 + Psyr_4823 0.32 +0.7
5,720,916 - Psyr_4823 0.33 +0.3
5,720,916 - Psyr_4823 0.33 -1.2
5,720,916 - Psyr_4823 0.33 -0.7
5,720,916 - Psyr_4823 0.33 +1.3
5,720,916 - Psyr_4823 0.33 +1.3
5,720,949 + Psyr_4823 0.36 -1.3
5,720,982 + Psyr_4823 0.39 -0.4
5,721,026 + Psyr_4823 0.43 +1.6
5,721,026 + Psyr_4823 0.43 -0.7
5,721,027 - Psyr_4823 0.43 -1.1
5,721,027 - Psyr_4823 0.43 +0.9
5,721,114 + Psyr_4823 0.52 -0.8
5,721,122 + Psyr_4823 0.52 +1.4
5,721,122 + Psyr_4823 0.52 +0.1
5,721,122 + Psyr_4823 0.52 -0.7
5,721,122 + Psyr_4823 0.52 +0.4
5,721,122 + Psyr_4823 0.52 +0.1
5,721,122 + Psyr_4823 0.52 -1.1
5,721,122 + Psyr_4823 0.52 +0.8
5,721,122 + Psyr_4823 0.52 +0.1
5,721,122 + Psyr_4823 0.52 -0.4
5,721,122 + Psyr_4823 0.52 -0.9
5,721,122 + Psyr_4823 0.52 -0.4
5,721,122 + Psyr_4823 0.52 -0.4
5,721,123 - Psyr_4823 0.53 -1.3
5,721,123 - Psyr_4823 0.53 +1.3
5,721,123 - Psyr_4823 0.53 -0.4
5,721,206 + Psyr_4823 0.61 -0.6
5,721,206 + Psyr_4823 0.61 +0.1
5,721,206 + Psyr_4823 0.61 +0.3
5,721,206 + Psyr_4823 0.61 -0.1
5,721,207 - Psyr_4823 0.61 +0.2
5,721,207 - Psyr_4823 0.61 -2.4
5,721,221 + Psyr_4823 0.62 -0.5
5,721,269 + Psyr_4823 0.67 -0.3
5,721,269 + Psyr_4823 0.67 -0.4
5,721,269 + Psyr_4823 0.67 -0.0
5,721,269 + Psyr_4823 0.67 +0.1
5,721,269 + Psyr_4823 0.67 +0.5
5,721,269 + Psyr_4823 0.67 -1.1
5,721,269 + Psyr_4823 0.67 +1.5
5,721,269 + Psyr_4823 0.67 +1.0
5,721,269 + Psyr_4823 0.67 -0.5
5,721,269 + Psyr_4823 0.67 +0.3
5,721,269 + Psyr_4823 0.67 +0.7
5,721,270 - Psyr_4823 0.67 +0.5
5,721,270 - Psyr_4823 0.67 -0.5
5,721,270 - Psyr_4823 0.67 -1.6
5,721,270 - Psyr_4823 0.67 +0.7
5,721,273 + Psyr_4823 0.67 +0.1
5,721,273 + Psyr_4823 0.67 -0.5
5,721,273 + Psyr_4823 0.67 +0.1
5,721,274 - Psyr_4823 0.67 -0.1
5,721,274 - Psyr_4823 0.67 -1.0
5,721,274 - Psyr_4823 0.67 -0.1
5,721,274 - Psyr_4823 0.67 -1.4
5,721,274 - Psyr_4823 0.67 +0.3
5,721,419 + Psyr_4823 0.81 -0.2
5,721,419 + Psyr_4823 0.81 +0.1
5,721,419 + Psyr_4823 0.81 +0.1
5,721,420 - Psyr_4823 0.81 +0.3
5,721,572 + +0.6
5,721,608 + +0.4
5,721,608 + -0.9
5,721,608 + +1.2
5,721,608 + -0.6
5,721,608 + +2.1
5,721,608 + -1.0
5,721,608 + +0.1
5,721,608 + +0.3
5,721,608 + -2.2
5,721,608 + -0.7
5,721,608 + +1.1
5,721,608 + +0.0
5,721,608 + -1.0
5,721,609 - -0.7
5,721,609 - +0.9
5,721,609 - -0.4
5,721,609 - -1.2
5,721,823 + Psyr_4824 0.13 +1.2
5,721,842 + Psyr_4824 0.15 +0.8
5,721,843 - Psyr_4824 0.16 +0.1
5,721,886 + Psyr_4824 0.20 +0.5
5,721,886 + Psyr_4824 0.20 +1.6
5,721,887 - Psyr_4824 0.20 -1.5
5,721,895 - Psyr_4824 0.21 +0.6
5,721,895 - Psyr_4824 0.21 +0.1
5,722,001 + Psyr_4824 0.32 -0.9
5,722,001 + Psyr_4824 0.32 +0.6
5,722,001 + Psyr_4824 0.32 +1.0
5,722,001 + Psyr_4824 0.32 +0.6
5,722,002 - Psyr_4824 0.33 -1.0
5,722,002 - Psyr_4824 0.33 -0.1
5,722,002 - Psyr_4824 0.33 +0.1
5,722,002 - Psyr_4824 0.33 -0.1
5,722,076 + Psyr_4824 0.40 -0.4
5,722,076 + Psyr_4824 0.40 +0.1
5,722,076 + Psyr_4824 0.40 +0.7
5,722,076 + Psyr_4824 0.40 +0.0
5,722,076 + Psyr_4824 0.40 +0.7
5,722,076 + Psyr_4824 0.40 +0.5
5,722,077 - Psyr_4824 0.41 +0.1
5,722,077 - Psyr_4824 0.41 +0.1
5,722,077 - Psyr_4824 0.41 +0.5
5,722,079 + Psyr_4824 0.41 -0.4
5,722,079 + Psyr_4824 0.41 +1.4
5,722,079 + Psyr_4824 0.41 +0.5
5,722,079 + Psyr_4824 0.41 +0.1
5,722,080 - Psyr_4824 0.41 +0.3
5,722,080 - Psyr_4824 0.41 -0.4
5,722,152 - Psyr_4824 0.49 -0.3
5,722,152 - Psyr_4824 0.49 +0.6
5,722,165 - Psyr_4824 0.50 +0.1
5,722,165 - Psyr_4824 0.50 +0.2
5,722,212 + Psyr_4824 0.55 -0.7
5,722,212 + Psyr_4824 0.55 +1.1
5,722,212 + Psyr_4824 0.55 +2.1
5,722,212 + Psyr_4824 0.55 +0.1
5,722,213 - Psyr_4824 0.55 +0.0
5,722,213 - Psyr_4824 0.55 +0.1
5,722,213 - Psyr_4824 0.55 +1.7
5,722,337 + Psyr_4824 0.68 +1.0
5,722,337 + Psyr_4824 0.68 +0.6
5,722,337 + Psyr_4824 0.68 -1.4
5,722,338 - Psyr_4824 0.68 -0.8
5,722,338 - Psyr_4824 0.68 -0.9
5,722,338 - Psyr_4824 0.68 -0.5
5,722,726 + -1.3
5,722,727 - +0.4
5,722,753 + +0.4
5,722,753 + -0.8
5,722,754 - -0.5
5,722,754 - +0.0
5,722,804 - +0.9
5,722,804 - -0.6
5,722,832 + +0.1
5,722,833 - -0.5
5,723,317 - Psyr_4825 0.43 -0.4
5,723,317 - Psyr_4825 0.43 +0.3
5,723,518 - Psyr_4825 0.58 -0.3
5,723,518 - Psyr_4825 0.58 -0.0

Or see this region's nucleotide sequence