Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4222 and Psyr_4223 are separated by 220 nucleotides Psyr_4223 and Psyr_4224 are separated by 636 nucleotides
Psyr_4222: Psyr_4222 - Protein of unknown function DUF81, at 5,028,997 to 5,029,782
_4222
Psyr_4223: Psyr_4223 - conserved hypothetical protein, at 5,030,003 to 5,030,203
_4223
Psyr_4224: Psyr_4224 - conserved hypothetical protein, at 5,030,840 to 5,031,079
_4224
Position (kb) 5030
5031 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5029.037 kb on + strand at 5029.056 kb on + strand at 5029.094 kb on + strand, within Psyr_4222 at 5029.147 kb on + strand, within Psyr_4222 at 5029.147 kb on + strand, within Psyr_4222 at 5029.147 kb on + strand, within Psyr_4222 at 5029.408 kb on + strand, within Psyr_4222 at 5029.593 kb on + strand, within Psyr_4222 at 5029.594 kb on - strand, within Psyr_4222 at 5029.684 kb on + strand, within Psyr_4222 at 5029.684 kb on + strand, within Psyr_4222 at 5029.684 kb on + strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.699 kb on - strand, within Psyr_4222 at 5029.746 kb on + strand at 5029.746 kb on + strand at 5029.976 kb on + strand at 5029.976 kb on + strand at 5029.976 kb on + strand at 5029.977 kb on - strand at 5029.977 kb on - strand at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.031 kb on - strand, within Psyr_4223 at 5030.031 kb on - strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.052 kb on + strand, within Psyr_4223 at 5030.052 kb on + strand, within Psyr_4223 at 5030.185 kb on - strand at 5030.202 kb on - strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.288 kb on - strand at 5030.362 kb on - strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.510 kb on - strand at 5030.624 kb on - strand at 5030.649 kb on + strand at 5030.649 kb on + strand at 5030.649 kb on + strand at 5030.650 kb on - strand at 5030.650 kb on - strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.789 kb on + strand at 5030.789 kb on + strand at 5030.789 kb on + strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.802 kb on - strand at 5030.802 kb on - strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.993 kb on - strand, within Psyr_4224 at 5030.999 kb on + strand, within Psyr_4224 at 5030.999 kb on + strand, within Psyr_4224 at 5031.131 kb on + strand at 5031.132 kb on - strand at 5031.153 kb on + strand at 5031.167 kb on + strand at 5031.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 5,029,037 + +0.2 5,029,056 + -1.4 5,029,094 + Psyr_4222 0.12 +0.7 5,029,147 + Psyr_4222 0.19 -1.1 5,029,147 + Psyr_4222 0.19 +0.7 5,029,147 + Psyr_4222 0.19 +0.5 5,029,408 + Psyr_4222 0.52 -1.2 5,029,593 + Psyr_4222 0.76 +2.3 5,029,594 - Psyr_4222 0.76 +1.1 5,029,684 + Psyr_4222 0.87 -0.2 5,029,684 + Psyr_4222 0.87 +0.3 5,029,684 + Psyr_4222 0.87 -0.2 5,029,685 - Psyr_4222 0.88 +1.6 5,029,685 - Psyr_4222 0.88 -2.6 5,029,685 - Psyr_4222 0.88 +1.0 5,029,685 - Psyr_4222 0.88 -2.0 5,029,699 - Psyr_4222 0.89 -0.6 5,029,746 + -0.0 5,029,746 + +0.3 5,029,976 + +0.1 5,029,976 + -1.4 5,029,976 + +0.8 5,029,977 - +1.6 5,029,977 - -0.5 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 +1.0 5,030,028 + Psyr_4223 0.12 +2.1 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 -1.6 5,030,028 + Psyr_4223 0.12 +1.7 5,030,028 + Psyr_4223 0.12 +1.2 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 -0.5 5,030,028 + Psyr_4223 0.12 +1.0 5,030,028 + Psyr_4223 0.12 -0.4 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 +0.5 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 +0.8 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 -3.0 5,030,028 + Psyr_4223 0.12 -0.4 5,030,028 + Psyr_4223 0.12 +2.0 5,030,028 + Psyr_4223 0.12 -0.5 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 +0.5 5,030,028 + Psyr_4223 0.12 -0.8 5,030,028 + Psyr_4223 0.12 +0.8 5,030,028 + Psyr_4223 0.12 +0.3 5,030,028 + Psyr_4223 0.12 +1.5 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 +0.9 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 +0.1 5,030,029 - Psyr_4223 0.13 -1.0 5,030,029 - Psyr_4223 0.13 +0.1 5,030,029 - Psyr_4223 0.13 +0.6 5,030,029 - Psyr_4223 0.13 -1.0 5,030,029 - Psyr_4223 0.13 -1.3 5,030,029 - Psyr_4223 0.13 -1.1 5,030,029 - Psyr_4223 0.13 +0.7 5,030,029 - Psyr_4223 0.13 -1.8 5,030,029 - Psyr_4223 0.13 +0.4 5,030,029 - Psyr_4223 0.13 +1.0 5,030,029 - Psyr_4223 0.13 +1.6 5,030,029 - Psyr_4223 0.13 +0.1 5,030,029 - Psyr_4223 0.13 +1.0 5,030,029 - Psyr_4223 0.13 -0.7 5,030,029 - Psyr_4223 0.13 +0.9 5,030,029 - Psyr_4223 0.13 -0.1 5,030,029 - Psyr_4223 0.13 -1.0 5,030,029 - Psyr_4223 0.13 -0.3 5,030,029 - Psyr_4223 0.13 -2.0 5,030,029 - Psyr_4223 0.13 -0.3 5,030,029 - Psyr_4223 0.13 +0.7 5,030,029 - Psyr_4223 0.13 +0.6 5,030,030 + Psyr_4223 0.13 -0.1 5,030,030 + Psyr_4223 0.13 +0.2 5,030,031 - Psyr_4223 0.14 +1.0 5,030,031 - Psyr_4223 0.14 +0.9 5,030,049 + Psyr_4223 0.23 +0.8 5,030,049 + Psyr_4223 0.23 +0.7 5,030,050 - Psyr_4223 0.23 -1.0 5,030,050 - Psyr_4223 0.23 +0.3 5,030,050 - Psyr_4223 0.23 +0.4 5,030,050 - Psyr_4223 0.23 +0.7 5,030,050 - Psyr_4223 0.23 -0.9 5,030,050 - Psyr_4223 0.23 -0.3 5,030,050 - Psyr_4223 0.23 +0.6 5,030,050 - Psyr_4223 0.23 -0.1 5,030,050 - Psyr_4223 0.23 -0.0 5,030,050 - Psyr_4223 0.23 -0.3 5,030,052 + Psyr_4223 0.24 +0.2 5,030,052 + Psyr_4223 0.24 +0.0 5,030,185 - +0.7 5,030,202 - +1.0 5,030,287 + +2.1 5,030,287 + -0.6 5,030,287 + -0.4 5,030,287 + +0.1 5,030,288 - -0.2 5,030,362 - +0.2 5,030,509 + -0.0 5,030,509 + +0.4 5,030,509 + +0.3 5,030,509 + +0.5 5,030,509 + +2.1 5,030,509 + -0.0 5,030,509 + +0.4 5,030,510 - -1.3 5,030,624 - -0.3 5,030,649 + -0.6 5,030,649 + +0.4 5,030,649 + -0.2 5,030,650 - -1.3 5,030,650 - -0.0 5,030,687 + -1.6 5,030,687 + -0.5 5,030,687 + -0.8 5,030,687 + +1.2 5,030,687 + -0.0 5,030,687 + +0.9 5,030,687 + +0.9 5,030,687 + +1.7 5,030,687 + +1.7 5,030,688 - +0.0 5,030,688 - -0.3 5,030,688 - -0.2 5,030,688 - +1.7 5,030,688 - -1.0 5,030,688 - -1.0 5,030,688 - -0.6 5,030,688 - +0.4 5,030,688 - +0.1 5,030,688 - -0.9 5,030,789 + -0.2 5,030,789 + +0.9 5,030,789 + +3.0 5,030,790 - -0.8 5,030,790 - +1.0 5,030,790 - -0.5 5,030,790 - +0.5 5,030,802 - -0.9 5,030,802 - +1.5 5,030,844 + -0.0 5,030,844 + -1.3 5,030,844 + +0.1 5,030,844 + +0.3 5,030,844 + -1.8 5,030,844 + +2.0 5,030,844 + -0.4 5,030,844 + +0.1 5,030,845 - +0.3 5,030,845 - +1.5 5,030,845 - +0.2 5,030,845 - +0.7 5,030,993 - Psyr_4224 0.64 +1.0 5,030,999 + Psyr_4224 0.66 -0.5 5,030,999 + Psyr_4224 0.66 -0.1 5,031,131 + -0.8 5,031,132 - +0.3 5,031,153 + -0.3 5,031,167 + +0.5 5,031,167 + -0.2
Or see this region's nucleotide sequence