Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3291 and Psyr_3292 are separated by 98 nucleotides Psyr_3292 and Psyr_3293 are separated by 130 nucleotides Psyr_3293 and Psyr_3294 are separated by 69 nucleotides
Psyr_3291: Psyr_3291 - hypothetical protein, at 3,939,243 to 3,939,536
_3291
Psyr_3292: Psyr_3292 - conserved hypothetical protein, at 3,939,635 to 3,940,072
_3292
Psyr_3293: Psyr_3293 - UspA, at 3,940,203 to 3,940,643
_3293
Psyr_3294: Psyr_3294 - ABC transporter, at 3,940,713 to 3,942,623
_3294
Position (kb)
3940
3941 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3939.304 kb on + strand, within Psyr_3291 at 3939.304 kb on + strand, within Psyr_3291 at 3939.304 kb on + strand, within Psyr_3291 at 3939.304 kb on + strand, within Psyr_3291 at 3939.305 kb on - strand, within Psyr_3291 at 3939.305 kb on - strand, within Psyr_3291 at 3939.307 kb on + strand, within Psyr_3291 at 3939.307 kb on + strand, within Psyr_3291 at 3939.320 kb on - strand, within Psyr_3291 at 3939.374 kb on + strand, within Psyr_3291 at 3939.462 kb on + strand, within Psyr_3291 at 3939.462 kb on + strand, within Psyr_3291 at 3939.703 kb on - strand, within Psyr_3292 at 3939.738 kb on + strand, within Psyr_3292 at 3939.738 kb on + strand, within Psyr_3292 at 3939.765 kb on + strand, within Psyr_3292 at 3939.880 kb on - strand, within Psyr_3292 at 3940.073 kb on - strand at 3940.104 kb on + strand at 3940.105 kb on - strand at 3940.209 kb on + strand at 3940.209 kb on + strand at 3940.210 kb on - strand at 3940.210 kb on - strand at 3940.431 kb on + strand, within Psyr_3293 at 3940.432 kb on - strand, within Psyr_3293 at 3940.562 kb on - strand, within Psyr_3293 at 3940.915 kb on + strand, within Psyr_3294 at 3940.915 kb on + strand, within Psyr_3294 at 3940.915 kb on + strand, within Psyr_3294 at 3940.916 kb on - strand, within Psyr_3294 at 3941.074 kb on + strand, within Psyr_3294 at 3941.075 kb on - strand, within Psyr_3294 at 3941.362 kb on + strand, within Psyr_3294 at 3941.362 kb on + strand, within Psyr_3294 at 3941.362 kb on + strand, within Psyr_3294 at 3941.363 kb on - strand, within Psyr_3294 at 3941.473 kb on + strand, within Psyr_3294 at 3941.492 kb on + strand, within Psyr_3294
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 3,939,304 + Psyr_3291 0.21 +1.7 3,939,304 + Psyr_3291 0.21 -0.2 3,939,304 + Psyr_3291 0.21 +0.7 3,939,304 + Psyr_3291 0.21 -0.3 3,939,305 - Psyr_3291 0.21 -1.0 3,939,305 - Psyr_3291 0.21 +1.4 3,939,307 + Psyr_3291 0.22 +0.9 3,939,307 + Psyr_3291 0.22 +1.4 3,939,320 - Psyr_3291 0.26 -0.1 3,939,374 + Psyr_3291 0.45 -0.9 3,939,462 + Psyr_3291 0.74 +0.5 3,939,462 + Psyr_3291 0.74 +2.0 3,939,703 - Psyr_3292 0.16 -0.3 3,939,738 + Psyr_3292 0.24 -1.6 3,939,738 + Psyr_3292 0.24 -2.8 3,939,765 + Psyr_3292 0.30 -3.0 3,939,880 - Psyr_3292 0.56 -1.3 3,940,073 - +1.1 3,940,104 + +0.2 3,940,105 - +0.4 3,940,209 + +0.2 3,940,209 + +0.7 3,940,210 - -1.1 3,940,210 - +0.1 3,940,431 + Psyr_3293 0.52 -1.1 3,940,432 - Psyr_3293 0.52 -0.3 3,940,562 - Psyr_3293 0.81 -0.9 3,940,915 + Psyr_3294 0.11 +0.3 3,940,915 + Psyr_3294 0.11 -0.6 3,940,915 + Psyr_3294 0.11 -0.6 3,940,916 - Psyr_3294 0.11 -1.1 3,941,074 + Psyr_3294 0.19 -0.5 3,941,075 - Psyr_3294 0.19 +1.3 3,941,362 + Psyr_3294 0.34 +1.0 3,941,362 + Psyr_3294 0.34 -1.6 3,941,362 + Psyr_3294 0.34 +0.3 3,941,363 - Psyr_3294 0.34 -0.3 3,941,473 + Psyr_3294 0.40 +0.1 3,941,492 + Psyr_3294 0.41 +1.3
Or see this region's nucleotide sequence