Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3848 and Psyr_3849 are separated by 0 nucleotides Psyr_3849 and Psyr_3850 are separated by 256 nucleotides Psyr_3850 and Psyr_3851 are separated by 97 nucleotides
Psyr_3848: Psyr_3848 - L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein, at 4,587,255 to 4,588,022
_3848
Psyr_3849: Psyr_3849 - L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein, at 4,588,023 to 4,588,724
_3849
Psyr_3850: Psyr_3850 - lipoprotein, putative, at 4,588,981 to 4,589,661
_3850
Psyr_3851: Psyr_3851 - conserved hypothetical protein, at 4,589,759 to 4,591,372
_3851
Position (kb) 4588
4589
4590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4588.006 kb on - strand at 4588.020 kb on + strand at 4588.020 kb on + strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.054 kb on - strand at 4588.093 kb on + strand at 4588.093 kb on + strand at 4588.094 kb on - strand, within Psyr_3849 at 4588.094 kb on - strand, within Psyr_3849 at 4588.194 kb on - strand, within Psyr_3849 at 4588.200 kb on + strand, within Psyr_3849 at 4588.200 kb on + strand, within Psyr_3849 at 4588.200 kb on + strand, within Psyr_3849 at 4588.201 kb on - strand, within Psyr_3849 at 4588.201 kb on - strand, within Psyr_3849 at 4588.348 kb on - strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.637 kb on - strand, within Psyr_3849 at 4588.711 kb on - strand at 4588.817 kb on + strand at 4588.817 kb on + strand at 4588.818 kb on - strand at 4588.862 kb on + strand at 4588.863 kb on - strand at 4588.863 kb on - strand at 4589.007 kb on - strand at 4589.007 kb on - strand at 4589.007 kb on - strand at 4589.007 kb on - strand at 4589.018 kb on + strand at 4589.019 kb on - strand at 4589.161 kb on + strand, within Psyr_3850 at 4589.311 kb on + strand, within Psyr_3850 at 4589.464 kb on + strand, within Psyr_3850 at 4589.464 kb on + strand, within Psyr_3850 at 4589.534 kb on + strand, within Psyr_3850 at 4589.534 kb on + strand, within Psyr_3850 at 4589.535 kb on - strand, within Psyr_3850 at 4589.697 kb on - strand at 4589.698 kb on + strand at 4589.698 kb on + strand at 4589.698 kb on + strand at 4589.699 kb on - strand at 4589.699 kb on - strand at 4589.699 kb on - strand at 4589.714 kb on + strand at 4589.715 kb on - strand at 4589.715 kb on - strand at 4589.715 kb on - strand at 4589.715 kb on - strand at 4589.758 kb on - strand at 4589.763 kb on + strand at 4589.764 kb on - strand at 4589.867 kb on - strand at 4589.885 kb on + strand at 4589.886 kb on - strand at 4589.924 kb on + strand, within Psyr_3851 at 4589.924 kb on + strand, within Psyr_3851 at 4589.924 kb on + strand, within Psyr_3851 at 4589.925 kb on - strand, within Psyr_3851 at 4589.925 kb on - strand, within Psyr_3851 at 4589.925 kb on - strand, within Psyr_3851 at 4589.925 kb on - strand, within Psyr_3851 at 4589.925 kb on - strand, within Psyr_3851 at 4589.925 kb on - strand, within Psyr_3851 at 4590.014 kb on + strand, within Psyr_3851 at 4590.015 kb on - strand, within Psyr_3851 at 4590.015 kb on - strand, within Psyr_3851 at 4590.015 kb on - strand, within Psyr_3851 at 4590.015 kb on - strand, within Psyr_3851 at 4590.066 kb on + strand, within Psyr_3851 at 4590.067 kb on - strand, within Psyr_3851 at 4590.198 kb on + strand, within Psyr_3851 at 4590.267 kb on - strand, within Psyr_3851 at 4590.267 kb on - strand, within Psyr_3851 at 4590.350 kb on + strand, within Psyr_3851 at 4590.350 kb on + strand, within Psyr_3851 at 4590.350 kb on + strand, within Psyr_3851 at 4590.351 kb on - strand, within Psyr_3851 at 4590.351 kb on - strand, within Psyr_3851 at 4590.351 kb on - strand, within Psyr_3851 at 4590.351 kb on - strand, within Psyr_3851 at 4590.351 kb on - strand, within Psyr_3851 at 4590.351 kb on - strand, within Psyr_3851
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 4,588,006 - +2.4 4,588,020 + -0.6 4,588,020 + -1.7 4,588,021 - +0.2 4,588,021 - +0.6 4,588,021 - -1.2 4,588,021 - -0.2 4,588,021 - +0.3 4,588,021 - -0.4 4,588,054 - -1.0 4,588,093 + -0.6 4,588,093 + +1.8 4,588,094 - Psyr_3849 0.10 -0.2 4,588,094 - Psyr_3849 0.10 -1.0 4,588,194 - Psyr_3849 0.24 +0.3 4,588,200 + Psyr_3849 0.25 -0.7 4,588,200 + Psyr_3849 0.25 -0.5 4,588,200 + Psyr_3849 0.25 -0.3 4,588,201 - Psyr_3849 0.25 +0.1 4,588,201 - Psyr_3849 0.25 +0.3 4,588,348 - Psyr_3849 0.46 +0.4 4,588,632 + Psyr_3849 0.87 -0.3 4,588,632 + Psyr_3849 0.87 -1.3 4,588,632 + Psyr_3849 0.87 -0.4 4,588,632 + Psyr_3849 0.87 -0.6 4,588,637 - Psyr_3849 0.87 -0.5 4,588,711 - -0.5 4,588,817 + -0.9 4,588,817 + +0.4 4,588,818 - -1.5 4,588,862 + -0.3 4,588,863 - -0.5 4,588,863 - +0.0 4,589,007 - -0.5 4,589,007 - +0.4 4,589,007 - +0.5 4,589,007 - -0.3 4,589,018 + -0.0 4,589,019 - +0.2 4,589,161 + Psyr_3850 0.26 -0.4 4,589,311 + Psyr_3850 0.48 -1.3 4,589,464 + Psyr_3850 0.71 +0.0 4,589,464 + Psyr_3850 0.71 +0.4 4,589,534 + Psyr_3850 0.81 -0.6 4,589,534 + Psyr_3850 0.81 -0.2 4,589,535 - Psyr_3850 0.81 -0.4 4,589,697 - +0.3 4,589,698 + +0.5 4,589,698 + +2.6 4,589,698 + -0.0 4,589,699 - -0.5 4,589,699 - -0.7 4,589,699 - -0.4 4,589,714 + -0.5 4,589,715 - +0.0 4,589,715 - -0.1 4,589,715 - -0.9 4,589,715 - +0.7 4,589,758 - +0.7 4,589,763 + -1.8 4,589,764 - -1.4 4,589,867 - -0.4 4,589,885 + +0.1 4,589,886 - -0.5 4,589,924 + Psyr_3851 0.10 +0.2 4,589,924 + Psyr_3851 0.10 +0.8 4,589,924 + Psyr_3851 0.10 -0.8 4,589,925 - Psyr_3851 0.10 -0.6 4,589,925 - Psyr_3851 0.10 -0.6 4,589,925 - Psyr_3851 0.10 -0.0 4,589,925 - Psyr_3851 0.10 -0.9 4,589,925 - Psyr_3851 0.10 -1.2 4,589,925 - Psyr_3851 0.10 +2.4 4,590,014 + Psyr_3851 0.16 +0.9 4,590,015 - Psyr_3851 0.16 -1.2 4,590,015 - Psyr_3851 0.16 +0.4 4,590,015 - Psyr_3851 0.16 +0.8 4,590,015 - Psyr_3851 0.16 +0.5 4,590,066 + Psyr_3851 0.19 +0.2 4,590,067 - Psyr_3851 0.19 -0.8 4,590,198 + Psyr_3851 0.27 -0.1 4,590,267 - Psyr_3851 0.31 +1.4 4,590,267 - Psyr_3851 0.31 -1.3 4,590,350 + Psyr_3851 0.37 -0.3 4,590,350 + Psyr_3851 0.37 -0.8 4,590,350 + Psyr_3851 0.37 -0.3 4,590,351 - Psyr_3851 0.37 -0.4 4,590,351 - Psyr_3851 0.37 +0.9 4,590,351 - Psyr_3851 0.37 -1.5 4,590,351 - Psyr_3851 0.37 -1.2 4,590,351 - Psyr_3851 0.37 +1.8 4,590,351 - Psyr_3851 0.37 -1.6
Or see this region's nucleotide sequence