Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1386

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1384 and Psyr_1385 are separated by 83 nucleotidesPsyr_1385 and Psyr_1386 are separated by 18 nucleotidesPsyr_1386 and Psyr_1387 are separated by 123 nucleotidesPsyr_1387 and Psyr_1388 are separated by 96 nucleotides Psyr_1384: Psyr_1384 - regulatory protein, LuxR:Response regulator receiver, at 1,566,964 to 1,567,611 _1384 Psyr_1385: Psyr_1385 - diacylglycerol kinase, at 1,567,695 to 1,568,060 _1385 Psyr_1386: Psyr_1386 - transcriptional regulator, LysR family, at 1,568,079 to 1,569,005 _1386 Psyr_1387: Psyr_1387 - Ferredoxin--NADP(+) reductase, at 1,569,129 to 1,569,908 _1387 Psyr_1388: Psyr_1388 - Protein of unknown function UPF0066, at 1,570,005 to 1,570,697 _1388 Position (kb) 1568 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2at 1567.580 kb on + strandat 1567.581 kb on - strandat 1567.651 kb on + strandat 1567.652 kb on - strandat 1567.652 kb on - strandat 1567.660 kb on - strandat 1567.694 kb on + strandat 1567.694 kb on + strandat 1567.694 kb on + strandat 1567.694 kb on + strandat 1567.694 kb on + strandat 1567.694 kb on + strandat 1567.695 kb on - strandat 1567.695 kb on - strandat 1567.695 kb on - strandat 1567.695 kb on - strandat 1567.695 kb on - strandat 1567.695 kb on - strandat 1567.695 kb on - strandat 1567.730 kb on + strandat 1567.730 kb on + strandat 1567.731 kb on - strandat 1567.736 kb on + strand, within Psyr_1385at 1567.737 kb on - strand, within Psyr_1385at 1568.070 kb on + strandat 1568.070 kb on + strandat 1568.083 kb on + strandat 1568.083 kb on + strandat 1568.083 kb on + strandat 1568.084 kb on - strandat 1568.084 kb on - strandat 1568.176 kb on + strand, within Psyr_1386at 1568.176 kb on + strand, within Psyr_1386at 1568.176 kb on + strand, within Psyr_1386at 1568.177 kb on - strand, within Psyr_1386at 1568.177 kb on - strand, within Psyr_1386at 1568.200 kb on + strand, within Psyr_1386at 1568.200 kb on + strand, within Psyr_1386at 1568.200 kb on + strand, within Psyr_1386at 1568.201 kb on - strand, within Psyr_1386at 1568.430 kb on + strand, within Psyr_1386at 1568.431 kb on - strand, within Psyr_1386at 1568.431 kb on - strand, within Psyr_1386at 1568.464 kb on - strand, within Psyr_1386at 1568.464 kb on - strand, within Psyr_1386at 1568.590 kb on + strand, within Psyr_1386at 1568.590 kb on + strand, within Psyr_1386at 1568.613 kb on - strand, within Psyr_1386at 1568.696 kb on - strand, within Psyr_1386at 1568.696 kb on - strand, within Psyr_1386at 1568.859 kb on + strand, within Psyr_1386at 1568.859 kb on + strand, within Psyr_1386at 1568.859 kb on + strand, within Psyr_1386at 1568.859 kb on + strand, within Psyr_1386at 1568.976 kb on + strandat 1568.976 kb on + strandat 1568.976 kb on + strandat 1568.996 kb on + strandat 1569.906 kb on + strandat 1569.906 kb on + strandat 1569.907 kb on - strandat 1569.907 kb on - strandat 1569.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,567,580 + -0.4
1,567,581 - -1.2
1,567,651 + -1.2
1,567,652 - +0.4
1,567,652 - -0.2
1,567,660 - +1.2
1,567,694 + -0.7
1,567,694 + +0.3
1,567,694 + -0.0
1,567,694 + -0.4
1,567,694 + +0.7
1,567,694 + +0.1
1,567,695 - -0.5
1,567,695 - +0.3
1,567,695 - -1.0
1,567,695 - -2.2
1,567,695 - -1.2
1,567,695 - +1.8
1,567,695 - +1.0
1,567,730 + +1.4
1,567,730 + -1.5
1,567,731 - +0.0
1,567,736 + Psyr_1385 0.11 -0.2
1,567,737 - Psyr_1385 0.11 +0.8
1,568,070 + +0.6
1,568,070 + -0.9
1,568,083 + +0.5
1,568,083 + +0.7
1,568,083 + +0.8
1,568,084 - +0.3
1,568,084 - -1.2
1,568,176 + Psyr_1386 0.10 +1.2
1,568,176 + Psyr_1386 0.10 -0.0
1,568,176 + Psyr_1386 0.10 -0.6
1,568,177 - Psyr_1386 0.11 -1.5
1,568,177 - Psyr_1386 0.11 -1.2
1,568,200 + Psyr_1386 0.13 -1.3
1,568,200 + Psyr_1386 0.13 +0.2
1,568,200 + Psyr_1386 0.13 -0.1
1,568,201 - Psyr_1386 0.13 -0.7
1,568,430 + Psyr_1386 0.38 -0.7
1,568,431 - Psyr_1386 0.38 -0.3
1,568,431 - Psyr_1386 0.38 -1.3
1,568,464 - Psyr_1386 0.42 -0.7
1,568,464 - Psyr_1386 0.42 -0.6
1,568,590 + Psyr_1386 0.55 +1.1
1,568,590 + Psyr_1386 0.55 -0.8
1,568,613 - Psyr_1386 0.58 +0.8
1,568,696 - Psyr_1386 0.67 -2.5
1,568,696 - Psyr_1386 0.67 +1.2
1,568,859 + Psyr_1386 0.84 -0.3
1,568,859 + Psyr_1386 0.84 -0.2
1,568,859 + Psyr_1386 0.84 +0.1
1,568,859 + Psyr_1386 0.84 -0.6
1,568,976 + +0.1
1,568,976 + +0.8
1,568,976 + +0.3
1,568,996 + +0.6
1,569,906 + -0.0
1,569,906 + +0.1
1,569,907 - +0.0
1,569,907 - +0.3
1,569,907 - +0.1

Or see this region's nucleotide sequence