Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1161

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1160 and Psyr_1161 are separated by 107 nucleotidesPsyr_1161 and Psyr_1162 overlap by 4 nucleotidesPsyr_1162 and Psyr_1163 overlap by 1 nucleotides Psyr_1160: Psyr_1160 - Uncharacterized protein conserved in bacteria-like protein, at 1,314,808 to 1,315,554 _1160 Psyr_1161: Psyr_1161 - transcriptional regulator, GntR family, at 1,315,662 to 1,316,348 _1161 Psyr_1162: Psyr_1162 - conserved hypothetical protein, at 1,316,345 to 1,316,740 _1162 Psyr_1163: Psyr_1163 - Isochorismatase hydrolase, at 1,316,740 to 1,317,417 _1163 Position (kb) 1315 1316 1317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1314.815 kb on + strandat 1314.819 kb on + strandat 1314.820 kb on - strandat 1314.820 kb on - strandat 1314.830 kb on + strandat 1314.831 kb on - strandat 1314.831 kb on - strandat 1314.831 kb on - strandat 1314.875 kb on + strandat 1314.875 kb on + strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.876 kb on - strandat 1314.896 kb on - strand, within Psyr_1160at 1314.896 kb on - strand, within Psyr_1160at 1314.901 kb on + strand, within Psyr_1160at 1314.901 kb on + strand, within Psyr_1160at 1314.902 kb on - strand, within Psyr_1160at 1314.902 kb on - strand, within Psyr_1160at 1314.948 kb on + strand, within Psyr_1160at 1314.948 kb on + strand, within Psyr_1160at 1314.948 kb on + strand, within Psyr_1160at 1314.949 kb on - strand, within Psyr_1160at 1314.950 kb on + strand, within Psyr_1160at 1314.950 kb on + strand, within Psyr_1160at 1314.950 kb on + strand, within Psyr_1160at 1314.950 kb on + strand, within Psyr_1160at 1314.950 kb on + strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1314.951 kb on - strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.246 kb on + strand, within Psyr_1160at 1315.247 kb on - strand, within Psyr_1160at 1315.247 kb on - strand, within Psyr_1160at 1315.247 kb on - strand, within Psyr_1160at 1315.247 kb on - strand, within Psyr_1160at 1315.250 kb on + strand, within Psyr_1160at 1315.250 kb on + strand, within Psyr_1160at 1315.251 kb on - strand, within Psyr_1160at 1315.253 kb on - strand, within Psyr_1160at 1315.253 kb on - strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.432 kb on - strand, within Psyr_1160at 1315.432 kb on - strand, within Psyr_1160at 1315.477 kb on + strand, within Psyr_1160at 1315.553 kb on - strandat 1315.574 kb on - strandat 1315.617 kb on + strandat 1315.617 kb on + strandat 1315.618 kb on - strandat 1315.618 kb on - strandat 1315.654 kb on + strandat 1315.655 kb on - strandat 1315.716 kb on + strandat 1315.716 kb on + strandat 1315.716 kb on + strandat 1315.716 kb on + strandat 1315.717 kb on - strandat 1315.717 kb on - strandat 1315.717 kb on - strandat 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.758 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.866 kb on - strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1316.021 kb on + strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.099 kb on - strand, within Psyr_1161at 1316.099 kb on - strand, within Psyr_1161at 1316.168 kb on - strand, within Psyr_1161at 1316.189 kb on - strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.686 kb on - strand, within Psyr_1162at 1316.858 kb on + strand, within Psyr_1163at 1316.858 kb on + strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1317.269 kb on - strand, within Psyr_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,314,815 + -0.7
1,314,819 + +0.7
1,314,820 - -1.5
1,314,820 - +0.9
1,314,830 + +0.5
1,314,831 - -0.1
1,314,831 - -0.7
1,314,831 - +0.1
1,314,875 + +1.1
1,314,875 + -0.7
1,314,876 - -1.5
1,314,876 - -0.5
1,314,876 - +0.3
1,314,876 - +0.5
1,314,876 - -0.6
1,314,876 - +0.4
1,314,876 - +0.2
1,314,876 - +0.6
1,314,896 - Psyr_1160 0.12 -0.6
1,314,896 - Psyr_1160 0.12 -1.9
1,314,901 + Psyr_1160 0.12 +0.3
1,314,901 + Psyr_1160 0.12 +1.0
1,314,902 - Psyr_1160 0.13 -2.3
1,314,902 - Psyr_1160 0.13 +1.5
1,314,948 + Psyr_1160 0.19 -1.6
1,314,948 + Psyr_1160 0.19 -0.4
1,314,948 + Psyr_1160 0.19 -2.0
1,314,949 - Psyr_1160 0.19 -0.7
1,314,950 + Psyr_1160 0.19 -0.7
1,314,950 + Psyr_1160 0.19 -0.7
1,314,950 + Psyr_1160 0.19 -1.6
1,314,950 + Psyr_1160 0.19 +0.3
1,314,950 + Psyr_1160 0.19 -0.1
1,314,951 - Psyr_1160 0.19 -0.3
1,314,951 - Psyr_1160 0.19 -0.1
1,314,951 - Psyr_1160 0.19 +0.4
1,314,951 - Psyr_1160 0.19 +0.9
1,314,951 - Psyr_1160 0.19 +0.0
1,314,951 - Psyr_1160 0.19 +0.0
1,314,951 - Psyr_1160 0.19 -1.9
1,314,951 - Psyr_1160 0.19 +0.9
1,314,951 - Psyr_1160 0.19 +0.3
1,315,246 + Psyr_1160 0.59 -0.1
1,315,246 + Psyr_1160 0.59 +0.2
1,315,246 + Psyr_1160 0.59 -0.1
1,315,246 + Psyr_1160 0.59 -1.1
1,315,246 + Psyr_1160 0.59 -0.6
1,315,246 + Psyr_1160 0.59 -0.7
1,315,246 + Psyr_1160 0.59 -1.7
1,315,246 + Psyr_1160 0.59 -0.5
1,315,247 - Psyr_1160 0.59 -1.1
1,315,247 - Psyr_1160 0.59 -0.8
1,315,247 - Psyr_1160 0.59 -0.3
1,315,247 - Psyr_1160 0.59 +0.6
1,315,250 + Psyr_1160 0.59 -2.5
1,315,250 + Psyr_1160 0.59 -0.1
1,315,251 - Psyr_1160 0.59 +1.1
1,315,253 - Psyr_1160 0.60 -1.9
1,315,253 - Psyr_1160 0.60 +0.0
1,315,408 + Psyr_1160 0.80 -1.5
1,315,408 + Psyr_1160 0.80 -0.4
1,315,408 + Psyr_1160 0.80 +0.1
1,315,408 + Psyr_1160 0.80 +1.9
1,315,408 + Psyr_1160 0.80 +1.9
1,315,408 + Psyr_1160 0.80 -2.5
1,315,408 + Psyr_1160 0.80 -1.8
1,315,408 + Psyr_1160 0.80 +0.4
1,315,409 - Psyr_1160 0.80 +0.9
1,315,409 - Psyr_1160 0.80 +0.7
1,315,409 - Psyr_1160 0.80 +0.9
1,315,409 - Psyr_1160 0.80 +0.1
1,315,409 - Psyr_1160 0.80 +0.1
1,315,432 - Psyr_1160 0.84 -1.1
1,315,432 - Psyr_1160 0.84 +1.9
1,315,477 + Psyr_1160 0.90 -1.9
1,315,553 - -0.9
1,315,574 - -0.3
1,315,617 + -1.5
1,315,617 + -1.1
1,315,618 - +0.3
1,315,618 - -1.9
1,315,654 + +0.4
1,315,655 - +0.7
1,315,716 + +1.7
1,315,716 + -0.5
1,315,716 + -0.1
1,315,716 + -0.4
1,315,717 - +1.2
1,315,717 - +0.3
1,315,717 - -2.6
1,315,737 + Psyr_1161 0.11 -0.7
1,315,737 + Psyr_1161 0.11 -0.4
1,315,737 + Psyr_1161 0.11 -0.9
1,315,737 + Psyr_1161 0.11 -1.2
1,315,737 + Psyr_1161 0.11 +0.6
1,315,737 + Psyr_1161 0.11 -0.2
1,315,738 - Psyr_1161 0.11 +0.3
1,315,738 - Psyr_1161 0.11 +1.2
1,315,738 - Psyr_1161 0.11 +0.3
1,315,738 - Psyr_1161 0.11 -2.3
1,315,738 - Psyr_1161 0.11 +0.7
1,315,758 + Psyr_1161 0.14 -0.7
1,315,816 + Psyr_1161 0.22 -0.8
1,315,816 + Psyr_1161 0.22 -0.8
1,315,816 + Psyr_1161 0.22 +1.3
1,315,816 + Psyr_1161 0.22 -0.8
1,315,816 + Psyr_1161 0.22 -0.7
1,315,816 + Psyr_1161 0.22 -0.0
1,315,817 - Psyr_1161 0.23 +0.5
1,315,817 - Psyr_1161 0.23 +0.2
1,315,817 - Psyr_1161 0.23 -0.5
1,315,817 - Psyr_1161 0.23 -1.1
1,315,820 + Psyr_1161 0.23 +1.5
1,315,820 + Psyr_1161 0.23 -0.1
1,315,820 + Psyr_1161 0.23 +0.3
1,315,820 + Psyr_1161 0.23 +0.2
1,315,820 + Psyr_1161 0.23 -0.1
1,315,820 + Psyr_1161 0.23 -0.9
1,315,820 + Psyr_1161 0.23 -0.6
1,315,820 + Psyr_1161 0.23 -1.3
1,315,820 + Psyr_1161 0.23 +2.2
1,315,820 + Psyr_1161 0.23 +0.4
1,315,820 + Psyr_1161 0.23 +0.5
1,315,820 + Psyr_1161 0.23 -0.5
1,315,820 + Psyr_1161 0.23 -0.5
1,315,820 + Psyr_1161 0.23 +0.7
1,315,821 - Psyr_1161 0.23 +0.1
1,315,821 - Psyr_1161 0.23 +0.5
1,315,821 - Psyr_1161 0.23 +0.7
1,315,821 - Psyr_1161 0.23 -0.1
1,315,821 - Psyr_1161 0.23 -1.1
1,315,821 - Psyr_1161 0.23 -1.4
1,315,821 - Psyr_1161 0.23 -0.5
1,315,821 - Psyr_1161 0.23 +0.6
1,315,821 - Psyr_1161 0.23 +0.3
1,315,821 - Psyr_1161 0.23 -0.2
1,315,821 - Psyr_1161 0.23 -1.6
1,315,821 - Psyr_1161 0.23 -0.8
1,315,821 - Psyr_1161 0.23 -0.0
1,315,821 - Psyr_1161 0.23 -0.5
1,315,821 - Psyr_1161 0.23 -0.1
1,315,866 - Psyr_1161 0.30 -0.1
1,315,973 + Psyr_1161 0.45 +1.9
1,315,973 + Psyr_1161 0.45 +0.2
1,315,973 + Psyr_1161 0.45 +0.9
1,315,973 + Psyr_1161 0.45 +1.4
1,315,973 + Psyr_1161 0.45 -0.1
1,315,974 - Psyr_1161 0.45 -3.0
1,315,974 - Psyr_1161 0.45 +0.1
1,315,974 - Psyr_1161 0.45 -0.7
1,315,974 - Psyr_1161 0.45 +0.0
1,315,974 - Psyr_1161 0.45 -1.3
1,315,974 - Psyr_1161 0.45 +2.1
1,315,977 + Psyr_1161 0.46 -0.1
1,315,977 + Psyr_1161 0.46 -2.1
1,315,977 + Psyr_1161 0.46 +0.1
1,315,977 + Psyr_1161 0.46 +0.1
1,315,977 + Psyr_1161 0.46 -1.1
1,315,977 + Psyr_1161 0.46 -0.5
1,315,977 + Psyr_1161 0.46 -1.0
1,315,977 + Psyr_1161 0.46 -1.1
1,315,977 + Psyr_1161 0.46 +0.5
1,315,977 + Psyr_1161 0.46 -0.2
1,315,977 + Psyr_1161 0.46 -0.4
1,315,977 + Psyr_1161 0.46 -0.7
1,315,977 + Psyr_1161 0.46 +1.0
1,315,977 + Psyr_1161 0.46 -1.8
1,315,977 + Psyr_1161 0.46 +1.2
1,315,977 + Psyr_1161 0.46 +1.9
1,315,978 - Psyr_1161 0.46 -1.9
1,315,978 - Psyr_1161 0.46 -0.8
1,315,978 - Psyr_1161 0.46 -1.1
1,315,978 - Psyr_1161 0.46 -1.1
1,315,978 - Psyr_1161 0.46 -0.5
1,315,978 - Psyr_1161 0.46 -2.8
1,315,978 - Psyr_1161 0.46 -1.6
1,315,978 - Psyr_1161 0.46 +1.0
1,315,978 - Psyr_1161 0.46 -0.1
1,315,978 - Psyr_1161 0.46 -0.1
1,316,021 + Psyr_1161 0.52 +0.5
1,316,022 - Psyr_1161 0.52 -0.6
1,316,022 - Psyr_1161 0.52 +0.6
1,316,098 + Psyr_1161 0.63 -1.0
1,316,098 + Psyr_1161 0.63 +0.7
1,316,098 + Psyr_1161 0.63 -0.3
1,316,099 - Psyr_1161 0.64 -0.8
1,316,099 - Psyr_1161 0.64 +0.2
1,316,168 - Psyr_1161 0.74 +0.6
1,316,189 - Psyr_1161 0.77 -0.9
1,316,272 + Psyr_1161 0.89 +0.5
1,316,272 + Psyr_1161 0.89 -0.8
1,316,272 + Psyr_1161 0.89 -0.9
1,316,272 + Psyr_1161 0.89 -1.6
1,316,273 - Psyr_1161 0.89 +0.9
1,316,273 - Psyr_1161 0.89 -0.4
1,316,640 + Psyr_1162 0.74 -0.2
1,316,640 + Psyr_1162 0.74 +1.2
1,316,640 + Psyr_1162 0.74 +0.5
1,316,641 - Psyr_1162 0.75 +1.2
1,316,641 - Psyr_1162 0.75 -0.1
1,316,641 - Psyr_1162 0.75 +1.7
1,316,641 - Psyr_1162 0.75 +0.7
1,316,686 - Psyr_1162 0.86 -0.3
1,316,858 + Psyr_1163 0.17 -0.6
1,316,858 + Psyr_1163 0.17 -0.3
1,316,859 - Psyr_1163 0.18 +0.9
1,316,859 - Psyr_1163 0.18 -2.9
1,316,859 - Psyr_1163 0.18 +0.9
1,316,859 - Psyr_1163 0.18 +0.6
1,317,269 - Psyr_1163 0.78 +0.2

Or see this region's nucleotide sequence