Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1672

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1671 and Psyr_1672 are separated by 346 nucleotidesPsyr_1672 and Psyr_1673 are separated by 557 nucleotides Psyr_1671: Psyr_1671 - lipoprotein, putative, at 1,876,820 to 1,877,644 _1671 Psyr_1672: Psyr_1672 - L-threonine ammonia-lyase, at 1,877,991 to 1,879,526 _1672 Psyr_1673: Psyr_1673 - transcriptional regulator, AraC family, at 1,880,084 to 1,881,124 _1673 Position (kb) 1877 1878 1879 1880Strain fitness (log2 ratio) -2 -1 0 1 2at 1877.012 kb on + strand, within Psyr_1671at 1877.012 kb on + strand, within Psyr_1671at 1877.012 kb on + strand, within Psyr_1671at 1877.012 kb on + strand, within Psyr_1671at 1877.013 kb on - strand, within Psyr_1671at 1877.013 kb on - strand, within Psyr_1671at 1877.013 kb on - strand, within Psyr_1671at 1877.013 kb on - strand, within Psyr_1671at 1877.014 kb on + strand, within Psyr_1671at 1877.015 kb on - strand, within Psyr_1671at 1877.015 kb on - strand, within Psyr_1671at 1877.015 kb on - strand, within Psyr_1671at 1877.208 kb on + strand, within Psyr_1671at 1877.208 kb on + strand, within Psyr_1671at 1877.209 kb on - strand, within Psyr_1671at 1877.605 kb on + strandat 1877.606 kb on - strandat 1877.642 kb on + strandat 1877.643 kb on - strandat 1877.643 kb on - strandat 1877.980 kb on + strandat 1878.640 kb on + strand, within Psyr_1672at 1878.640 kb on + strand, within Psyr_1672at 1878.640 kb on + strand, within Psyr_1672at 1878.640 kb on + strand, within Psyr_1672at 1878.641 kb on - strand, within Psyr_1672at 1878.641 kb on - strand, within Psyr_1672at 1878.641 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1878.704 kb on - strand, within Psyr_1672at 1879.081 kb on + strand, within Psyr_1672at 1879.081 kb on + strand, within Psyr_1672at 1879.339 kb on + strand, within Psyr_1672at 1879.462 kb on + strandat 1879.495 kb on + strandat 1879.495 kb on + strandat 1879.495 kb on + strandat 1879.495 kb on + strandat 1879.495 kb on + strandat 1879.496 kb on - strandat 1879.496 kb on - strandat 1879.496 kb on - strandat 1879.496 kb on - strandat 1879.496 kb on - strandat 1879.496 kb on - strandat 1879.496 kb on - strandat 1879.542 kb on + strandat 1879.542 kb on + strandat 1879.542 kb on + strandat 1879.542 kb on + strandat 1879.542 kb on + strandat 1879.542 kb on + strandat 1879.543 kb on - strandat 1879.543 kb on - strandat 1879.543 kb on - strandat 1879.543 kb on - strandat 1879.745 kb on + strandat 1879.745 kb on + strandat 1879.745 kb on + strandat 1879.745 kb on + strandat 1879.746 kb on - strandat 1879.748 kb on + strandat 1879.749 kb on - strandat 1879.836 kb on - strandat 1879.919 kb on - strandat 1879.919 kb on - strandat 1879.919 kb on - strandat 1879.941 kb on - strandat 1879.955 kb on + strandat 1880.000 kb on + strandat 1880.013 kb on + strandat 1880.013 kb on + strandat 1880.013 kb on + strandat 1880.013 kb on + strandat 1880.013 kb on + strandat 1880.013 kb on + strandat 1880.014 kb on - strandat 1880.188 kb on - strand, within Psyr_1673at 1880.226 kb on + strand, within Psyr_1673at 1880.226 kb on + strand, within Psyr_1673at 1880.226 kb on + strand, within Psyr_1673at 1880.226 kb on + strand, within Psyr_1673at 1880.226 kb on + strandat 1880.227 kb on - strand, within Psyr_1673at 1880.227 kb on - strand, within Psyr_1673at 1880.227 kb on - strand, within Psyr_1673at 1880.227 kb on - strand, within Psyr_1673at 1880.227 kb on - strand, within Psyr_1673at 1880.278 kb on + strand, within Psyr_1673at 1880.278 kb on + strand, within Psyr_1673at 1880.278 kb on + strand, within Psyr_1673at 1880.278 kb on + strand, within Psyr_1673at 1880.278 kb on + strand, within Psyr_1673at 1880.278 kb on + strand, within Psyr_1673at 1880.279 kb on - strand, within Psyr_1673at 1880.279 kb on - strand, within Psyr_1673at 1880.279 kb on - strand, within Psyr_1673at 1880.279 kb on - strand, within Psyr_1673at 1880.470 kb on + strand, within Psyr_1673at 1880.470 kb on + strand, within Psyr_1673at 1880.471 kb on - strand, within Psyr_1673at 1880.471 kb on - strand, within Psyr_1673

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,877,012 + Psyr_1671 0.23 -1.0
1,877,012 + Psyr_1671 0.23 -0.9
1,877,012 + Psyr_1671 0.23 -0.4
1,877,012 + Psyr_1671 0.23 -1.0
1,877,013 - Psyr_1671 0.23 +0.8
1,877,013 - Psyr_1671 0.23 -1.4
1,877,013 - Psyr_1671 0.23 +0.6
1,877,013 - Psyr_1671 0.23 -1.8
1,877,014 + Psyr_1671 0.24 +1.8
1,877,015 - Psyr_1671 0.24 -0.2
1,877,015 - Psyr_1671 0.24 -1.5
1,877,015 - Psyr_1671 0.24 +0.2
1,877,208 + Psyr_1671 0.47 -0.2
1,877,208 + Psyr_1671 0.47 +0.2
1,877,209 - Psyr_1671 0.47 -0.7
1,877,605 + +0.2
1,877,606 - +0.0
1,877,642 + +1.6
1,877,643 - +0.0
1,877,643 - -0.0
1,877,980 + +1.0
1,878,640 + Psyr_1672 0.42 -1.9
1,878,640 + Psyr_1672 0.42 -0.8
1,878,640 + Psyr_1672 0.42 +0.2
1,878,640 + Psyr_1672 0.42 -0.6
1,878,641 - Psyr_1672 0.42 -0.2
1,878,641 - Psyr_1672 0.42 -0.6
1,878,641 - Psyr_1672 0.42 -0.2
1,878,704 - Psyr_1672 0.46 +0.0
1,878,704 - Psyr_1672 0.46 +0.0
1,878,704 - Psyr_1672 0.46 -0.4
1,878,704 - Psyr_1672 0.46 -0.6
1,878,704 - Psyr_1672 0.46 -0.5
1,878,704 - Psyr_1672 0.46 -1.0
1,878,704 - Psyr_1672 0.46 +0.8
1,878,704 - Psyr_1672 0.46 +0.2
1,879,081 + Psyr_1672 0.71 +0.2
1,879,081 + Psyr_1672 0.71 -0.2
1,879,339 + Psyr_1672 0.88 +1.1
1,879,462 + -0.2
1,879,495 + +1.1
1,879,495 + -0.2
1,879,495 + +0.4
1,879,495 + -0.5
1,879,495 + +1.8
1,879,496 - +0.2
1,879,496 - +0.8
1,879,496 - +0.3
1,879,496 - -0.0
1,879,496 - +0.4
1,879,496 - -0.3
1,879,496 - -0.8
1,879,542 + -0.1
1,879,542 + -0.0
1,879,542 + +0.0
1,879,542 + -0.4
1,879,542 + -1.1
1,879,542 + -0.7
1,879,543 - +1.1
1,879,543 - +0.0
1,879,543 - -0.4
1,879,543 - +0.6
1,879,745 + -1.6
1,879,745 + -1.6
1,879,745 + -1.4
1,879,745 + -0.2
1,879,746 - +1.3
1,879,748 + -1.8
1,879,749 - +1.4
1,879,836 - +0.9
1,879,919 - -0.2
1,879,919 - +1.2
1,879,919 - +0.5
1,879,941 - +0.3
1,879,955 + +0.6
1,880,000 + -1.3
1,880,013 + +0.8
1,880,013 + +0.3
1,880,013 + -0.5
1,880,013 + +0.6
1,880,013 + -1.1
1,880,013 + -0.3
1,880,014 - +0.1
1,880,188 - Psyr_1673 0.10 -1.2
1,880,226 + Psyr_1673 0.14 -2.7
1,880,226 + Psyr_1673 0.14 +1.6
1,880,226 + Psyr_1673 0.14 -0.8
1,880,226 + Psyr_1673 0.14 -0.2
1,880,226 + -0.8
1,880,227 - Psyr_1673 0.14 -0.9
1,880,227 - Psyr_1673 0.14 +0.4
1,880,227 - Psyr_1673 0.14 +0.4
1,880,227 - Psyr_1673 0.14 +0.9
1,880,227 - Psyr_1673 0.14 -0.5
1,880,278 + Psyr_1673 0.19 +1.2
1,880,278 + Psyr_1673 0.19 -0.6
1,880,278 + Psyr_1673 0.19 -2.7
1,880,278 + Psyr_1673 0.19 +0.2
1,880,278 + Psyr_1673 0.19 -0.1
1,880,278 + Psyr_1673 0.19 -1.9
1,880,279 - Psyr_1673 0.19 -0.6
1,880,279 - Psyr_1673 0.19 -0.0
1,880,279 - Psyr_1673 0.19 -0.6
1,880,279 - Psyr_1673 0.19 -0.6
1,880,470 + Psyr_1673 0.37 -0.2
1,880,470 + Psyr_1673 0.37 +0.3
1,880,471 - Psyr_1673 0.37 -0.4
1,880,471 - Psyr_1673 0.37 +0.1

Or see this region's nucleotide sequence