Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1395

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1394 and Psyr_1395 are separated by 85 nucleotidesPsyr_1395 and Psyr_1396 overlap by 1 nucleotides Psyr_1394: Psyr_1394 - potassium transporter, at 1,575,675 to 1,577,570 _1394 Psyr_1395: Psyr_1395 - virulence, at 1,577,656 to 1,578,990 _1395 Psyr_1396: Psyr_1396 - Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472, at 1,578,990 to 1,581,632 _1396 Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1576.659 kb on + strand, within Psyr_1394at 1576.659 kb on + strand, within Psyr_1394at 1576.659 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.713 kb on + strand, within Psyr_1394at 1576.714 kb on - strand, within Psyr_1394at 1576.714 kb on - strand, within Psyr_1394at 1576.714 kb on - strand, within Psyr_1394at 1576.714 kb on - strand, within Psyr_1394at 1576.714 kb on - strand, within Psyr_1394at 1577.004 kb on - strand, within Psyr_1394at 1577.180 kb on + strand, within Psyr_1394at 1577.181 kb on - strand, within Psyr_1394at 1577.181 kb on - strand, within Psyr_1394at 1577.235 kb on + strand, within Psyr_1394at 1577.235 kb on + strand, within Psyr_1394at 1577.235 kb on + strand, within Psyr_1394at 1577.235 kb on + strand, within Psyr_1394at 1577.235 kb on + strand, within Psyr_1394at 1577.235 kb on + strand, within Psyr_1394at 1577.236 kb on - strand, within Psyr_1394at 1577.236 kb on - strand, within Psyr_1394at 1577.236 kb on - strand, within Psyr_1394at 1577.236 kb on - strand, within Psyr_1394at 1577.301 kb on + strand, within Psyr_1394at 1577.406 kb on + strandat 1577.406 kb on + strandat 1577.406 kb on + strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.407 kb on - strandat 1577.548 kb on + strandat 1577.549 kb on - strandat 1577.549 kb on - strandat 1577.549 kb on - strandat 1577.549 kb on - strandat 1577.552 kb on + strandat 1577.568 kb on + strandat 1577.568 kb on + strandat 1577.568 kb on + strandat 1577.568 kb on + strandat 1577.568 kb on + strandat 1577.568 kb on + strandat 1577.568 kb on + strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.569 kb on - strandat 1577.993 kb on + strand, within Psyr_1395at 1577.993 kb on + strand, within Psyr_1395at 1577.993 kb on + strand, within Psyr_1395at 1577.993 kb on + strand, within Psyr_1395at 1577.993 kb on + strand, within Psyr_1395at 1577.993 kb on + strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1577.994 kb on - strand, within Psyr_1395at 1578.128 kb on + strand, within Psyr_1395at 1578.128 kb on + strand, within Psyr_1395at 1578.129 kb on - strand, within Psyr_1395at 1578.129 kb on - strand, within Psyr_1395at 1578.132 kb on - strand, within Psyr_1395at 1578.139 kb on + strand, within Psyr_1395at 1578.139 kb on + strand, within Psyr_1395at 1578.139 kb on + strand, within Psyr_1395at 1578.139 kb on + strand, within Psyr_1395at 1578.140 kb on - strand, within Psyr_1395at 1578.140 kb on - strand, within Psyr_1395at 1578.631 kb on + strand, within Psyr_1395at 1578.632 kb on - strand, within Psyr_1395at 1578.632 kb on - strand, within Psyr_1395at 1578.842 kb on - strand, within Psyr_1395at 1578.932 kb on - strandat 1578.937 kb on + strandat 1578.938 kb on - strandat 1579.082 kb on + strandat 1579.082 kb on + strandat 1579.083 kb on - strandat 1579.083 kb on - strandat 1579.083 kb on - strandat 1579.084 kb on + strandat 1579.085 kb on - strandat 1579.085 kb on - strandat 1579.144 kb on + strandat 1579.144 kb on + strandat 1579.144 kb on + strandat 1579.144 kb on + strandat 1579.145 kb on - strandat 1579.145 kb on - strandat 1579.145 kb on - strandat 1579.145 kb on - strandat 1579.270 kb on + strand, within Psyr_1396at 1579.270 kb on + strand, within Psyr_1396at 1579.270 kb on + strand, within Psyr_1396at 1579.271 kb on - strand, within Psyr_1396at 1579.432 kb on + strand, within Psyr_1396at 1579.432 kb on + strand, within Psyr_1396at 1579.432 kb on + strand, within Psyr_1396at 1579.432 kb on + strand, within Psyr_1396at 1579.432 kb on + strand, within Psyr_1396at 1579.433 kb on - strand, within Psyr_1396at 1579.433 kb on - strand, within Psyr_1396at 1579.433 kb on - strand, within Psyr_1396at 1579.552 kb on + strand, within Psyr_1396at 1579.553 kb on - strand, within Psyr_1396at 1579.553 kb on - strand, within Psyr_1396at 1579.553 kb on - strand, within Psyr_1396at 1579.597 kb on + strand, within Psyr_1396at 1579.597 kb on + strand, within Psyr_1396at 1579.597 kb on + strand, within Psyr_1396at 1579.597 kb on + strand, within Psyr_1396at 1579.597 kb on + strand, within Psyr_1396at 1579.702 kb on + strand, within Psyr_1396at 1579.702 kb on + strand, within Psyr_1396at 1579.702 kb on + strand, within Psyr_1396at 1579.702 kb on + strand, within Psyr_1396at 1579.702 kb on + strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.703 kb on - strand, within Psyr_1396at 1579.725 kb on + strand, within Psyr_1396at 1579.725 kb on + strand, within Psyr_1396at 1579.725 kb on + strand, within Psyr_1396at 1579.725 kb on + strand, within Psyr_1396at 1579.725 kb on + strand, within Psyr_1396at 1579.725 kb on + strand, within Psyr_1396at 1579.726 kb on - strand, within Psyr_1396at 1579.726 kb on - strand, within Psyr_1396at 1579.726 kb on - strand, within Psyr_1396at 1579.726 kb on - strand, within Psyr_1396at 1579.733 kb on - strand, within Psyr_1396at 1579.733 kb on - strand, within Psyr_1396at 1579.733 kb on - strand, within Psyr_1396at 1579.823 kb on - strand, within Psyr_1396at 1579.855 kb on + strand, within Psyr_1396at 1579.855 kb on + strand, within Psyr_1396at 1579.855 kb on + strand, within Psyr_1396at 1579.855 kb on + strand, within Psyr_1396at 1579.855 kb on + strand, within Psyr_1396at 1579.855 kb on + strand, within Psyr_1396at 1579.856 kb on - strand, within Psyr_1396at 1579.856 kb on - strand, within Psyr_1396

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,576,659 + Psyr_1394 0.52 -0.5
1,576,659 + Psyr_1394 0.52 +0.3
1,576,659 + Psyr_1394 0.52 +0.4
1,576,713 + Psyr_1394 0.55 -0.2
1,576,713 + Psyr_1394 0.55 +0.5
1,576,713 + Psyr_1394 0.55 +0.5
1,576,713 + Psyr_1394 0.55 +0.3
1,576,713 + Psyr_1394 0.55 +1.1
1,576,713 + Psyr_1394 0.55 +0.8
1,576,713 + Psyr_1394 0.55 +0.2
1,576,714 - Psyr_1394 0.55 +0.4
1,576,714 - Psyr_1394 0.55 -0.6
1,576,714 - Psyr_1394 0.55 -0.6
1,576,714 - Psyr_1394 0.55 +0.3
1,576,714 - Psyr_1394 0.55 -0.0
1,577,004 - Psyr_1394 0.70 +1.5
1,577,180 + Psyr_1394 0.79 +0.1
1,577,181 - Psyr_1394 0.79 -0.3
1,577,181 - Psyr_1394 0.79 +0.1
1,577,235 + Psyr_1394 0.82 +1.5
1,577,235 + Psyr_1394 0.82 -0.5
1,577,235 + Psyr_1394 0.82 +1.3
1,577,235 + Psyr_1394 0.82 +0.3
1,577,235 + Psyr_1394 0.82 -0.7
1,577,235 + Psyr_1394 0.82 -2.6
1,577,236 - Psyr_1394 0.82 -2.7
1,577,236 - Psyr_1394 0.82 +0.0
1,577,236 - Psyr_1394 0.82 -0.7
1,577,236 - Psyr_1394 0.82 -0.7
1,577,301 + Psyr_1394 0.86 -0.2
1,577,406 + -1.5
1,577,406 + +0.0
1,577,406 + -0.2
1,577,407 - +0.8
1,577,407 - +1.6
1,577,407 - +0.3
1,577,407 - -0.4
1,577,407 - -1.0
1,577,407 - +0.4
1,577,407 - +1.5
1,577,407 - +0.2
1,577,548 + +1.6
1,577,549 - +0.6
1,577,549 - -1.6
1,577,549 - +1.0
1,577,549 - +1.1
1,577,552 + -1.5
1,577,568 + +0.2
1,577,568 + -0.2
1,577,568 + +1.3
1,577,568 + -0.0
1,577,568 + -1.0
1,577,568 + +1.8
1,577,568 + +0.3
1,577,569 - +1.8
1,577,569 - -0.6
1,577,569 - +1.4
1,577,569 - +0.4
1,577,569 - +1.2
1,577,569 - +0.8
1,577,569 - -2.0
1,577,569 - -2.5
1,577,569 - -1.6
1,577,993 + Psyr_1395 0.25 -1.5
1,577,993 + Psyr_1395 0.25 -1.7
1,577,993 + Psyr_1395 0.25 -0.1
1,577,993 + Psyr_1395 0.25 +1.5
1,577,993 + Psyr_1395 0.25 -1.7
1,577,993 + Psyr_1395 0.25 -1.2
1,577,994 - Psyr_1395 0.25 -0.7
1,577,994 - Psyr_1395 0.25 +2.4
1,577,994 - Psyr_1395 0.25 +1.9
1,577,994 - Psyr_1395 0.25 +0.5
1,577,994 - Psyr_1395 0.25 +1.3
1,577,994 - Psyr_1395 0.25 +1.4
1,577,994 - Psyr_1395 0.25 +0.6
1,577,994 - Psyr_1395 0.25 +1.4
1,577,994 - Psyr_1395 0.25 -1.0
1,577,994 - Psyr_1395 0.25 +1.4
1,578,128 + Psyr_1395 0.35 +0.8
1,578,128 + Psyr_1395 0.35 -0.2
1,578,129 - Psyr_1395 0.35 +1.2
1,578,129 - Psyr_1395 0.35 +1.1
1,578,132 - Psyr_1395 0.36 +0.0
1,578,139 + Psyr_1395 0.36 -0.1
1,578,139 + Psyr_1395 0.36 +1.3
1,578,139 + Psyr_1395 0.36 -0.5
1,578,139 + Psyr_1395 0.36 +1.0
1,578,140 - Psyr_1395 0.36 -2.7
1,578,140 - Psyr_1395 0.36 +1.3
1,578,631 + Psyr_1395 0.73 +1.6
1,578,632 - Psyr_1395 0.73 +0.3
1,578,632 - Psyr_1395 0.73 +2.4
1,578,842 - Psyr_1395 0.89 -1.2
1,578,932 - +0.8
1,578,937 + -0.7
1,578,938 - -0.6
1,579,082 + -0.5
1,579,082 + -1.5
1,579,083 - -0.3
1,579,083 - +0.0
1,579,083 - +0.8
1,579,084 + +2.4
1,579,085 - -0.2
1,579,085 - -0.6
1,579,144 + -0.6
1,579,144 + -0.6
1,579,144 + -0.1
1,579,144 + -1.0
1,579,145 - +0.8
1,579,145 - +0.0
1,579,145 - -1.2
1,579,145 - -1.4
1,579,270 + Psyr_1396 0.11 +0.3
1,579,270 + Psyr_1396 0.11 -0.5
1,579,270 + Psyr_1396 0.11 +0.3
1,579,271 - Psyr_1396 0.11 -2.0
1,579,432 + Psyr_1396 0.17 +1.9
1,579,432 + Psyr_1396 0.17 +0.3
1,579,432 + Psyr_1396 0.17 -0.8
1,579,432 + Psyr_1396 0.17 +0.4
1,579,432 + Psyr_1396 0.17 -1.7
1,579,433 - Psyr_1396 0.17 +0.5
1,579,433 - Psyr_1396 0.17 +1.4
1,579,433 - Psyr_1396 0.17 +1.2
1,579,552 + Psyr_1396 0.21 +1.9
1,579,553 - Psyr_1396 0.21 -0.5
1,579,553 - Psyr_1396 0.21 -0.3
1,579,553 - Psyr_1396 0.21 -0.4
1,579,597 + Psyr_1396 0.23 +0.4
1,579,597 + Psyr_1396 0.23 -0.0
1,579,597 + Psyr_1396 0.23 +2.3
1,579,597 + Psyr_1396 0.23 -2.5
1,579,597 + Psyr_1396 0.23 +0.7
1,579,702 + Psyr_1396 0.27 +0.3
1,579,702 + Psyr_1396 0.27 -0.4
1,579,702 + Psyr_1396 0.27 +3.7
1,579,702 + Psyr_1396 0.27 -1.0
1,579,702 + Psyr_1396 0.27 -0.0
1,579,703 - Psyr_1396 0.27 -0.9
1,579,703 - Psyr_1396 0.27 +0.9
1,579,703 - Psyr_1396 0.27 -0.5
1,579,703 - Psyr_1396 0.27 -0.4
1,579,703 - Psyr_1396 0.27 +0.7
1,579,703 - Psyr_1396 0.27 +0.9
1,579,703 - Psyr_1396 0.27 -0.1
1,579,703 - Psyr_1396 0.27 +0.6
1,579,703 - Psyr_1396 0.27 -0.6
1,579,725 + Psyr_1396 0.28 +0.1
1,579,725 + Psyr_1396 0.28 +0.3
1,579,725 + Psyr_1396 0.28 +0.1
1,579,725 + Psyr_1396 0.28 -0.1
1,579,725 + Psyr_1396 0.28 +1.4
1,579,725 + Psyr_1396 0.28 +0.1
1,579,726 - Psyr_1396 0.28 -0.5
1,579,726 - Psyr_1396 0.28 +0.5
1,579,726 - Psyr_1396 0.28 -0.5
1,579,726 - Psyr_1396 0.28 -0.2
1,579,733 - Psyr_1396 0.28 -0.1
1,579,733 - Psyr_1396 0.28 -0.9
1,579,733 - Psyr_1396 0.28 +0.5
1,579,823 - Psyr_1396 0.32 -1.1
1,579,855 + Psyr_1396 0.33 -1.0
1,579,855 + Psyr_1396 0.33 +0.3
1,579,855 + Psyr_1396 0.33 -0.7
1,579,855 + Psyr_1396 0.33 +0.4
1,579,855 + Psyr_1396 0.33 -0.2
1,579,855 + Psyr_1396 0.33 -0.5
1,579,856 - Psyr_1396 0.33 -1.1
1,579,856 - Psyr_1396 0.33 +0.6

Or see this region's nucleotide sequence