Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3423

Experiment: KB with Carbenicillin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Carbenicillin 250 ug/ml
4,086,487	+				+0.8
4,086,487	+				-0.4
4,086,487	+				+0.4
4,086,487	+				+1.4
4,086,487	+				+0.3
4,087,296	+				-2.7
4,087,361	+				-0.2
4,087,493	-				+0.6
4,087,515	+				-0.7
4,087,515	+				-0.1
4,087,515	+				-1.4
4,087,515	+				-0.1
4,087,515	+				+0.8
4,087,515	+				-0.8
4,087,515	+				+1.0
4,087,515	+				-1.0
4,087,515	+				-0.2
4,087,515	+				+1.1
4,087,515	+				+0.1
4,087,515	+				+0.1
4,087,516	-				-0.1
4,087,516	-				+2.2
4,087,516	-				-0.2
4,087,516	-				+0.6
4,087,516	-				+0.1
4,087,516	-				+0.4
4,087,516	-				-0.4
4,087,516	-				-0.5
4,087,516	-				+1.2
4,087,516	-				+0.9
4,087,546	-				-1.1
4,087,618	+		Psyr_3423	0.12	+2.8
4,087,619	-		Psyr_3423	0.12	+0.8
4,087,619	-		Psyr_3423	0.12	-2.4
4,087,619	-		Psyr_3423	0.12	-0.7
4,087,654	+		Psyr_3423	0.15	-1.6
4,087,654	+		Psyr_3423	0.15	+0.3
4,087,654	+		Psyr_3423	0.15	-0.6
4,087,730	+		Psyr_3423	0.20	+0.5
4,087,730	+		Psyr_3423	0.20	-1.6
4,087,731	-		Psyr_3423	0.20	-0.9
4,087,731	-		Psyr_3423	0.20	+0.3
4,087,731	-		Psyr_3423	0.20	-0.2
4,087,731	-		Psyr_3423	0.20	-0.1
4,087,885	+		Psyr_3423	0.31	-0.6
4,087,885	+		Psyr_3423	0.31	+0.8
4,087,886	-		Psyr_3423	0.31	+0.4
4,088,095	+		Psyr_3423	0.47	+0.5
4,088,096	-		Psyr_3423	0.47	+0.0
4,088,096	-		Psyr_3423	0.47	+0.6
4,088,096	-		Psyr_3423	0.47	-2.2
4,088,185	+		Psyr_3423	0.53	+0.2
4,088,185	+		Psyr_3423	0.53	-0.4
4,088,185	+		Psyr_3423	0.53	-0.1
4,088,185	+		Psyr_3423	0.53	+0.5
4,088,185	+		Psyr_3423	0.53	-0.9
4,088,185	+		Psyr_3423	0.53	-1.2
4,088,185	+		Psyr_3423	0.53	-1.4
4,088,185	+		Psyr_3423	0.53	-1.1
4,088,185	+		Psyr_3423	0.53	+0.3
4,088,186	-		Psyr_3423	0.53	-0.4
4,088,186	-		Psyr_3423	0.53	-1.7
4,088,186	-		Psyr_3423	0.53	+0.6
4,088,186	-		Psyr_3423	0.53	+0.3
4,088,186	-		Psyr_3423	0.53	-0.2
4,088,186	-		Psyr_3423	0.53	-1.6
4,088,311	+		Psyr_3423	0.62	-0.7
4,088,312	-		Psyr_3423	0.62	+0.0
4,088,312	-		Psyr_3423	0.62	-0.0
4,088,312	-		Psyr_3423	0.62	-1.2
4,088,398	+		Psyr_3423	0.68	+0.2
4,088,398	+		Psyr_3423	0.68	-0.5
4,088,398	+		Psyr_3423	0.68	-0.8
4,088,400	+		Psyr_3423	0.69	-0.4
4,088,400	+		Psyr_3423	0.69	-0.2
4,088,400	+		Psyr_3423	0.69	+2.3
4,088,401	-		Psyr_3423	0.69	+0.2
4,088,467	+		Psyr_3423	0.73	+0.2
4,088,656	+		Psyr_3423	0.87	+0.3
4,088,657	-		Psyr_3423	0.87	+0.8
4,088,657	-		Psyr_3423	0.87	-0.1
4,088,657	-		Psyr_3423	0.87	+0.3
4,088,789	-				-0.1
4,088,831	+				+0.3
4,088,831	+				+0.1
4,088,851	+				+0.0
4,088,852	-				-0.1
4,088,966	+		Psyr_3424	0.25	+0.2
4,088,967	-		Psyr_3424	0.25	+0.1
4,088,967	-		Psyr_3424	0.25	+2.0
4,088,967	-		Psyr_3424	0.25	-0.2
4,088,967	-		Psyr_3424	0.25	-0.7
4,089,253	+		Psyr_3424	0.86	+0.1
4,089,253	+		Psyr_3424	0.86	+0.3
4,089,253	+		Psyr_3424	0.86	-0.5
4,089,253	+		Psyr_3424	0.86	-1.7
4,089,254	-		Psyr_3424	0.86	+1.3
4,089,254	-		Psyr_3424	0.86	+0.2
4,089,254	-		Psyr_3424	0.86	+0.8
4,089,254	-		Psyr_3424	0.86	+0.6
4,089,254	-		Psyr_3424	0.86	+0.3
4,089,348	-				-0.0
4,089,440	+				+0.6
4,089,440	+				-0.3
4,089,440	+				+2.3
4,089,440	+				+0.1
4,089,440	+				+0.8
4,089,440	+				+0.5
4,089,441	-				-0.5
4,089,441	-				+1.9
4,089,441	-				-1.6
4,089,464	+				+0.3
4,089,464	+				+1.0
4,089,555	+		Psyr_3425	0.12	-0.2
4,089,555	+		Psyr_3425	0.12	+0.3
4,089,660	-		Psyr_3425	0.26	-1.0
4,089,694	+		Psyr_3425	0.30	+0.2
4,089,751	-				-0.6