Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1292

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1291 and Psyr_1292 are separated by 120 nucleotidesPsyr_1292 and Psyr_1293 are separated by 32 nucleotides Psyr_1291: Psyr_1291 - L-threonine synthase, at 1,456,278 to 1,457,687 _1291 Psyr_1292: Psyr_1292 - multi-sensor hybrid histidine kinase, at 1,457,808 to 1,461,437 _1292 Psyr_1293: Psyr_1293 - EAL:Response regulator receiver, at 1,461,470 to 1,462,831 _1293 Position (kb) 1457 1458 1459 1460 1461 1462Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1457.701 kb on + strandat 1457.711 kb on - strandat 1457.742 kb on + strandat 1457.743 kb on - strandat 1457.743 kb on - strandat 1457.743 kb on - strandat 1457.743 kb on - strandat 1457.774 kb on + strandat 1457.774 kb on + strandat 1457.775 kb on - strandat 1457.775 kb on - strandat 1457.775 kb on - strandat 1457.792 kb on - strandat 1457.807 kb on + strandat 1457.807 kb on + strandat 1457.807 kb on + strandat 1457.807 kb on + strandat 1457.807 kb on + strandat 1457.807 kb on + strandat 1457.808 kb on - strandat 1457.808 kb on - strandat 1457.808 kb on - strandat 1457.808 kb on - strandat 1457.808 kb on - strandat 1457.808 kb on - strandat 1457.818 kb on + strandat 1457.819 kb on - strandat 1457.819 kb on - strandat 1457.961 kb on - strandat 1458.036 kb on + strandat 1458.036 kb on + strandat 1458.036 kb on + strandat 1458.093 kb on + strandat 1458.190 kb on + strand, within Psyr_1292at 1458.190 kb on + strand, within Psyr_1292at 1458.190 kb on + strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.191 kb on - strand, within Psyr_1292at 1458.255 kb on + strand, within Psyr_1292at 1458.255 kb on + strand, within Psyr_1292at 1458.255 kb on + strand, within Psyr_1292at 1458.255 kb on + strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.256 kb on - strand, within Psyr_1292at 1458.334 kb on + strand, within Psyr_1292at 1458.348 kb on + strand, within Psyr_1292at 1458.349 kb on - strand, within Psyr_1292at 1458.349 kb on - strand, within Psyr_1292at 1458.378 kb on + strand, within Psyr_1292at 1458.379 kb on - strand, within Psyr_1292at 1458.399 kb on - strand, within Psyr_1292at 1458.414 kb on + strand, within Psyr_1292at 1458.414 kb on + strand, within Psyr_1292at 1458.415 kb on - strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.486 kb on + strand, within Psyr_1292at 1458.487 kb on - strand, within Psyr_1292at 1458.487 kb on - strand, within Psyr_1292at 1458.487 kb on - strand, within Psyr_1292at 1458.771 kb on + strand, within Psyr_1292at 1458.771 kb on + strand, within Psyr_1292at 1458.771 kb on + strand, within Psyr_1292at 1458.771 kb on + strand, within Psyr_1292at 1458.771 kb on + strand, within Psyr_1292at 1458.771 kb on + strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.772 kb on - strand, within Psyr_1292at 1458.773 kb on + strand, within Psyr_1292at 1458.773 kb on + strand, within Psyr_1292at 1458.774 kb on - strand, within Psyr_1292at 1458.774 kb on - strand, within Psyr_1292at 1458.774 kb on - strand, within Psyr_1292at 1458.777 kb on + strand, within Psyr_1292at 1458.777 kb on + strand, within Psyr_1292at 1458.777 kb on + strand, within Psyr_1292at 1458.777 kb on + strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.778 kb on - strand, within Psyr_1292at 1458.830 kb on + strand, within Psyr_1292at 1458.830 kb on + strand, within Psyr_1292at 1458.830 kb on + strand, within Psyr_1292at 1458.830 kb on + strandat 1458.831 kb on - strand, within Psyr_1292at 1458.831 kb on - strand, within Psyr_1292at 1458.831 kb on - strand, within Psyr_1292at 1458.831 kb on - strand, within Psyr_1292at 1458.831 kb on - strand, within Psyr_1292at 1458.971 kb on + strand, within Psyr_1292at 1458.971 kb on + strand, within Psyr_1292at 1458.971 kb on + strand, within Psyr_1292at 1458.976 kb on - strand, within Psyr_1292at 1458.976 kb on - strand, within Psyr_1292at 1458.992 kb on + strand, within Psyr_1292at 1458.993 kb on - strand, within Psyr_1292at 1458.993 kb on - strand, within Psyr_1292at 1459.060 kb on + strand, within Psyr_1292at 1459.140 kb on - strand, within Psyr_1292at 1459.140 kb on - strand, within Psyr_1292at 1459.143 kb on + strand, within Psyr_1292at 1459.143 kb on + strand, within Psyr_1292at 1459.143 kb on + strand, within Psyr_1292at 1459.143 kb on + strand, within Psyr_1292at 1459.144 kb on - strand, within Psyr_1292at 1459.144 kb on - strand, within Psyr_1292at 1459.144 kb on - strand, within Psyr_1292at 1459.144 kb on - strand, within Psyr_1292at 1459.144 kb on - strand, within Psyr_1292at 1459.213 kb on - strand, within Psyr_1292at 1459.213 kb on - strand, within Psyr_1292at 1459.590 kb on + strand, within Psyr_1292at 1459.590 kb on + strand, within Psyr_1292at 1459.590 kb on + strand, within Psyr_1292at 1459.590 kb on + strand, within Psyr_1292at 1459.591 kb on - strand, within Psyr_1292at 1459.591 kb on - strand, within Psyr_1292at 1459.591 kb on - strand, within Psyr_1292at 1459.635 kb on + strand, within Psyr_1292at 1459.635 kb on + strand, within Psyr_1292at 1459.636 kb on - strand, within Psyr_1292at 1459.737 kb on + strand, within Psyr_1292at 1459.805 kb on + strand, within Psyr_1292at 1459.805 kb on + strand, within Psyr_1292at 1459.805 kb on + strand, within Psyr_1292at 1459.806 kb on - strand, within Psyr_1292at 1459.806 kb on - strand, within Psyr_1292at 1459.806 kb on - strand, within Psyr_1292at 1460.255 kb on - strand, within Psyr_1292at 1460.476 kb on + strand, within Psyr_1292at 1460.477 kb on - strand, within Psyr_1292at 1460.702 kb on + strand, within Psyr_1292at 1460.702 kb on + strand, within Psyr_1292at 1460.703 kb on - strand, within Psyr_1292at 1460.749 kb on + strand, within Psyr_1292at 1460.865 kb on - strand, within Psyr_1292at 1461.311 kb on - strandat 1461.353 kb on - strandat 1461.464 kb on + strandat 1461.501 kb on + strandat 1461.501 kb on + strandat 1461.501 kb on + strandat 1461.501 kb on + strandat 1461.501 kb on + strandat 1461.502 kb on - strandat 1461.502 kb on - strandat 1461.507 kb on + strandat 1461.508 kb on - strandat 1461.508 kb on - strandat 1461.571 kb on + strandat 1461.571 kb on + strandat 1461.572 kb on - strandat 1461.872 kb on + strand, within Psyr_1293at 1461.872 kb on + strand, within Psyr_1293at 1461.872 kb on + strand, within Psyr_1293at 1461.906 kb on - strand, within Psyr_1293at 1461.906 kb on - strand, within Psyr_1293at 1461.906 kb on - strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.949 kb on - strand, within Psyr_1293at 1461.949 kb on - strand, within Psyr_1293at 1461.949 kb on - strand, within Psyr_1293at 1462.026 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.137 kb on - strand, within Psyr_1293at 1462.137 kb on - strand, within Psyr_1293

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,457,701 + -1.0
1,457,711 - +0.9
1,457,742 + +2.0
1,457,743 - +0.4
1,457,743 - +0.5
1,457,743 - +0.0
1,457,743 - -1.9
1,457,774 + +0.7
1,457,774 + +0.4
1,457,775 - +0.7
1,457,775 - +3.6
1,457,775 - -1.2
1,457,792 - -0.3
1,457,807 + -0.3
1,457,807 + -0.2
1,457,807 + -0.3
1,457,807 + -1.0
1,457,807 + -1.0
1,457,807 + +1.9
1,457,808 - -1.1
1,457,808 - +0.4
1,457,808 - -0.1
1,457,808 - -0.1
1,457,808 - +0.5
1,457,808 - +0.4
1,457,818 + +0.9
1,457,819 - +1.0
1,457,819 - +0.3
1,457,961 - +0.9
1,458,036 + +0.9
1,458,036 + -1.1
1,458,036 + +1.3
1,458,093 + -0.9
1,458,190 + Psyr_1292 0.11 +0.4
1,458,190 + Psyr_1292 0.11 +0.4
1,458,190 + Psyr_1292 0.11 -1.4
1,458,191 - Psyr_1292 0.11 -0.7
1,458,191 - Psyr_1292 0.11 +0.9
1,458,191 - Psyr_1292 0.11 +1.1
1,458,191 - Psyr_1292 0.11 +0.3
1,458,191 - Psyr_1292 0.11 +1.7
1,458,191 - Psyr_1292 0.11 -0.6
1,458,191 - Psyr_1292 0.11 +0.7
1,458,255 + Psyr_1292 0.12 +1.4
1,458,255 + Psyr_1292 0.12 +0.2
1,458,255 + Psyr_1292 0.12 +0.1
1,458,255 + Psyr_1292 0.12 +0.0
1,458,256 - Psyr_1292 0.12 +0.5
1,458,256 - Psyr_1292 0.12 +0.6
1,458,256 - Psyr_1292 0.12 -0.7
1,458,256 - Psyr_1292 0.12 +1.0
1,458,256 - Psyr_1292 0.12 +1.3
1,458,256 - Psyr_1292 0.12 +0.4
1,458,256 - Psyr_1292 0.12 +1.3
1,458,334 + Psyr_1292 0.14 -2.3
1,458,348 + Psyr_1292 0.15 +0.6
1,458,349 - Psyr_1292 0.15 -0.1
1,458,349 - Psyr_1292 0.15 -0.6
1,458,378 + Psyr_1292 0.16 -1.5
1,458,379 - Psyr_1292 0.16 +0.1
1,458,399 - Psyr_1292 0.16 +1.6
1,458,414 + Psyr_1292 0.17 -1.4
1,458,414 + Psyr_1292 0.17 +0.4
1,458,415 - Psyr_1292 0.17 +0.8
1,458,486 + Psyr_1292 0.19 -1.3
1,458,486 + Psyr_1292 0.19 -2.3
1,458,486 + Psyr_1292 0.19 -0.6
1,458,486 + Psyr_1292 0.19 -0.9
1,458,486 + Psyr_1292 0.19 +0.2
1,458,486 + Psyr_1292 0.19 +1.1
1,458,486 + Psyr_1292 0.19 +1.2
1,458,486 + Psyr_1292 0.19 +0.0
1,458,487 - Psyr_1292 0.19 +3.2
1,458,487 - Psyr_1292 0.19 +0.9
1,458,487 - Psyr_1292 0.19 -0.1
1,458,771 + Psyr_1292 0.27 +1.1
1,458,771 + Psyr_1292 0.27 -1.0
1,458,771 + Psyr_1292 0.27 -0.0
1,458,771 + Psyr_1292 0.27 +1.9
1,458,771 + Psyr_1292 0.27 -0.2
1,458,771 + Psyr_1292 0.27 +0.7
1,458,772 - Psyr_1292 0.27 +0.9
1,458,772 - Psyr_1292 0.27 +2.9
1,458,772 - Psyr_1292 0.27 +0.2
1,458,772 - Psyr_1292 0.27 -0.4
1,458,772 - Psyr_1292 0.27 +0.1
1,458,772 - Psyr_1292 0.27 +0.3
1,458,772 - Psyr_1292 0.27 -1.9
1,458,772 - Psyr_1292 0.27 -0.1
1,458,772 - Psyr_1292 0.27 -1.5
1,458,773 + Psyr_1292 0.27 +0.4
1,458,773 + Psyr_1292 0.27 -0.8
1,458,774 - Psyr_1292 0.27 +3.4
1,458,774 - Psyr_1292 0.27 +0.3
1,458,774 - Psyr_1292 0.27 +0.3
1,458,777 + Psyr_1292 0.27 +0.3
1,458,777 + Psyr_1292 0.27 +0.3
1,458,777 + Psyr_1292 0.27 -0.3
1,458,777 + Psyr_1292 0.27 -0.9
1,458,778 - Psyr_1292 0.27 -0.9
1,458,778 - Psyr_1292 0.27 +0.9
1,458,778 - Psyr_1292 0.27 +1.2
1,458,778 - Psyr_1292 0.27 -0.1
1,458,778 - Psyr_1292 0.27 -0.1
1,458,778 - Psyr_1292 0.27 -0.1
1,458,778 - Psyr_1292 0.27 +0.3
1,458,778 - Psyr_1292 0.27 +0.9
1,458,778 - Psyr_1292 0.27 +0.6
1,458,778 - Psyr_1292 0.27 +0.9
1,458,778 - Psyr_1292 0.27 +0.2
1,458,778 - Psyr_1292 0.27 +1.3
1,458,830 + Psyr_1292 0.28 +0.6
1,458,830 + Psyr_1292 0.28 +0.7
1,458,830 + Psyr_1292 0.28 -0.1
1,458,830 + +0.9
1,458,831 - Psyr_1292 0.28 +1.4
1,458,831 - Psyr_1292 0.28 -0.7
1,458,831 - Psyr_1292 0.28 +0.3
1,458,831 - Psyr_1292 0.28 -1.1
1,458,831 - Psyr_1292 0.28 +0.6
1,458,971 + Psyr_1292 0.32 -0.1
1,458,971 + Psyr_1292 0.32 +0.9
1,458,971 + Psyr_1292 0.32 -0.1
1,458,976 - Psyr_1292 0.32 +1.0
1,458,976 - Psyr_1292 0.32 +0.7
1,458,992 + Psyr_1292 0.33 +0.1
1,458,993 - Psyr_1292 0.33 +0.2
1,458,993 - Psyr_1292 0.33 +0.1
1,459,060 + Psyr_1292 0.34 -0.1
1,459,140 - Psyr_1292 0.37 +0.4
1,459,140 - Psyr_1292 0.37 +0.3
1,459,143 + Psyr_1292 0.37 +0.1
1,459,143 + Psyr_1292 0.37 -0.4
1,459,143 + Psyr_1292 0.37 +1.1
1,459,143 + Psyr_1292 0.37 +3.3
1,459,144 - Psyr_1292 0.37 -0.8
1,459,144 - Psyr_1292 0.37 +0.2
1,459,144 - Psyr_1292 0.37 -0.7
1,459,144 - Psyr_1292 0.37 +0.2
1,459,144 - Psyr_1292 0.37 +1.2
1,459,213 - Psyr_1292 0.39 +2.2
1,459,213 - Psyr_1292 0.39 -1.6
1,459,590 + Psyr_1292 0.49 -1.3
1,459,590 + Psyr_1292 0.49 -1.1
1,459,590 + Psyr_1292 0.49 +0.5
1,459,590 + Psyr_1292 0.49 +0.0
1,459,591 - Psyr_1292 0.49 -0.8
1,459,591 - Psyr_1292 0.49 +1.0
1,459,591 - Psyr_1292 0.49 -0.2
1,459,635 + Psyr_1292 0.50 -2.8
1,459,635 + Psyr_1292 0.50 -0.7
1,459,636 - Psyr_1292 0.50 -0.2
1,459,737 + Psyr_1292 0.53 -0.4
1,459,805 + Psyr_1292 0.55 +1.4
1,459,805 + Psyr_1292 0.55 +1.6
1,459,805 + Psyr_1292 0.55 -0.1
1,459,806 - Psyr_1292 0.55 -0.5
1,459,806 - Psyr_1292 0.55 +1.0
1,459,806 - Psyr_1292 0.55 +0.4
1,460,255 - Psyr_1292 0.67 +0.7
1,460,476 + Psyr_1292 0.73 -0.4
1,460,477 - Psyr_1292 0.74 +0.7
1,460,702 + Psyr_1292 0.80 -0.6
1,460,702 + Psyr_1292 0.80 +0.6
1,460,703 - Psyr_1292 0.80 -0.4
1,460,749 + Psyr_1292 0.81 +0.4
1,460,865 - Psyr_1292 0.84 +0.5
1,461,311 - +0.3
1,461,353 - +1.1
1,461,464 + +0.4
1,461,501 + -1.9
1,461,501 + -0.9
1,461,501 + -1.8
1,461,501 + +0.2
1,461,501 + -0.7
1,461,502 - -0.6
1,461,502 - +0.3
1,461,507 + -1.1
1,461,508 - +0.2
1,461,508 - -0.6
1,461,571 + -0.5
1,461,571 + -0.0
1,461,572 - +0.9
1,461,872 + Psyr_1293 0.30 -0.5
1,461,872 + Psyr_1293 0.30 -1.6
1,461,872 + Psyr_1293 0.30 +1.4
1,461,906 - Psyr_1293 0.32 +0.1
1,461,906 - Psyr_1293 0.32 -0.5
1,461,906 - Psyr_1293 0.32 -1.7
1,461,946 + Psyr_1293 0.35 +0.7
1,461,946 + Psyr_1293 0.35 -0.4
1,461,946 + Psyr_1293 0.35 +1.9
1,461,946 + Psyr_1293 0.35 -0.1
1,461,946 + Psyr_1293 0.35 +0.3
1,461,946 + Psyr_1293 0.35 +0.1
1,461,946 + Psyr_1293 0.35 +0.8
1,461,947 - Psyr_1293 0.35 +0.7
1,461,947 - Psyr_1293 0.35 +0.1
1,461,947 - Psyr_1293 0.35 +0.0
1,461,947 - Psyr_1293 0.35 +0.7
1,461,947 - Psyr_1293 0.35 -1.3
1,461,947 - Psyr_1293 0.35 -0.9
1,461,947 - Psyr_1293 0.35 +0.1
1,461,947 - Psyr_1293 0.35 -0.7
1,461,947 - Psyr_1293 0.35 +0.4
1,461,948 + Psyr_1293 0.35 -0.4
1,461,948 + Psyr_1293 0.35 +1.3
1,461,948 + Psyr_1293 0.35 +1.6
1,461,948 + Psyr_1293 0.35 +0.7
1,461,949 - Psyr_1293 0.35 -0.6
1,461,949 - Psyr_1293 0.35 -1.1
1,461,949 - Psyr_1293 0.35 +2.7
1,462,026 + Psyr_1293 0.41 +0.1
1,462,061 + Psyr_1293 0.43 +0.0
1,462,061 + Psyr_1293 0.43 -1.2
1,462,061 + Psyr_1293 0.43 -0.1
1,462,061 + Psyr_1293 0.43 +1.1
1,462,061 + Psyr_1293 0.43 -0.7
1,462,137 - Psyr_1293 0.49 -0.7
1,462,137 - Psyr_1293 0.49 -0.5

Or see this region's nucleotide sequence