Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1421

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1420 and Psyr_1421 are separated by 125 nucleotidesPsyr_1421 and Psyr_1422 overlap by 4 nucleotides Psyr_1420: Psyr_1420 - conserved hypothetical protein, at 1,605,214 to 1,607,838 _1420 Psyr_1421: Psyr_1421 - Phage integrase, at 1,607,964 to 1,609,370 _1421 Psyr_1422: Psyr_1422 - Protein of unknown function DUF1528:Relaxase, at 1,609,367 to 1,611,271 _1422 Position (kb) 1607 1608 1609 1610Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1606.965 kb on - strand, within Psyr_1420at 1606.967 kb on - strand, within Psyr_1420at 1607.051 kb on + strand, within Psyr_1420at 1607.051 kb on + strand, within Psyr_1420at 1607.051 kb on + strand, within Psyr_1420at 1607.051 kb on + strand, within Psyr_1420at 1607.052 kb on - strand, within Psyr_1420at 1607.052 kb on - strand, within Psyr_1420at 1607.052 kb on - strand, within Psyr_1420at 1607.052 kb on - strand, within Psyr_1420at 1607.052 kb on - strand, within Psyr_1420at 1607.080 kb on + strand, within Psyr_1420at 1607.091 kb on - strand, within Psyr_1420at 1607.176 kb on - strand, within Psyr_1420at 1607.223 kb on + strand, within Psyr_1420at 1607.223 kb on + strand, within Psyr_1420at 1607.223 kb on + strand, within Psyr_1420at 1607.223 kb on + strand, within Psyr_1420at 1607.224 kb on - strand, within Psyr_1420at 1607.224 kb on - strand, within Psyr_1420at 1607.224 kb on - strand, within Psyr_1420at 1607.225 kb on + strand, within Psyr_1420at 1607.225 kb on + strand, within Psyr_1420at 1607.225 kb on + strand, within Psyr_1420at 1607.226 kb on - strand, within Psyr_1420at 1607.226 kb on - strand, within Psyr_1420at 1607.255 kb on + strand, within Psyr_1420at 1607.255 kb on + strand, within Psyr_1420at 1607.255 kb on + strand, within Psyr_1420at 1607.255 kb on + strand, within Psyr_1420at 1607.256 kb on - strand, within Psyr_1420at 1607.256 kb on - strand, within Psyr_1420at 1607.256 kb on - strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.277 kb on + strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.278 kb on - strand, within Psyr_1420at 1607.353 kb on + strand, within Psyr_1420at 1607.419 kb on + strand, within Psyr_1420at 1607.419 kb on + strand, within Psyr_1420at 1607.420 kb on - strand, within Psyr_1420at 1607.420 kb on - strand, within Psyr_1420at 1607.420 kb on - strand, within Psyr_1420at 1607.420 kb on - strand, within Psyr_1420at 1607.420 kb on - strand, within Psyr_1420at 1607.420 kb on - strand, within Psyr_1420at 1607.511 kb on + strand, within Psyr_1420at 1607.512 kb on - strand, within Psyr_1420at 1607.589 kb on + strandat 1607.595 kb on + strandat 1607.595 kb on + strandat 1607.595 kb on + strandat 1607.595 kb on + strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.596 kb on - strandat 1607.601 kb on + strandat 1607.602 kb on - strandat 1607.602 kb on - strandat 1607.602 kb on - strandat 1607.664 kb on - strandat 1607.684 kb on + strandat 1607.684 kb on + strandat 1607.684 kb on + strandat 1607.685 kb on - strandat 1607.685 kb on - strandat 1607.685 kb on - strandat 1607.685 kb on - strandat 1607.826 kb on - strandat 1607.901 kb on - strandat 1607.940 kb on + strandat 1607.941 kb on - strandat 1607.944 kb on + strandat 1607.944 kb on + strandat 1607.945 kb on - strandat 1607.945 kb on - strandat 1607.955 kb on + strandat 1607.955 kb on + strandat 1607.955 kb on + strandat 1607.955 kb on + strandat 1607.956 kb on - strandat 1607.956 kb on - strandat 1607.956 kb on - strandat 1607.959 kb on + strandat 1607.959 kb on + strandat 1607.959 kb on + strandat 1607.960 kb on - strandat 1607.960 kb on - strandat 1607.960 kb on - strandat 1607.960 kb on - strandat 1607.960 kb on - strandat 1607.960 kb on - strandat 1607.960 kb on - strandat 1608.016 kb on - strandat 1608.016 kb on - strandat 1608.146 kb on + strand, within Psyr_1421at 1608.146 kb on + strand, within Psyr_1421at 1608.146 kb on + strand, within Psyr_1421at 1608.269 kb on + strand, within Psyr_1421at 1608.269 kb on + strand, within Psyr_1421at 1608.270 kb on - strand, within Psyr_1421at 1608.270 kb on - strand, within Psyr_1421at 1608.424 kb on + strand, within Psyr_1421at 1608.424 kb on + strand, within Psyr_1421at 1608.424 kb on + strand, within Psyr_1421at 1608.424 kb on + strand, within Psyr_1421at 1608.424 kb on + strand, within Psyr_1421at 1608.762 kb on - strand, within Psyr_1421at 1608.772 kb on - strand, within Psyr_1421at 1608.916 kb on + strand, within Psyr_1421at 1608.959 kb on + strand, within Psyr_1421at 1609.017 kb on - strand, within Psyr_1421at 1609.017 kb on - strand, within Psyr_1421at 1609.133 kb on - strand, within Psyr_1421at 1609.133 kb on - strand, within Psyr_1421at 1609.138 kb on + strand, within Psyr_1421at 1609.138 kb on + strand, within Psyr_1421at 1609.138 kb on + strand, within Psyr_1421at 1609.138 kb on + strand, within Psyr_1421at 1609.138 kb on + strand, within Psyr_1421at 1609.138 kb on + strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.139 kb on - strand, within Psyr_1421at 1609.163 kb on - strand, within Psyr_1421at 1609.163 kb on - strand, within Psyr_1421at 1609.616 kb on + strand, within Psyr_1422at 1609.617 kb on - strand, within Psyr_1422at 1609.617 kb on - strand, within Psyr_1422at 1609.780 kb on + strand, within Psyr_1422at 1609.874 kb on - strand, within Psyr_1422at 1610.026 kb on + strand, within Psyr_1422at 1610.026 kb on + strand, within Psyr_1422at 1610.026 kb on + strand, within Psyr_1422

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,606,965 - Psyr_1420 0.67 -0.7
1,606,967 - Psyr_1420 0.67 -0.5
1,607,051 + Psyr_1420 0.70 -0.2
1,607,051 + Psyr_1420 0.70 +1.0
1,607,051 + Psyr_1420 0.70 +1.9
1,607,051 + Psyr_1420 0.70 +0.5
1,607,052 - Psyr_1420 0.70 +1.4
1,607,052 - Psyr_1420 0.70 +0.6
1,607,052 - Psyr_1420 0.70 +0.6
1,607,052 - Psyr_1420 0.70 -0.1
1,607,052 - Psyr_1420 0.70 -0.4
1,607,080 + Psyr_1420 0.71 +0.6
1,607,091 - Psyr_1420 0.72 -0.6
1,607,176 - Psyr_1420 0.75 -0.1
1,607,223 + Psyr_1420 0.77 -0.3
1,607,223 + Psyr_1420 0.77 -1.1
1,607,223 + Psyr_1420 0.77 +0.5
1,607,223 + Psyr_1420 0.77 +0.9
1,607,224 - Psyr_1420 0.77 -0.6
1,607,224 - Psyr_1420 0.77 -0.1
1,607,224 - Psyr_1420 0.77 +0.1
1,607,225 + Psyr_1420 0.77 -1.3
1,607,225 + Psyr_1420 0.77 +0.0
1,607,225 + Psyr_1420 0.77 +1.1
1,607,226 - Psyr_1420 0.77 +0.3
1,607,226 - Psyr_1420 0.77 -0.1
1,607,255 + Psyr_1420 0.78 -0.5
1,607,255 + Psyr_1420 0.78 +0.3
1,607,255 + Psyr_1420 0.78 +0.4
1,607,255 + Psyr_1420 0.78 -2.3
1,607,256 - Psyr_1420 0.78 +2.0
1,607,256 - Psyr_1420 0.78 +0.0
1,607,256 - Psyr_1420 0.78 -2.5
1,607,277 + Psyr_1420 0.79 -0.5
1,607,277 + Psyr_1420 0.79 -0.1
1,607,277 + Psyr_1420 0.79 -0.7
1,607,277 + Psyr_1420 0.79 +1.1
1,607,277 + Psyr_1420 0.79 +1.2
1,607,277 + Psyr_1420 0.79 +0.3
1,607,277 + Psyr_1420 0.79 -1.4
1,607,277 + Psyr_1420 0.79 -1.1
1,607,277 + Psyr_1420 0.79 +0.3
1,607,277 + Psyr_1420 0.79 -0.7
1,607,277 + Psyr_1420 0.79 +0.0
1,607,277 + Psyr_1420 0.79 -0.7
1,607,277 + Psyr_1420 0.79 -0.1
1,607,277 + Psyr_1420 0.79 -0.5
1,607,277 + Psyr_1420 0.79 -0.7
1,607,278 - Psyr_1420 0.79 -1.3
1,607,278 - Psyr_1420 0.79 +1.4
1,607,278 - Psyr_1420 0.79 -0.1
1,607,278 - Psyr_1420 0.79 -1.1
1,607,278 - Psyr_1420 0.79 -0.4
1,607,278 - Psyr_1420 0.79 +0.9
1,607,278 - Psyr_1420 0.79 +1.9
1,607,278 - Psyr_1420 0.79 +0.7
1,607,278 - Psyr_1420 0.79 +0.9
1,607,278 - Psyr_1420 0.79 -1.5
1,607,278 - Psyr_1420 0.79 +0.1
1,607,278 - Psyr_1420 0.79 -2.0
1,607,278 - Psyr_1420 0.79 -0.7
1,607,278 - Psyr_1420 0.79 -0.7
1,607,278 - Psyr_1420 0.79 -0.8
1,607,278 - Psyr_1420 0.79 -1.1
1,607,278 - Psyr_1420 0.79 +0.1
1,607,353 + Psyr_1420 0.81 +0.0
1,607,419 + Psyr_1420 0.84 -1.6
1,607,419 + Psyr_1420 0.84 -0.4
1,607,420 - Psyr_1420 0.84 +1.1
1,607,420 - Psyr_1420 0.84 -2.5
1,607,420 - Psyr_1420 0.84 -0.0
1,607,420 - Psyr_1420 0.84 -0.1
1,607,420 - Psyr_1420 0.84 +0.9
1,607,420 - Psyr_1420 0.84 -0.9
1,607,511 + Psyr_1420 0.88 +0.5
1,607,512 - Psyr_1420 0.88 -1.0
1,607,589 + +0.4
1,607,595 + -1.3
1,607,595 + -0.7
1,607,595 + +0.9
1,607,595 + +0.2
1,607,596 - -0.1
1,607,596 - +0.3
1,607,596 - +1.2
1,607,596 - -0.7
1,607,596 - +0.4
1,607,596 - -0.5
1,607,596 - +0.0
1,607,596 - -1.5
1,607,596 - -1.5
1,607,596 - +1.3
1,607,596 - +1.5
1,607,601 + +0.9
1,607,602 - -0.1
1,607,602 - +0.0
1,607,602 - +0.8
1,607,664 - +0.7
1,607,684 + -0.3
1,607,684 + -0.1
1,607,684 + +1.9
1,607,685 - +0.4
1,607,685 - -0.7
1,607,685 - +1.9
1,607,685 - +0.9
1,607,826 - +1.6
1,607,901 - +0.5
1,607,940 + +0.1
1,607,941 - -0.3
1,607,944 + -1.4
1,607,944 + -0.1
1,607,945 - -0.4
1,607,945 - -1.1
1,607,955 + +0.1
1,607,955 + -0.1
1,607,955 + -0.9
1,607,955 + +0.9
1,607,956 - +0.2
1,607,956 - -0.5
1,607,956 - -1.6
1,607,959 + -0.7
1,607,959 + +0.0
1,607,959 + -0.9
1,607,960 - +0.9
1,607,960 - +1.2
1,607,960 - -0.7
1,607,960 - -1.1
1,607,960 - +1.2
1,607,960 - -0.1
1,607,960 - +0.9
1,608,016 - +0.1
1,608,016 - +2.7
1,608,146 + Psyr_1421 0.13 +0.8
1,608,146 + Psyr_1421 0.13 -0.1
1,608,146 + Psyr_1421 0.13 +1.9
1,608,269 + Psyr_1421 0.22 -3.3
1,608,269 + Psyr_1421 0.22 +1.6
1,608,270 - Psyr_1421 0.22 +1.3
1,608,270 - Psyr_1421 0.22 +0.9
1,608,424 + Psyr_1421 0.33 +0.6
1,608,424 + Psyr_1421 0.33 +2.0
1,608,424 + Psyr_1421 0.33 +0.9
1,608,424 + Psyr_1421 0.33 +1.1
1,608,424 + Psyr_1421 0.33 +0.4
1,608,762 - Psyr_1421 0.57 +0.9
1,608,772 - Psyr_1421 0.57 -0.1
1,608,916 + Psyr_1421 0.68 -2.1
1,608,959 + Psyr_1421 0.71 -0.1
1,609,017 - Psyr_1421 0.75 +0.6
1,609,017 - Psyr_1421 0.75 -0.5
1,609,133 - Psyr_1421 0.83 +0.3
1,609,133 - Psyr_1421 0.83 +0.4
1,609,138 + Psyr_1421 0.83 -0.1
1,609,138 + Psyr_1421 0.83 +0.3
1,609,138 + Psyr_1421 0.83 +1.4
1,609,138 + Psyr_1421 0.83 -0.0
1,609,138 + Psyr_1421 0.83 +1.3
1,609,138 + Psyr_1421 0.83 -1.1
1,609,139 - Psyr_1421 0.84 +0.9
1,609,139 - Psyr_1421 0.84 +0.7
1,609,139 - Psyr_1421 0.84 +0.1
1,609,139 - Psyr_1421 0.84 -0.4
1,609,139 - Psyr_1421 0.84 +0.2
1,609,139 - Psyr_1421 0.84 -0.7
1,609,139 - Psyr_1421 0.84 -0.7
1,609,139 - Psyr_1421 0.84 +0.4
1,609,163 - Psyr_1421 0.85 -0.2
1,609,163 - Psyr_1421 0.85 +0.4
1,609,616 + Psyr_1422 0.13 -2.7
1,609,617 - Psyr_1422 0.13 -0.7
1,609,617 - Psyr_1422 0.13 +0.9
1,609,780 + Psyr_1422 0.22 +0.3
1,609,874 - Psyr_1422 0.27 +1.4
1,610,026 + Psyr_1422 0.35 +0.2
1,610,026 + Psyr_1422 0.35 -3.4
1,610,026 + Psyr_1422 0.35 +0.5

Or see this region's nucleotide sequence