Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1639

Experiment: KB with Carbenicillin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1638 and Psyr_1639 are separated by 669 nucleotidesPsyr_1639 and Psyr_1640 overlap by 11 nucleotidesPsyr_1640 and Psyr_1641 are separated by 24 nucleotides Psyr_1638: Psyr_1638 - RNAse E, at 1,842,286 to 1,845,648 _1638 Psyr_1639: Psyr_1639 - ribosomal large subunit pseudouridine synthase C, at 1,846,318 to 1,847,274 _1639 Psyr_1640: Psyr_1640 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 1,847,264 to 1,847,926 _1640 Psyr_1641: Psyr_1641 - Peptidase S49, SppA, at 1,847,951 to 1,848,949 _1641 Position (kb) 1846 1847 1848Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1846.132 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.278 kb on - strandat 1846.278 kb on - strandat 1846.306 kb on - strandat 1846.411 kb on + strandat 1846.412 kb on - strandat 1846.499 kb on - strand, within Psyr_1639at 1846.499 kb on - strand, within Psyr_1639at 1846.612 kb on + strand, within Psyr_1639at 1846.613 kb on - strand, within Psyr_1639at 1846.613 kb on - strand, within Psyr_1639at 1846.630 kb on - strand, within Psyr_1639at 1846.654 kb on - strand, within Psyr_1639at 1846.761 kb on + strand, within Psyr_1639at 1846.761 kb on + strand, within Psyr_1639at 1846.761 kb on + strand, within Psyr_1639at 1846.849 kb on + strand, within Psyr_1639at 1846.849 kb on + strand, within Psyr_1639at 1846.850 kb on - strand, within Psyr_1639at 1846.850 kb on - strand, within Psyr_1639at 1847.090 kb on + strand, within Psyr_1639at 1847.107 kb on + strand, within Psyr_1639at 1847.107 kb on + strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.211 kb on + strandat 1847.212 kb on - strandat 1847.212 kb on - strandat 1847.277 kb on - strandat 1847.486 kb on + strand, within Psyr_1640at 1847.487 kb on - strand, within Psyr_1640at 1847.487 kb on - strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.651 kb on + strand, within Psyr_1640at 1847.651 kb on + strand, within Psyr_1640at 1847.652 kb on - strand, within Psyr_1640at 1847.652 kb on - strand, within Psyr_1640at 1847.652 kb on - strandat 1848.019 kb on + strandat 1848.019 kb on + strandat 1848.020 kb on - strandat 1848.020 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
remove
1,846,132 - +1.2
1,846,265 - -2.8
1,846,265 - -0.2
1,846,265 - +0.4
1,846,265 - -2.9
1,846,265 - -1.2
1,846,265 - +1.8
1,846,278 - -0.5
1,846,278 - +0.2
1,846,306 - +0.8
1,846,411 + +0.5
1,846,412 - -0.8
1,846,499 - Psyr_1639 0.19 -0.8
1,846,499 - Psyr_1639 0.19 -1.8
1,846,612 + Psyr_1639 0.31 -0.2
1,846,613 - Psyr_1639 0.31 -0.4
1,846,613 - Psyr_1639 0.31 -1.2
1,846,630 - Psyr_1639 0.33 -0.3
1,846,654 - Psyr_1639 0.35 +0.1
1,846,761 + Psyr_1639 0.46 -0.6
1,846,761 + Psyr_1639 0.46 -1.2
1,846,761 + Psyr_1639 0.46 +0.5
1,846,849 + Psyr_1639 0.55 +0.8
1,846,849 + Psyr_1639 0.55 -0.6
1,846,850 - Psyr_1639 0.56 +0.3
1,846,850 - Psyr_1639 0.56 -0.2
1,847,090 + Psyr_1639 0.81 +0.8
1,847,107 + Psyr_1639 0.82 +0.8
1,847,107 + Psyr_1639 0.82 +0.5
1,847,108 - Psyr_1639 0.83 -0.4
1,847,108 - Psyr_1639 0.83 +0.7
1,847,108 - Psyr_1639 0.83 +0.4
1,847,173 + Psyr_1639 0.89 +3.1
1,847,173 + Psyr_1639 0.89 +0.5
1,847,173 + Psyr_1639 0.89 +0.3
1,847,173 + Psyr_1639 0.89 +0.5
1,847,173 + Psyr_1639 0.89 +0.4
1,847,174 - Psyr_1639 0.89 -1.8
1,847,174 - Psyr_1639 0.89 -1.9
1,847,174 - Psyr_1639 0.89 -1.9
1,847,174 - Psyr_1639 0.89 +0.4
1,847,174 - Psyr_1639 0.89 -0.9
1,847,174 - Psyr_1639 0.89 -2.3
1,847,174 - Psyr_1639 0.89 -0.6
1,847,174 - Psyr_1639 0.89 -0.5
1,847,174 - Psyr_1639 0.89 -0.6
1,847,174 - Psyr_1639 0.89 -0.8
1,847,174 - Psyr_1639 0.89 +0.4
1,847,174 - Psyr_1639 0.89 -3.1
1,847,174 - Psyr_1639 0.89 -0.7
1,847,174 - Psyr_1639 0.89 -0.3
1,847,174 - Psyr_1639 0.89 -1.4
1,847,174 - Psyr_1639 0.89 +0.8
1,847,211 + -1.1
1,847,212 - +0.2
1,847,212 - -0.0
1,847,277 - +0.8
1,847,486 + Psyr_1640 0.33 +2.8
1,847,487 - Psyr_1640 0.34 -0.4
1,847,487 - Psyr_1640 0.34 +0.0
1,847,498 + Psyr_1640 0.35 +1.2
1,847,498 + Psyr_1640 0.35 +0.8
1,847,498 + Psyr_1640 0.35 +1.4
1,847,498 + Psyr_1640 0.35 +0.4
1,847,498 + Psyr_1640 0.35 +1.6
1,847,498 + Psyr_1640 0.35 -0.9
1,847,498 + Psyr_1640 0.35 -0.9
1,847,498 + Psyr_1640 0.35 +1.2
1,847,498 + Psyr_1640 0.35 -1.8
1,847,498 + Psyr_1640 0.35 -1.5
1,847,498 + Psyr_1640 0.35 -0.7
1,847,498 + Psyr_1640 0.35 +0.5
1,847,498 + Psyr_1640 0.35 +0.2
1,847,498 + Psyr_1640 0.35 -0.5
1,847,498 + Psyr_1640 0.35 +0.8
1,847,499 - Psyr_1640 0.35 +0.2
1,847,499 - Psyr_1640 0.35 -0.9
1,847,499 - Psyr_1640 0.35 -0.7
1,847,499 - Psyr_1640 0.35 +0.8
1,847,499 - Psyr_1640 0.35 -2.4
1,847,499 - Psyr_1640 0.35 +0.5
1,847,651 + Psyr_1640 0.58 -0.9
1,847,651 + Psyr_1640 0.58 +0.8
1,847,652 - Psyr_1640 0.59 -1.5
1,847,652 - Psyr_1640 0.59 -0.2
1,847,652 - -0.8
1,848,019 + +1.0
1,848,019 + +0.6
1,848,020 - -0.1
1,848,020 - -0.7

Or see this region's nucleotide sequence