Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2959

Experiment: KB with Carbenicillin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2958 and Psyr_2959 overlap by 4 nucleotidesPsyr_2959 and Psyr_2960 are separated by 4 nucleotidesPsyr_2960 and Psyr_2961 overlap by 4 nucleotides Psyr_2958: Psyr_2958 - extracellular solute-binding protein, family 5, at 3,545,617 to 3,547,248 _2958 Psyr_2959: Psyr_2959 - Binding-protein-dependent transport systems inner membrane component, at 3,547,245 to 3,548,195 _2959 Psyr_2960: Psyr_2960 - Binding-protein-dependent transport systems inner membrane component, at 3,548,200 to 3,549,132 _2960 Psyr_2961: Psyr_2961 - ABC transporter, at 3,549,129 to 3,550,772 _2961 Position (kb) 3547 3548 3549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3546.278 kb on - strand, within Psyr_2958at 3546.343 kb on + strand, within Psyr_2958at 3546.343 kb on + strand, within Psyr_2958at 3546.344 kb on - strand, within Psyr_2958at 3546.344 kb on - strand, within Psyr_2958at 3546.344 kb on - strand, within Psyr_2958at 3546.540 kb on + strand, within Psyr_2958at 3546.584 kb on - strand, within Psyr_2958at 3546.584 kb on - strand, within Psyr_2958at 3546.584 kb on - strand, within Psyr_2958at 3546.599 kb on - strand, within Psyr_2958at 3546.599 kb on - strand, within Psyr_2958at 3546.642 kb on + strand, within Psyr_2958at 3546.643 kb on - strand, within Psyr_2958at 3546.643 kb on - strand, within Psyr_2958at 3546.643 kb on - strand, within Psyr_2958at 3546.778 kb on + strand, within Psyr_2958at 3546.779 kb on - strand, within Psyr_2958at 3546.779 kb on - strand, within Psyr_2958at 3546.779 kb on - strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.812 kb on + strand, within Psyr_2958at 3546.813 kb on - strand, within Psyr_2958at 3546.907 kb on + strand, within Psyr_2958at 3546.907 kb on + strand, within Psyr_2958at 3546.907 kb on + strand, within Psyr_2958at 3546.907 kb on + strand, within Psyr_2958at 3546.908 kb on - strand, within Psyr_2958at 3546.908 kb on - strand, within Psyr_2958at 3546.919 kb on + strand, within Psyr_2958at 3546.919 kb on + strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.920 kb on - strand, within Psyr_2958at 3546.925 kb on + strand, within Psyr_2958at 3546.925 kb on + strand, within Psyr_2958at 3546.925 kb on + strand, within Psyr_2958at 3546.925 kb on + strand, within Psyr_2958at 3546.925 kb on + strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3546.926 kb on - strand, within Psyr_2958at 3547.182 kb on - strandat 3547.255 kb on - strandat 3547.257 kb on - strandat 3547.288 kb on + strandat 3547.314 kb on + strandat 3547.314 kb on + strandat 3547.314 kb on + strandat 3547.314 kb on + strandat 3547.314 kb on + strandat 3547.315 kb on - strandat 3547.315 kb on - strandat 3547.315 kb on - strandat 3547.326 kb on + strandat 3547.422 kb on + strand, within Psyr_2959at 3547.423 kb on - strand, within Psyr_2959at 3547.423 kb on - strand, within Psyr_2959at 3547.455 kb on + strand, within Psyr_2959at 3547.455 kb on + strand, within Psyr_2959at 3547.627 kb on - strand, within Psyr_2959at 3547.627 kb on - strand, within Psyr_2959at 3547.630 kb on + strand, within Psyr_2959at 3547.783 kb on + strand, within Psyr_2959at 3547.824 kb on + strand, within Psyr_2959at 3547.825 kb on - strand, within Psyr_2959at 3547.825 kb on - strand, within Psyr_2959at 3547.872 kb on + strand, within Psyr_2959at 3547.872 kb on + strand, within Psyr_2959at 3547.872 kb on + strand, within Psyr_2959at 3547.872 kb on + strand, within Psyr_2959at 3547.873 kb on - strand, within Psyr_2959at 3547.873 kb on - strand, within Psyr_2959at 3547.873 kb on - strand, within Psyr_2959at 3548.084 kb on - strand, within Psyr_2959at 3548.084 kb on - strand, within Psyr_2959at 3548.206 kb on - strandat 3548.206 kb on - strandat 3548.425 kb on + strand, within Psyr_2960at 3548.425 kb on + strand, within Psyr_2960at 3548.425 kb on + strand, within Psyr_2960at 3548.426 kb on - strand, within Psyr_2960at 3548.434 kb on + strand, within Psyr_2960at 3548.516 kb on - strandat 3548.663 kb on + strand, within Psyr_2960at 3548.663 kb on + strand, within Psyr_2960at 3548.663 kb on + strand, within Psyr_2960at 3548.664 kb on - strand, within Psyr_2960at 3548.664 kb on - strand, within Psyr_2960at 3548.664 kb on - strand, within Psyr_2960at 3548.664 kb on - strand, within Psyr_2960at 3548.664 kb on - strand, within Psyr_2960at 3548.664 kb on - strand, within Psyr_2960at 3548.819 kb on - strand, within Psyr_2960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
remove
3,546,278 - Psyr_2958 0.41 +1.3
3,546,343 + Psyr_2958 0.44 +2.0
3,546,343 + Psyr_2958 0.44 +1.0
3,546,344 - Psyr_2958 0.45 -1.3
3,546,344 - Psyr_2958 0.45 -1.3
3,546,344 - Psyr_2958 0.45 -1.3
3,546,540 + Psyr_2958 0.57 -0.3
3,546,584 - Psyr_2958 0.59 +1.0
3,546,584 - Psyr_2958 0.59 +0.2
3,546,584 - Psyr_2958 0.59 +0.7
3,546,599 - Psyr_2958 0.60 -1.9
3,546,599 - Psyr_2958 0.60 +1.2
3,546,642 + Psyr_2958 0.63 -0.3
3,546,643 - Psyr_2958 0.63 -0.6
3,546,643 - Psyr_2958 0.63 -0.3
3,546,643 - Psyr_2958 0.63 -0.6
3,546,778 + Psyr_2958 0.71 -0.9
3,546,779 - Psyr_2958 0.71 +1.7
3,546,779 - Psyr_2958 0.71 +0.3
3,546,779 - Psyr_2958 0.71 -0.2
3,546,812 + Psyr_2958 0.73 +1.4
3,546,812 + Psyr_2958 0.73 +0.4
3,546,812 + Psyr_2958 0.73 -0.9
3,546,812 + Psyr_2958 0.73 +0.7
3,546,812 + Psyr_2958 0.73 +0.1
3,546,812 + Psyr_2958 0.73 -0.6
3,546,812 + Psyr_2958 0.73 +1.7
3,546,813 - Psyr_2958 0.73 +1.0
3,546,907 + Psyr_2958 0.79 +0.3
3,546,907 + Psyr_2958 0.79 +0.4
3,546,907 + Psyr_2958 0.79 +0.4
3,546,907 + Psyr_2958 0.79 +0.7
3,546,908 - Psyr_2958 0.79 +0.5
3,546,908 - Psyr_2958 0.79 -0.5
3,546,919 + Psyr_2958 0.80 -2.1
3,546,919 + Psyr_2958 0.80 -0.3
3,546,920 - Psyr_2958 0.80 +1.8
3,546,920 - Psyr_2958 0.80 -0.1
3,546,920 - Psyr_2958 0.80 -0.7
3,546,920 - Psyr_2958 0.80 -0.7
3,546,920 - Psyr_2958 0.80 +0.1
3,546,920 - Psyr_2958 0.80 +0.2
3,546,920 - Psyr_2958 0.80 +0.5
3,546,920 - Psyr_2958 0.80 +0.5
3,546,925 + Psyr_2958 0.80 -0.1
3,546,925 + Psyr_2958 0.80 -0.2
3,546,925 + Psyr_2958 0.80 +0.4
3,546,925 + Psyr_2958 0.80 +0.3
3,546,925 + Psyr_2958 0.80 +0.1
3,546,926 - Psyr_2958 0.80 +0.6
3,546,926 - Psyr_2958 0.80 +2.8
3,546,926 - Psyr_2958 0.80 +0.3
3,546,926 - Psyr_2958 0.80 +1.5
3,546,926 - Psyr_2958 0.80 +0.9
3,546,926 - Psyr_2958 0.80 -1.0
3,546,926 - Psyr_2958 0.80 -1.6
3,546,926 - Psyr_2958 0.80 -0.9
3,546,926 - Psyr_2958 0.80 +0.8
3,546,926 - Psyr_2958 0.80 +0.1
3,546,926 - Psyr_2958 0.80 -0.0
3,547,182 - +0.0
3,547,255 - +0.5
3,547,257 - -0.5
3,547,288 + +0.8
3,547,314 + +0.9
3,547,314 + -0.3
3,547,314 + -1.7
3,547,314 + +0.7
3,547,314 + +1.2
3,547,315 - +0.3
3,547,315 - +0.5
3,547,315 - -0.9
3,547,326 + +0.0
3,547,422 + Psyr_2959 0.19 +2.1
3,547,423 - Psyr_2959 0.19 +1.0
3,547,423 - Psyr_2959 0.19 +1.4
3,547,455 + Psyr_2959 0.22 -0.3
3,547,455 + Psyr_2959 0.22 +0.4
3,547,627 - Psyr_2959 0.40 -0.9
3,547,627 - Psyr_2959 0.40 +0.8
3,547,630 + Psyr_2959 0.40 +1.1
3,547,783 + Psyr_2959 0.57 -1.7
3,547,824 + Psyr_2959 0.61 -0.1
3,547,825 - Psyr_2959 0.61 -0.7
3,547,825 - Psyr_2959 0.61 +0.9
3,547,872 + Psyr_2959 0.66 +0.1
3,547,872 + Psyr_2959 0.66 +0.7
3,547,872 + Psyr_2959 0.66 +1.7
3,547,872 + Psyr_2959 0.66 +1.0
3,547,873 - Psyr_2959 0.66 -0.9
3,547,873 - Psyr_2959 0.66 -0.7
3,547,873 - Psyr_2959 0.66 +0.3
3,548,084 - Psyr_2959 0.88 +0.3
3,548,084 - Psyr_2959 0.88 +0.1
3,548,206 - -0.1
3,548,206 - -0.0
3,548,425 + Psyr_2960 0.24 -0.5
3,548,425 + Psyr_2960 0.24 -0.3
3,548,425 + Psyr_2960 0.24 -2.2
3,548,426 - Psyr_2960 0.24 +0.4
3,548,434 + Psyr_2960 0.25 +0.1
3,548,516 - +0.7
3,548,663 + Psyr_2960 0.50 +0.2
3,548,663 + Psyr_2960 0.50 +0.3
3,548,663 + Psyr_2960 0.50 +0.3
3,548,664 - Psyr_2960 0.50 +0.5
3,548,664 - Psyr_2960 0.50 +1.5
3,548,664 - Psyr_2960 0.50 -0.3
3,548,664 - Psyr_2960 0.50 -0.2
3,548,664 - Psyr_2960 0.50 -0.5
3,548,664 - Psyr_2960 0.50 -0.2
3,548,819 - Psyr_2960 0.66 +0.4

Or see this region's nucleotide sequence