Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3869

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3866 and Psyr_3867 are separated by 9 nucleotidesPsyr_3867 and Psyr_3868 are separated by 190 nucleotidesPsyr_3868 and Psyr_3869 are separated by 128 nucleotidesPsyr_3869 and Psyr_3870 are separated by 158 nucleotidesPsyr_3870 and Psyr_3871 are separated by 232 nucleotides Psyr_3866: Psyr_3866 - conserved hypothetical protein, at 4,606,530 to 4,607,021 _3866 Psyr_3867: Psyr_3867 - hypothetical protein, at 4,607,031 to 4,607,360 _3867 Psyr_3868: Psyr_3868 - conserved hypothetical protein, at 4,607,551 to 4,607,799 _3868 Psyr_3869: Psyr_3869 - phage repressor protein, Serine peptidase, MEROPS family S24, at 4,607,928 to 4,608,584 _3869 Psyr_3870: Psyr_3870 - SEC-C motif protein, at 4,608,743 to 4,608,943 _3870 Psyr_3871: Psyr_3871 - Penicillin amidase, at 4,609,176 to 4,611,650 _3871 Position (kb) 4607 4608 4609Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4607.027 kb on - strandat 4607.027 kb on - strandat 4607.027 kb on - strandat 4607.027 kb on - strandat 4607.276 kb on + strand, within Psyr_3867at 4607.277 kb on - strand, within Psyr_3867at 4607.317 kb on - strand, within Psyr_3867at 4607.354 kb on + strandat 4607.354 kb on + strandat 4607.384 kb on + strandat 4607.384 kb on + strandat 4607.384 kb on + strandat 4607.384 kb on + strandat 4607.565 kb on - strandat 4607.565 kb on - strandat 4607.784 kb on + strandat 4607.784 kb on + strandat 4607.846 kb on + strandat 4607.846 kb on + strandat 4607.846 kb on + strandat 4607.847 kb on - strandat 4607.847 kb on - strandat 4607.929 kb on + strandat 4607.929 kb on + strandat 4607.929 kb on + strandat 4607.998 kb on + strand, within Psyr_3869at 4608.223 kb on + strand, within Psyr_3869at 4608.223 kb on + strand, within Psyr_3869at 4608.223 kb on + strand, within Psyr_3869at 4608.224 kb on - strand, within Psyr_3869at 4608.238 kb on + strand, within Psyr_3869at 4608.262 kb on + strand, within Psyr_3869at 4608.566 kb on + strandat 4608.567 kb on - strandat 4608.567 kb on - strandat 4608.702 kb on - strandat 4608.708 kb on + strandat 4608.709 kb on - strandat 4608.724 kb on + strandat 4608.724 kb on + strandat 4608.724 kb on + strandat 4608.725 kb on - strandat 4608.735 kb on + strandat 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.819 kb on + strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.820 kb on - strand, within Psyr_3870at 4608.862 kb on + strand, within Psyr_3870at 4608.862 kb on + strand, within Psyr_3870at 4608.862 kb on + strand, within Psyr_3870at 4608.863 kb on - strand, within Psyr_3870at 4608.865 kb on + strand, within Psyr_3870at 4609.019 kb on + strandat 4609.019 kb on + strandat 4609.019 kb on + strandat 4609.019 kb on + strandat 4609.019 kb on + strandat 4609.019 kb on + strandat 4609.019 kb on + strandat 4609.020 kb on - strandat 4609.020 kb on - strandat 4609.020 kb on - strandat 4609.093 kb on - strandat 4609.093 kb on - strandat 4609.093 kb on - strandat 4609.138 kb on + strandat 4609.138 kb on + strandat 4609.150 kb on + strandat 4609.150 kb on + strandat 4609.150 kb on + strandat 4609.150 kb on + strandat 4609.150 kb on + strandat 4609.151 kb on - strandat 4609.151 kb on - strandat 4609.372 kb on + strandat 4609.373 kb on - strandat 4609.386 kb on + strandat 4609.386 kb on + strandat 4609.387 kb on - strandat 4609.387 kb on - strandat 4609.413 kb on + strandat 4609.560 kb on + strand, within Psyr_3871at 4609.560 kb on + strand, within Psyr_3871at 4609.560 kb on + strand, within Psyr_3871at 4609.560 kb on + strand, within Psyr_3871at 4609.561 kb on - strand, within Psyr_3871at 4609.561 kb on - strand, within Psyr_3871at 4609.561 kb on - strand, within Psyr_3871

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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4,607,027 - +0.5
4,607,027 - +1.4
4,607,027 - +0.2
4,607,027 - +1.2
4,607,276 + Psyr_3867 0.74 -0.3
4,607,277 - Psyr_3867 0.75 +0.6
4,607,317 - Psyr_3867 0.87 -0.2
4,607,354 + -0.4
4,607,354 + -0.8
4,607,384 + -0.3
4,607,384 + +0.5
4,607,384 + +0.1
4,607,384 + -0.3
4,607,565 - +0.2
4,607,565 - -1.8
4,607,784 + +0.0
4,607,784 + +0.8
4,607,846 + -1.2
4,607,846 + +1.3
4,607,846 + -0.4
4,607,847 - +1.4
4,607,847 - +0.0
4,607,929 + +1.2
4,607,929 + -1.5
4,607,929 + +0.8
4,607,998 + Psyr_3869 0.11 -2.2
4,608,223 + Psyr_3869 0.45 +0.8
4,608,223 + Psyr_3869 0.45 +0.2
4,608,223 + Psyr_3869 0.45 -1.2
4,608,224 - Psyr_3869 0.45 +0.8
4,608,238 + Psyr_3869 0.47 +1.1
4,608,262 + Psyr_3869 0.51 +0.8
4,608,566 + +0.8
4,608,567 - -1.0
4,608,567 - +0.3
4,608,702 - +0.1
4,608,708 + +0.7
4,608,709 - +0.3
4,608,724 + -0.0
4,608,724 + -0.2
4,608,724 + +1.3
4,608,725 - -0.1
4,608,735 + +0.1
4,608,819 + Psyr_3870 0.38 -0.6
4,608,819 + Psyr_3870 0.38 -0.2
4,608,819 + Psyr_3870 0.38 +0.1
4,608,819 + Psyr_3870 0.38 +0.1
4,608,819 + Psyr_3870 0.38 +0.8
4,608,819 + Psyr_3870 0.38 +0.2
4,608,819 + Psyr_3870 0.38 +1.1
4,608,819 + Psyr_3870 0.38 +1.8
4,608,819 + Psyr_3870 0.38 -1.5
4,608,820 - Psyr_3870 0.38 -0.4
4,608,820 - Psyr_3870 0.38 +0.8
4,608,820 - Psyr_3870 0.38 -0.2
4,608,820 - Psyr_3870 0.38 +0.1
4,608,820 - Psyr_3870 0.38 -1.0
4,608,820 - Psyr_3870 0.38 -1.2
4,608,820 - Psyr_3870 0.38 +0.8
4,608,820 - Psyr_3870 0.38 +0.8
4,608,820 - Psyr_3870 0.38 -0.2
4,608,820 - Psyr_3870 0.38 -0.3
4,608,820 - Psyr_3870 0.38 +0.8
4,608,862 + Psyr_3870 0.59 +0.1
4,608,862 + Psyr_3870 0.59 -0.2
4,608,862 + Psyr_3870 0.59 +0.3
4,608,863 - Psyr_3870 0.60 -0.4
4,608,865 + Psyr_3870 0.61 -0.2
4,609,019 + -0.3
4,609,019 + +3.4
4,609,019 + -0.4
4,609,019 + +0.8
4,609,019 + +1.2
4,609,019 + +0.1
4,609,019 + -0.8
4,609,020 - -0.5
4,609,020 - +0.3
4,609,020 - -0.7
4,609,093 - -0.6
4,609,093 - -0.2
4,609,093 - +0.1
4,609,138 + +0.1
4,609,138 + +0.3
4,609,150 + +1.8
4,609,150 + -0.3
4,609,150 + +0.7
4,609,150 + -0.6
4,609,150 + +0.0
4,609,151 - -0.7
4,609,151 - -1.2
4,609,372 + +0.8
4,609,373 - +0.7
4,609,386 + -0.2
4,609,386 + -0.6
4,609,387 - +3.1
4,609,387 - +0.3
4,609,413 + +1.4
4,609,560 + Psyr_3871 0.16 -0.9
4,609,560 + Psyr_3871 0.16 -0.1
4,609,560 + Psyr_3871 0.16 +0.3
4,609,560 + Psyr_3871 0.16 -0.0
4,609,561 - Psyr_3871 0.16 -0.6
4,609,561 - Psyr_3871 0.16 +1.2
4,609,561 - Psyr_3871 0.16 -0.4

Or see this region's nucleotide sequence