Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4724 and Psyr_4725 are separated by 163 nucleotides Psyr_4725 and Psyr_4726 are separated by 190 nucleotides
Psyr_4724: Psyr_4724 - Phospholipid/glycerol acyltransferase, at 5,602,632 to 5,603,555
_4724
Psyr_4725: Psyr_4725 - Protein of unknown function DUF785, at 5,603,719 to 5,604,222
_4725
Psyr_4726: Psyr_4726 - hypothetical protein, at 5,604,413 to 5,605,573
_4726
Position (kb) 5603
5604
5605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5602.725 kb on + strand, within Psyr_4724 at 5602.726 kb on - strand, within Psyr_4724 at 5602.726 kb on - strand, within Psyr_4724 at 5602.852 kb on + strand, within Psyr_4724 at 5603.003 kb on - strand, within Psyr_4724 at 5603.275 kb on + strand, within Psyr_4724 at 5603.275 kb on + strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.475 kb on - strand at 5603.475 kb on - strand at 5603.475 kb on - strand at 5603.485 kb on - strand at 5603.556 kb on + strand at 5603.556 kb on + strand at 5603.557 kb on - strand at 5603.560 kb on - strand at 5603.560 kb on - strand at 5603.585 kb on + strand at 5603.585 kb on + strand at 5603.586 kb on - strand at 5603.586 kb on - strand at 5603.586 kb on - strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.594 kb on - strand at 5603.594 kb on - strand at 5603.594 kb on - strand at 5603.594 kb on - strand at 5603.597 kb on + strand at 5603.598 kb on - strand at 5603.622 kb on + strand at 5603.623 kb on - strand at 5603.639 kb on + strand at 5603.639 kb on + strand at 5603.639 kb on + strand at 5603.639 kb on + strand at 5603.640 kb on - strand at 5603.640 kb on - strand at 5603.640 kb on - strand at 5603.640 kb on - strand at 5603.653 kb on + strand at 5603.671 kb on + strand at 5603.671 kb on + strand at 5603.700 kb on - strand at 5603.738 kb on + strand at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.919 kb on - strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5604.091 kb on - strand, within Psyr_4725 at 5604.091 kb on - strand, within Psyr_4725 at 5604.091 kb on - strand, within Psyr_4725 at 5604.197 kb on - strand at 5604.198 kb on + strand at 5604.199 kb on - strand at 5604.232 kb on + strand at 5604.232 kb on + strand at 5605.137 kb on + strand, within Psyr_4726
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 5,602,725 + Psyr_4724 0.10 -0.4 5,602,726 - Psyr_4724 0.10 -0.0 5,602,726 - Psyr_4724 0.10 +1.3 5,602,852 + Psyr_4724 0.24 -1.0 5,603,003 - Psyr_4724 0.40 +0.6 5,603,275 + Psyr_4724 0.70 -0.7 5,603,275 + Psyr_4724 0.70 -1.1 5,603,276 - Psyr_4724 0.70 -1.0 5,603,276 - Psyr_4724 0.70 -0.4 5,603,276 - Psyr_4724 0.70 -1.2 5,603,276 - Psyr_4724 0.70 +0.2 5,603,475 - -0.3 5,603,475 - +0.9 5,603,475 - -1.7 5,603,485 - -0.2 5,603,556 + +1.4 5,603,556 + -0.4 5,603,557 - +0.2 5,603,560 - -0.1 5,603,560 - -0.5 5,603,585 + -0.2 5,603,585 + +0.2 5,603,586 - -0.7 5,603,586 - +1.1 5,603,586 - +1.0 5,603,593 + -2.1 5,603,593 + +0.9 5,603,593 + -0.9 5,603,593 + +1.1 5,603,593 + -0.2 5,603,593 + -0.1 5,603,594 - +0.1 5,603,594 - +0.1 5,603,594 - -0.0 5,603,594 - +0.3 5,603,597 + -1.1 5,603,598 - +0.3 5,603,622 + +0.9 5,603,623 - -1.1 5,603,639 + +0.4 5,603,639 + +2.7 5,603,639 + -0.5 5,603,639 + +0.4 5,603,640 - -1.2 5,603,640 - -0.4 5,603,640 - -1.1 5,603,640 - +0.5 5,603,653 + -0.5 5,603,671 + -0.6 5,603,671 + +0.3 5,603,700 - +0.3 5,603,738 + -0.4 5,603,785 + Psyr_4725 0.13 +0.9 5,603,785 + Psyr_4725 0.13 -0.1 5,603,785 + Psyr_4725 0.13 +0.5 5,603,785 + Psyr_4725 0.13 -0.5 5,603,785 + Psyr_4725 0.13 +0.8 5,603,785 + Psyr_4725 0.13 -0.5 5,603,785 + Psyr_4725 0.13 +0.0 5,603,786 - Psyr_4725 0.13 -0.7 5,603,786 - Psyr_4725 0.13 -1.2 5,603,786 - Psyr_4725 0.13 -0.2 5,603,786 - Psyr_4725 0.13 -0.2 5,603,786 - Psyr_4725 0.13 -0.7 5,603,919 - Psyr_4725 0.40 -1.6 5,603,959 + Psyr_4725 0.48 +1.8 5,603,959 + Psyr_4725 0.48 -0.4 5,603,959 + Psyr_4725 0.48 -0.7 5,603,959 + Psyr_4725 0.48 +0.8 5,603,959 + Psyr_4725 0.48 -1.1 5,603,960 - Psyr_4725 0.48 +1.0 5,603,960 - Psyr_4725 0.48 -1.4 5,603,960 - Psyr_4725 0.48 -0.2 5,603,960 - Psyr_4725 0.48 -0.1 5,603,960 - Psyr_4725 0.48 -1.2 5,603,960 - Psyr_4725 0.48 -0.4 5,604,091 - Psyr_4725 0.74 -0.7 5,604,091 - Psyr_4725 0.74 +0.9 5,604,091 - Psyr_4725 0.74 -1.9 5,604,197 - +0.1 5,604,198 + +0.1 5,604,199 - +1.3 5,604,232 + +1.4 5,604,232 + -0.5 5,605,137 + Psyr_4726 0.62 +0.1
Or see this region's nucleotide sequence