Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2950

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2948 and Psyr_2949 are separated by 85 nucleotidesPsyr_2949 and Psyr_2950 are separated by 198 nucleotidesPsyr_2950 and Psyr_2951 are separated by 126 nucleotides Psyr_2948: Psyr_2948 - Nitroreductase, at 3,537,212 to 3,537,856 _2948 Psyr_2949: Psyr_2949 - conserved hypothetical protein, at 3,537,942 to 3,538,526 _2949 Psyr_2950: Psyr_2950 - putative hydrolase signal peptide protein, at 3,538,725 to 3,539,672 _2950 Psyr_2951: Psyr_2951 - transcriptional regulator, LysR family, at 3,539,799 to 3,540,698 _2951 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3537.850 kb on + strandat 3537.854 kb on + strandat 3537.854 kb on + strandat 3538.100 kb on + strand, within Psyr_2949at 3538.100 kb on + strand, within Psyr_2949at 3538.100 kb on + strand, within Psyr_2949at 3538.101 kb on - strand, within Psyr_2949at 3538.156 kb on - strand, within Psyr_2949at 3538.174 kb on + strand, within Psyr_2949at 3538.174 kb on + strand, within Psyr_2949at 3538.175 kb on - strand, within Psyr_2949at 3538.175 kb on - strand, within Psyr_2949at 3538.206 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.389 kb on - strand, within Psyr_2949at 3538.389 kb on - strand, within Psyr_2949at 3538.389 kb on - strand, within Psyr_2949at 3538.464 kb on + strand, within Psyr_2949at 3538.464 kb on + strand, within Psyr_2949at 3538.465 kb on - strand, within Psyr_2949at 3538.535 kb on + strandat 3538.535 kb on + strandat 3538.535 kb on + strandat 3538.535 kb on + strandat 3538.536 kb on - strandat 3538.536 kb on - strandat 3538.536 kb on - strandat 3538.536 kb on - strandat 3538.706 kb on + strandat 3538.707 kb on - strandat 3538.707 kb on - strandat 3538.731 kb on + strandat 3538.738 kb on + strandat 3538.739 kb on - strandat 3538.814 kb on + strandat 3538.815 kb on - strandat 3538.815 kb on - strandat 3538.827 kb on - strand, within Psyr_2950at 3538.868 kb on + strand, within Psyr_2950at 3538.944 kb on + strand, within Psyr_2950at 3538.945 kb on - strand, within Psyr_2950at 3538.977 kb on + strand, within Psyr_2950at 3538.978 kb on - strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3539.145 kb on + strand, within Psyr_2950at 3539.146 kb on - strand, within Psyr_2950at 3539.212 kb on - strand, within Psyr_2950at 3539.212 kb on - strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.293 kb on - strand, within Psyr_2950at 3539.293 kb on - strand, within Psyr_2950at 3539.426 kb on + strand, within Psyr_2950at 3539.427 kb on - strand, within Psyr_2950at 3539.427 kb on - strand, within Psyr_2950at 3539.520 kb on + strand, within Psyr_2950at 3539.586 kb on + strandat 3539.586 kb on + strandat 3539.587 kb on - strandat 3539.587 kb on - strandat 3539.754 kb on + strandat 3539.770 kb on + strandat 3539.770 kb on + strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.773 kb on - strandat 3539.856 kb on + strandat 3539.857 kb on - strandat 3539.857 kb on - strandat 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.931 kb on + strand, within Psyr_2951at 3539.931 kb on + strand, within Psyr_2951at 3539.955 kb on + strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.218 kb on + strand, within Psyr_2951at 3540.251 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.285 kb on - strand, within Psyr_2951at 3540.502 kb on + strand, within Psyr_2951at 3540.502 kb on + strand, within Psyr_2951

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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3,537,850 + -0.2
3,537,854 + +1.0
3,537,854 + +0.3
3,538,100 + Psyr_2949 0.27 -0.5
3,538,100 + Psyr_2949 0.27 +0.7
3,538,100 + Psyr_2949 0.27 -0.7
3,538,101 - Psyr_2949 0.27 +0.4
3,538,156 - Psyr_2949 0.37 -0.7
3,538,174 + Psyr_2949 0.40 +1.0
3,538,174 + Psyr_2949 0.40 -0.1
3,538,175 - Psyr_2949 0.40 +0.4
3,538,175 - Psyr_2949 0.40 +2.5
3,538,206 + Psyr_2949 0.45 +1.3
3,538,388 + Psyr_2949 0.76 -0.7
3,538,388 + Psyr_2949 0.76 +0.5
3,538,388 + Psyr_2949 0.76 +0.2
3,538,388 + Psyr_2949 0.76 -1.3
3,538,389 - Psyr_2949 0.76 -0.3
3,538,389 - Psyr_2949 0.76 +0.8
3,538,389 - Psyr_2949 0.76 -0.2
3,538,464 + Psyr_2949 0.89 -0.1
3,538,464 + Psyr_2949 0.89 +0.2
3,538,465 - Psyr_2949 0.89 +0.9
3,538,535 + +0.4
3,538,535 + +0.2
3,538,535 + +0.7
3,538,535 + -2.1
3,538,536 - +3.0
3,538,536 - -2.3
3,538,536 - +0.2
3,538,536 - -0.9
3,538,706 + +1.8
3,538,707 - -0.3
3,538,707 - +0.1
3,538,731 + -4.0
3,538,738 + -0.7
3,538,739 - -0.4
3,538,814 + -0.0
3,538,815 - +0.4
3,538,815 - -0.3
3,538,827 - Psyr_2950 0.11 -0.6
3,538,868 + Psyr_2950 0.15 -0.8
3,538,944 + Psyr_2950 0.23 -0.3
3,538,945 - Psyr_2950 0.23 -0.9
3,538,977 + Psyr_2950 0.27 +0.1
3,538,978 - Psyr_2950 0.27 +0.3
3,538,986 + Psyr_2950 0.28 +0.8
3,538,986 + Psyr_2950 0.28 +1.1
3,538,986 + Psyr_2950 0.28 -0.0
3,538,986 + Psyr_2950 0.28 +0.4
3,538,986 + Psyr_2950 0.28 -0.7
3,538,986 + Psyr_2950 0.28 +0.5
3,538,986 + Psyr_2950 0.28 +1.7
3,538,986 + Psyr_2950 0.28 -0.1
3,538,986 + Psyr_2950 0.28 -0.8
3,538,986 + Psyr_2950 0.28 +0.5
3,538,986 + Psyr_2950 0.28 -0.5
3,538,986 + Psyr_2950 0.28 +0.1
3,538,986 + Psyr_2950 0.28 -0.5
3,538,986 + Psyr_2950 0.28 +0.4
3,538,987 - Psyr_2950 0.28 -0.2
3,538,987 - Psyr_2950 0.28 -1.5
3,538,987 - Psyr_2950 0.28 -0.2
3,538,987 - Psyr_2950 0.28 -1.3
3,538,987 - Psyr_2950 0.28 +1.3
3,538,987 - Psyr_2950 0.28 -0.5
3,538,987 - Psyr_2950 0.28 -1.1
3,538,987 - Psyr_2950 0.28 +0.6
3,538,987 - Psyr_2950 0.28 +0.5
3,538,987 - Psyr_2950 0.28 -0.1
3,538,987 - Psyr_2950 0.28 -0.6
3,538,987 - Psyr_2950 0.28 +0.2
3,538,987 - Psyr_2950 0.28 +1.2
3,538,987 - Psyr_2950 0.28 +0.2
3,538,987 - Psyr_2950 0.28 +1.1
3,538,987 - Psyr_2950 0.28 +0.1
3,539,145 + Psyr_2950 0.44 +1.0
3,539,146 - Psyr_2950 0.44 -0.3
3,539,212 - Psyr_2950 0.51 +0.4
3,539,212 - Psyr_2950 0.51 +1.5
3,539,292 + Psyr_2950 0.60 +0.4
3,539,292 + Psyr_2950 0.60 -0.9
3,539,292 + Psyr_2950 0.60 -2.5
3,539,293 - Psyr_2950 0.60 +0.9
3,539,293 - Psyr_2950 0.60 -0.1
3,539,426 + Psyr_2950 0.74 +0.1
3,539,427 - Psyr_2950 0.74 -1.0
3,539,427 - Psyr_2950 0.74 +2.6
3,539,520 + Psyr_2950 0.84 -0.3
3,539,586 + -1.2
3,539,586 + -1.1
3,539,587 - +0.4
3,539,587 - +1.1
3,539,754 + -2.6
3,539,770 + +0.5
3,539,770 + -1.5
3,539,771 - +1.2
3,539,771 - -0.0
3,539,771 - +0.6
3,539,771 - -2.2
3,539,771 - -0.6
3,539,771 - +0.2
3,539,773 - +0.1
3,539,856 + -0.9
3,539,857 - +0.4
3,539,857 - -1.2
3,539,897 - Psyr_2951 0.11 +1.1
3,539,897 - Psyr_2951 0.11 +0.3
3,539,897 - Psyr_2951 0.11 +0.3
3,539,897 - Psyr_2951 0.11 +0.3
3,539,897 - Psyr_2951 0.11 -1.5
3,539,931 + Psyr_2951 0.15 -1.2
3,539,931 + Psyr_2951 0.15 -0.8
3,539,955 + Psyr_2951 0.17 -2.5
3,539,973 - Psyr_2951 0.19 -0.6
3,539,973 - Psyr_2951 0.19 -0.2
3,539,973 - Psyr_2951 0.19 -0.9
3,540,038 + Psyr_2951 0.27 -0.0
3,540,038 + Psyr_2951 0.27 -1.3
3,540,038 + Psyr_2951 0.27 +0.9
3,540,038 + Psyr_2951 0.27 -1.2
3,540,038 + Psyr_2951 0.27 -1.1
3,540,039 - Psyr_2951 0.27 -0.1
3,540,039 - Psyr_2951 0.27 +0.1
3,540,039 - Psyr_2951 0.27 +0.1
3,540,039 - Psyr_2951 0.27 -1.5
3,540,039 - Psyr_2951 0.27 -1.1
3,540,039 - Psyr_2951 0.27 +0.1
3,540,039 - Psyr_2951 0.27 +0.3
3,540,218 + Psyr_2951 0.47 +1.7
3,540,251 + Psyr_2951 0.50 -1.1
3,540,284 + Psyr_2951 0.54 +0.7
3,540,284 + Psyr_2951 0.54 +0.4
3,540,284 + Psyr_2951 0.54 -0.8
3,540,285 - Psyr_2951 0.54 +0.7
3,540,502 + Psyr_2951 0.78 +0.4
3,540,502 + Psyr_2951 0.78 +0.4

Or see this region's nucleotide sequence