Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1773

Experiment: KB with Carbenicillin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Carbenicillin 250 ug/ml
2,017,946	+		Psyr_1772	0.61	+0.1
2,017,947	-		Psyr_1772	0.62	-2.6
2,018,020	+		Psyr_1772	0.68	-0.3
2,018,020	+		Psyr_1772	0.68	-1.1
2,018,020	+		Psyr_1772	0.68	+1.0
2,018,021	-		Psyr_1772	0.68	-0.4
2,018,021	-		Psyr_1772	0.68	+0.1
2,018,174	+		Psyr_1772	0.81	+0.5
2,018,174	+		Psyr_1772	0.81	+0.6
2,018,175	-		Psyr_1772	0.81	-0.6
2,018,588	+				-0.4
2,018,749	+				+1.2
2,018,817	+				-1.3
2,018,824	+				+0.3
2,018,824	+				+0.7
2,018,824	+				+0.7
2,018,825	-				-0.6
2,018,825	-				-1.4
2,018,953	+				+0.5
2,018,953	+				+0.9
2,018,954	-				-1.3
2,018,954	-				+0.2
2,019,109	+		Psyr_1773	0.11	+1.6
2,019,109	+		Psyr_1773	0.11	+2.7
2,019,109	+		Psyr_1773	0.11	+1.7
2,019,109	+		Psyr_1773	0.11	+0.7
2,019,109	+		Psyr_1773	0.11	+0.2
2,019,109	+		Psyr_1773	0.11	+0.9
2,019,109	+		Psyr_1773	0.11	-0.8
2,019,109	+		Psyr_1773	0.11	+0.4
2,019,109	+		Psyr_1773	0.11	-0.7
2,019,109	+		Psyr_1773	0.11	-0.6
2,019,110	-		Psyr_1773	0.11	-0.3
2,019,110	-		Psyr_1773	0.11	-0.8
2,019,110	-		Psyr_1773	0.11	-0.6
2,019,110	-		Psyr_1773	0.11	-0.2
2,019,110	-		Psyr_1773	0.11	+0.4
2,019,110	-		Psyr_1773	0.11	+0.5
2,019,110	-		Psyr_1773	0.11	-1.0
2,019,110	-		Psyr_1773	0.11	-1.1
2,019,110	-		Psyr_1773	0.11	+0.0
2,019,110	-		Psyr_1773	0.11	+2.7
2,019,110	-		Psyr_1773	0.11	-0.1
2,019,169	+		Psyr_1773	0.15	+0.6
2,019,170	-		Psyr_1773	0.15	+0.4
2,019,216	-		Psyr_1773	0.18	+0.6
2,019,293	+		Psyr_1773	0.23	+0.2
2,019,400	+		Psyr_1773	0.29	+0.3
2,019,400	+		Psyr_1773	0.29	+1.1
2,019,400	+		Psyr_1773	0.29	+1.7
2,019,400	+		Psyr_1773	0.29	+0.7
2,019,400	+		Psyr_1773	0.29	+0.7
2,019,400	+		Psyr_1773	0.29	-0.4
2,019,400	+		Psyr_1773	0.29	-0.5
2,019,400	+		Psyr_1773	0.29	+0.7
2,019,400	+		Psyr_1773	0.29	-0.6
2,019,400	+		Psyr_1773	0.29	+2.4
2,019,400	+		Psyr_1773	0.29	-0.6
2,019,400	+		Psyr_1773	0.29	+0.3
2,019,400	+		Psyr_1773	0.29	+1.2
2,019,401	-		Psyr_1773	0.29	-0.3
2,019,401	-		Psyr_1773	0.29	+0.1
2,019,401	-		Psyr_1773	0.29	-1.3
2,019,401	-		Psyr_1773	0.29	+0.6
2,019,401	-		Psyr_1773	0.29	+1.1
2,019,401	-		Psyr_1773	0.29	+1.7
2,019,401	-		Psyr_1773	0.29	+0.6
2,019,401	-		Psyr_1773	0.29	-0.6
2,019,401	-		Psyr_1773	0.29	-0.2
2,019,401	-		Psyr_1773	0.29	+1.6
2,019,401	-		Psyr_1773	0.29	-0.3
2,019,443	+		Psyr_1773	0.32	-1.0
2,019,444	-		Psyr_1773	0.32	-0.4
2,019,458	-		Psyr_1773	0.33	+0.2
2,019,458	-		Psyr_1773	0.33	+2.1
2,019,541	+		Psyr_1773	0.38	-0.4
2,019,612	+		Psyr_1773	0.42	-0.7
2,019,612	+		Psyr_1773	0.42	+1.0
2,019,613	-		Psyr_1773	0.42	-0.1
2,019,674	-		Psyr_1773	0.46	+1.2
2,019,829	+		Psyr_1773	0.56	+0.4
2,019,829	+		Psyr_1773	0.56	+0.1
2,019,830	-		Psyr_1773	0.56	+1.0
2,019,830	-		Psyr_1773	0.56	+0.5
2,020,258	+		Psyr_1773	0.82	+0.3
2,020,258	+		Psyr_1773	0.82	+0.3
2,020,258	+		Psyr_1773	0.82	+0.7
2,020,258	+		Psyr_1773	0.82	-0.3
2,020,259	-		Psyr_1773	0.82	+0.9
2,020,259	-		Psyr_1773	0.82	+0.9
2,020,259	-		Psyr_1773	0.82	+0.7
2,020,453	-				-1.0
2,020,453	-				+0.4
2,020,453	-				+0.7
2,020,539	-				-1.1
2,020,539	-				+0.9
2,020,569	+				-0.7
2,020,611	+				-0.1
2,020,612	-				+0.2
2,020,612	-				-1.8
2,020,674	+				+0.2
2,020,852	+		Psyr_1774	0.17	+0.7
2,020,864	+		Psyr_1774	0.18	+0.7
2,020,864	+		Psyr_1774	0.18	-1.4
2,020,864	+		Psyr_1774	0.18	-0.4
2,020,865	-		Psyr_1774	0.18	-0.3
2,020,865	-		Psyr_1774	0.18	+0.2
2,020,904	+		Psyr_1774	0.22	+0.0