Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4359

Experiment: KB with Carbenicillin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4358 and Psyr_4359 overlap by 8 nucleotidesPsyr_4359 and Psyr_4360 overlap by 1 nucleotidesPsyr_4360 and Psyr_4361 are separated by 90 nucleotides Psyr_4358: Psyr_4358 - Lipoate synthase, at 5,211,943 to 5,212,950 _4358 Psyr_4359: Psyr_4359 - Lipoate-protein ligase B, at 5,212,943 to 5,213,599 _4359 Psyr_4360: Psyr_4360 - Protein of unknown function DUF493, at 5,213,599 to 5,213,874 _4360 Psyr_4361: Psyr_4361 - penicillin-binding protein 6, Serine peptidase, MEROPS family S11, at 5,213,965 to 5,215,152 _4361 Position (kb) 5212 5213 5214Strain fitness (log2 ratio) -2 -1 0 1at 5213.881 kb on - strandat 5213.982 kb on - strandat 5214.282 kb on - strand, within Psyr_4361at 5214.315 kb on - strand, within Psyr_4361at 5214.401 kb on - strand, within Psyr_4361at 5214.401 kb on - strand, within Psyr_4361at 5214.536 kb on + strand, within Psyr_4361at 5214.537 kb on - strand, within Psyr_4361at 5214.546 kb on - strand, within Psyr_4361

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
remove
5,213,881 - -0.4
5,213,982 - -0.0
5,214,282 - Psyr_4361 0.27 -0.6
5,214,315 - Psyr_4361 0.29 -1.0
5,214,401 - Psyr_4361 0.37 -1.5
5,214,401 - Psyr_4361 0.37 -1.9
5,214,536 + Psyr_4361 0.48 -0.4
5,214,537 - Psyr_4361 0.48 -1.8
5,214,546 - Psyr_4361 0.49 -1.6

Or see this region's nucleotide sequence