Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0939

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0938 and Psyr_0939 are separated by 121 nucleotidesPsyr_0939 and Psyr_0940 overlap by 79 nucleotidesPsyr_0940 and Psyr_0941 are separated by 127 nucleotides Psyr_0938: Psyr_0938 - hypothetical protein, at 1,074,450 to 1,075,661 _0938 Psyr_0939: Psyr_0939 - CDS, at 1,075,783 to 1,076,142 _0939 Psyr_0940: Psyr_0940 - CDS, at 1,076,064 to 1,076,363 _0940 Psyr_0941: Psyr_0941 - Conserved hypothetical protein 92, at 1,076,491 to 1,077,591 _0941 Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1074.783 kb on + strand, within Psyr_0938at 1074.783 kb on + strand, within Psyr_0938at 1074.784 kb on - strand, within Psyr_0938at 1074.784 kb on - strand, within Psyr_0938at 1074.789 kb on + strand, within Psyr_0938at 1074.833 kb on + strand, within Psyr_0938at 1074.893 kb on - strand, within Psyr_0938at 1074.893 kb on - strand, within Psyr_0938at 1074.924 kb on + strand, within Psyr_0938at 1074.933 kb on + strand, within Psyr_0938at 1074.975 kb on - strand, within Psyr_0938at 1074.991 kb on + strand, within Psyr_0938at 1074.991 kb on + strand, within Psyr_0938at 1074.991 kb on + strand, within Psyr_0938at 1074.992 kb on - strand, within Psyr_0938at 1074.992 kb on - strand, within Psyr_0938at 1075.036 kb on - strand, within Psyr_0938at 1075.051 kb on + strand, within Psyr_0938at 1075.166 kb on - strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.256 kb on + strand, within Psyr_0938at 1075.296 kb on - strand, within Psyr_0938at 1075.296 kb on - strand, within Psyr_0938at 1075.299 kb on - strand, within Psyr_0938at 1075.384 kb on - strand, within Psyr_0938at 1075.384 kb on - strand, within Psyr_0938at 1075.389 kb on + strand, within Psyr_0938at 1075.390 kb on - strand, within Psyr_0938at 1075.398 kb on - strand, within Psyr_0938at 1075.398 kb on - strand, within Psyr_0938at 1075.511 kb on + strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.557 kb on + strandat 1075.559 kb on + strandat 1075.560 kb on - strandat 1075.560 kb on - strandat 1075.622 kb on + strandat 1075.626 kb on + strandat 1075.637 kb on + strandat 1075.637 kb on + strandat 1075.755 kb on + strandat 1075.755 kb on + strandat 1075.756 kb on - strandat 1075.756 kb on - strandat 1075.799 kb on - strandat 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.901 kb on - strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.948 kb on + strand, within Psyr_0939at 1075.982 kb on + strand, within Psyr_0939at 1075.982 kb on + strand, within Psyr_0939at 1075.983 kb on - strand, within Psyr_0939at 1075.983 kb on - strand, within Psyr_0939at 1076.031 kb on + strand, within Psyr_0939at 1076.031 kb on + strand, within Psyr_0939at 1076.088 kb on + strandat 1076.088 kb on + strandat 1076.199 kb on + strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.267 kb on + strand, within Psyr_0940at 1076.267 kb on + strand, within Psyr_0940at 1076.268 kb on - strand, within Psyr_0940at 1076.268 kb on - strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.301 kb on + strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.336 kb on + strandat 1076.336 kb on + strandat 1076.336 kb on + strandat 1076.337 kb on - strandat 1076.337 kb on - strandat 1076.408 kb on + strandat 1076.409 kb on - strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.612 kb on + strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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1,074,783 + Psyr_0938 0.27 +0.2
1,074,783 + Psyr_0938 0.27 -2.3
1,074,784 - Psyr_0938 0.28 -0.2
1,074,784 - Psyr_0938 0.28 -1.5
1,074,789 + Psyr_0938 0.28 +0.6
1,074,833 + Psyr_0938 0.32 -0.4
1,074,893 - Psyr_0938 0.37 -1.3
1,074,893 - Psyr_0938 0.37 -0.4
1,074,924 + Psyr_0938 0.39 -0.6
1,074,933 + Psyr_0938 0.40 +0.7
1,074,975 - Psyr_0938 0.43 -0.8
1,074,991 + Psyr_0938 0.45 +0.3
1,074,991 + Psyr_0938 0.45 -0.1
1,074,991 + Psyr_0938 0.45 -0.4
1,074,992 - Psyr_0938 0.45 -0.5
1,074,992 - Psyr_0938 0.45 +0.6
1,075,036 - Psyr_0938 0.48 -0.3
1,075,051 + Psyr_0938 0.50 -0.0
1,075,166 - Psyr_0938 0.59 -0.1
1,075,176 + Psyr_0938 0.60 +0.6
1,075,176 + Psyr_0938 0.60 -0.9
1,075,176 + Psyr_0938 0.60 -0.0
1,075,176 + Psyr_0938 0.60 -0.9
1,075,176 + Psyr_0938 0.60 +0.7
1,075,256 + Psyr_0938 0.67 +0.1
1,075,296 - Psyr_0938 0.70 -0.4
1,075,296 - Psyr_0938 0.70 +0.6
1,075,299 - Psyr_0938 0.70 -0.5
1,075,384 - Psyr_0938 0.77 +0.5
1,075,384 - Psyr_0938 0.77 +0.1
1,075,389 + Psyr_0938 0.77 -2.0
1,075,390 - Psyr_0938 0.78 +1.2
1,075,398 - Psyr_0938 0.78 -0.7
1,075,398 - Psyr_0938 0.78 +0.8
1,075,511 + Psyr_0938 0.88 -1.4
1,075,512 - Psyr_0938 0.88 -1.0
1,075,512 - Psyr_0938 0.88 -0.7
1,075,512 - Psyr_0938 0.88 +0.0
1,075,512 - Psyr_0938 0.88 -0.1
1,075,557 + -0.0
1,075,559 + +3.1
1,075,560 - +0.3
1,075,560 - +0.2
1,075,622 + +0.3
1,075,626 + +0.6
1,075,637 + -0.3
1,075,637 + -1.0
1,075,755 + +0.1
1,075,755 + +1.8
1,075,756 - +0.9
1,075,756 - +2.1
1,075,799 - +0.2
1,075,874 + Psyr_0939 0.25 +1.8
1,075,874 + Psyr_0939 0.25 +0.9
1,075,874 + Psyr_0939 0.25 +1.6
1,075,874 + Psyr_0939 0.25 -0.7
1,075,875 - Psyr_0939 0.26 -1.9
1,075,875 - Psyr_0939 0.26 +0.4
1,075,875 - Psyr_0939 0.26 -1.4
1,075,901 - Psyr_0939 0.33 +0.9
1,075,919 + Psyr_0939 0.38 -0.4
1,075,919 + Psyr_0939 0.38 +0.3
1,075,919 + Psyr_0939 0.38 +2.1
1,075,919 + Psyr_0939 0.38 +0.9
1,075,919 + Psyr_0939 0.38 +0.2
1,075,919 + Psyr_0939 0.38 +0.5
1,075,919 + Psyr_0939 0.38 +3.5
1,075,920 - Psyr_0939 0.38 +1.3
1,075,920 - Psyr_0939 0.38 -1.4
1,075,948 + Psyr_0939 0.46 -0.2
1,075,982 + Psyr_0939 0.55 -0.3
1,075,982 + Psyr_0939 0.55 -0.5
1,075,983 - Psyr_0939 0.56 -0.1
1,075,983 - Psyr_0939 0.56 -2.1
1,076,031 + Psyr_0939 0.69 +0.5
1,076,031 + Psyr_0939 0.69 +1.8
1,076,088 + +0.0
1,076,088 + +0.1
1,076,199 + Psyr_0940 0.45 -0.5
1,076,200 - Psyr_0940 0.45 -0.2
1,076,200 - Psyr_0940 0.45 -1.5
1,076,200 - Psyr_0940 0.45 -0.4
1,076,200 - Psyr_0940 0.45 -0.7
1,076,200 - Psyr_0940 0.45 -0.1
1,076,200 - Psyr_0940 0.45 -0.3
1,076,223 + Psyr_0940 0.53 -2.1
1,076,223 + Psyr_0940 0.53 +0.1
1,076,223 + Psyr_0940 0.53 +1.7
1,076,223 + Psyr_0940 0.53 -1.3
1,076,224 - Psyr_0940 0.53 -0.5
1,076,224 - Psyr_0940 0.53 +0.5
1,076,224 - Psyr_0940 0.53 -1.0
1,076,224 - Psyr_0940 0.53 -1.0
1,076,224 - Psyr_0940 0.53 -0.6
1,076,267 + Psyr_0940 0.68 -0.3
1,076,267 + Psyr_0940 0.68 -0.4
1,076,268 - Psyr_0940 0.68 -0.1
1,076,268 - Psyr_0940 0.68 +0.1
1,076,297 + Psyr_0940 0.78 -1.8
1,076,297 + Psyr_0940 0.78 +0.0
1,076,297 + Psyr_0940 0.78 +2.0
1,076,297 + Psyr_0940 0.78 +0.4
1,076,297 + Psyr_0940 0.78 +1.1
1,076,297 + Psyr_0940 0.78 +1.2
1,076,297 + Psyr_0940 0.78 +1.2
1,076,297 + Psyr_0940 0.78 -0.2
1,076,298 - Psyr_0940 0.78 -0.9
1,076,298 - Psyr_0940 0.78 +0.9
1,076,298 - Psyr_0940 0.78 -0.3
1,076,298 - Psyr_0940 0.78 -0.5
1,076,298 - Psyr_0940 0.78 -1.6
1,076,301 + Psyr_0940 0.79 -0.2
1,076,302 - Psyr_0940 0.79 -0.1
1,076,302 - Psyr_0940 0.79 -1.1
1,076,302 - Psyr_0940 0.79 +0.6
1,076,336 + +0.6
1,076,336 + -0.5
1,076,336 + +0.5
1,076,337 - +0.1
1,076,337 - -0.7
1,076,408 + +0.6
1,076,409 - +1.3
1,076,537 + -1.7
1,076,537 + -1.1
1,076,537 + -1.3
1,076,537 + -1.9
1,076,537 + -1.9
1,076,537 + +1.2
1,076,537 + -1.4
1,076,538 - -1.4
1,076,538 - -1.2
1,076,538 - -1.3
1,076,538 - -0.8
1,076,538 - +0.9
1,076,612 + Psyr_0941 0.11 -1.0
1,076,613 - Psyr_0941 0.11 +0.3
1,076,613 - Psyr_0941 0.11 +1.9
1,076,613 - Psyr_0941 0.11 -3.2
1,076,738 + Psyr_0941 0.22 -0.5
1,076,738 + Psyr_0941 0.22 -0.7
1,076,975 + Psyr_0941 0.44 -1.4
1,076,975 + Psyr_0941 0.44 -1.1
1,076,975 + Psyr_0941 0.44 -1.3
1,076,975 + Psyr_0941 0.44 -1.9
1,076,975 + Psyr_0941 0.44 -0.5
1,076,975 + Psyr_0941 0.44 +0.9
1,076,975 + Psyr_0941 0.44 -1.3
1,076,975 + Psyr_0941 0.44 -0.5
1,076,975 + Psyr_0941 0.44 -1.2
1,076,975 + Psyr_0941 0.44 -1.7
1,076,975 + Psyr_0941 0.44 -2.1
1,076,975 + Psyr_0941 0.44 -2.5
1,076,975 + Psyr_0941 0.44 -1.1
1,076,975 + Psyr_0941 0.44 -1.0
1,076,976 - Psyr_0941 0.44 -1.2
1,076,976 - Psyr_0941 0.44 +0.5
1,076,976 - Psyr_0941 0.44 -2.9
1,076,976 - Psyr_0941 0.44 -0.1
1,076,976 - Psyr_0941 0.44 +0.5
1,076,976 - Psyr_0941 0.44 -0.8
1,076,976 - Psyr_0941 0.44 -0.9
1,076,976 - Psyr_0941 0.44 -0.4
1,076,976 - Psyr_0941 0.44 +0.3
1,076,976 - Psyr_0941 0.44 +0.0

Or see this region's nucleotide sequence