Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0627 and Psyr_0628 are separated by 11 nucleotides Psyr_0628 and Psyr_0629 are separated by 431 nucleotides
Psyr_0627: Psyr_0627 - Ethanolamine ammonia-lyase light chain, at 716,118 to 716,966
_0627
Psyr_0628: Psyr_0628 - Ethanolamine ammonia-lyase heavy chain, at 716,978 to 718,372
_0628
Psyr_0629: Psyr_0629 - Aldehyde dehydrogenase (NAD+), at 718,804 to 720,324
_0629
Position (kb) 716
717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 716.003 kb on + strand at 716.003 kb on + strand at 716.004 kb on - strand at 716.004 kb on - strand at 716.035 kb on + strand at 716.035 kb on + strand at 716.036 kb on - strand at 716.036 kb on - strand at 716.049 kb on + strand at 716.102 kb on + strand at 716.102 kb on + strand at 716.103 kb on - strand at 716.269 kb on + strand, within Psyr_0627 at 716.269 kb on + strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.327 kb on + strand, within Psyr_0627 at 716.327 kb on + strand, within Psyr_0627 at 716.327 kb on + strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.378 kb on - strand, within Psyr_0627 at 716.611 kb on - strand, within Psyr_0627 at 716.611 kb on - strand, within Psyr_0627 at 716.648 kb on - strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.711 kb on - strand, within Psyr_0627 at 716.711 kb on - strand, within Psyr_0627 at 716.711 kb on - strand, within Psyr_0627 at 716.955 kb on + strand at 716.955 kb on + strand at 716.955 kb on + strand at 716.955 kb on + strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.985 kb on - strand at 716.985 kb on - strand at 716.985 kb on - strand at 716.985 kb on - strand at 717.088 kb on - strand at 717.156 kb on + strand, within Psyr_0628 at 717.156 kb on + strand, within Psyr_0628 at 717.156 kb on + strand, within Psyr_0628 at 717.157 kb on - strand, within Psyr_0628 at 717.157 kb on - strand, within Psyr_0628 at 717.274 kb on - strand, within Psyr_0628 at 717.360 kb on + strand, within Psyr_0628 at 717.360 kb on + strand, within Psyr_0628 at 717.360 kb on + strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.433 kb on - strand, within Psyr_0628 at 717.513 kb on + strand, within Psyr_0628 at 717.513 kb on + strand, within Psyr_0628 at 717.513 kb on + strand, within Psyr_0628 at 717.514 kb on - strand, within Psyr_0628 at 717.514 kb on - strand, within Psyr_0628 at 717.565 kb on - strand, within Psyr_0628 at 717.716 kb on + strand, within Psyr_0628 at 717.716 kb on + strand, within Psyr_0628 at 717.717 kb on - strand, within Psyr_0628 at 717.823 kb on - strand, within Psyr_0628 at 718.211 kb on - strand, within Psyr_0628 at 718.275 kb on + strand at 718.276 kb on - strand at 718.372 kb on + strand at 718.452 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.478 kb on - strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.612 kb on + strand at 718.626 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.693 kb on - strand at 718.693 kb on - strand at 718.709 kb on + strand at 718.710 kb on - strand at 718.722 kb on - strand at 718.722 kb on - strand at 718.763 kb on + strand at 718.764 kb on - strand at 718.801 kb on + strand at 718.801 kb on + strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.913 kb on + strand at 718.913 kb on + strand at 718.998 kb on - strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.261 kb on + strand, within Psyr_0629
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 716,003 + -1.0 716,003 + -0.3 716,004 - +0.5 716,004 - -2.1 716,035 + -0.1 716,035 + +0.2 716,036 - -2.2 716,036 - -0.5 716,049 + +0.0 716,102 + +0.3 716,102 + +1.0 716,103 - +0.8 716,269 + Psyr_0627 0.18 +0.1 716,269 + Psyr_0627 0.18 -2.4 716,270 - Psyr_0627 0.18 -0.9 716,270 - Psyr_0627 0.18 -0.1 716,270 - Psyr_0627 0.18 -0.4 716,270 - Psyr_0627 0.18 -0.1 716,270 - Psyr_0627 0.18 +0.7 716,327 + Psyr_0627 0.25 +0.7 716,327 + Psyr_0627 0.25 +1.2 716,327 + Psyr_0627 0.25 +0.7 716,328 - Psyr_0627 0.25 +3.6 716,328 - Psyr_0627 0.25 -0.4 716,328 - Psyr_0627 0.25 -0.6 716,328 - Psyr_0627 0.25 +2.4 716,328 - Psyr_0627 0.25 -1.9 716,328 - Psyr_0627 0.25 +0.7 716,368 + Psyr_0627 0.29 -0.6 716,368 + Psyr_0627 0.29 -0.8 716,368 + Psyr_0627 0.29 +0.2 716,368 + Psyr_0627 0.29 +1.8 716,369 - Psyr_0627 0.30 +0.4 716,369 - Psyr_0627 0.30 +0.0 716,369 - Psyr_0627 0.30 +0.4 716,369 - Psyr_0627 0.30 +1.1 716,369 - Psyr_0627 0.30 +0.9 716,377 + Psyr_0627 0.31 +0.9 716,377 + Psyr_0627 0.31 -1.3 716,377 + Psyr_0627 0.31 +0.6 716,377 + Psyr_0627 0.31 +1.3 716,378 - Psyr_0627 0.31 -2.2 716,611 - Psyr_0627 0.58 +0.0 716,611 - Psyr_0627 0.58 +0.4 716,648 - Psyr_0627 0.62 -1.3 716,710 + Psyr_0627 0.70 +1.8 716,710 + Psyr_0627 0.70 +0.5 716,710 + Psyr_0627 0.70 +0.2 716,710 + Psyr_0627 0.70 -0.1 716,710 + Psyr_0627 0.70 +0.1 716,710 + Psyr_0627 0.70 -0.4 716,710 + Psyr_0627 0.70 +0.1 716,710 + Psyr_0627 0.70 +1.0 716,711 - Psyr_0627 0.70 +0.2 716,711 - Psyr_0627 0.70 -0.3 716,711 - Psyr_0627 0.70 +0.1 716,955 + +0.6 716,955 + +0.0 716,955 + -0.1 716,955 + -0.4 716,956 - -0.8 716,956 - -0.3 716,956 - -0.7 716,956 - -0.1 716,956 - +0.4 716,956 - -0.3 716,984 + -2.2 716,984 + +0.7 716,984 + +0.3 716,984 + -1.5 716,984 + +0.1 716,984 + +0.1 716,984 + +0.6 716,984 + -0.6 716,985 - -0.1 716,985 - -0.8 716,985 - +1.0 716,985 - +0.4 717,088 - +0.5 717,156 + Psyr_0628 0.13 +0.0 717,156 + Psyr_0628 0.13 +0.3 717,156 + Psyr_0628 0.13 +0.0 717,157 - Psyr_0628 0.13 -1.0 717,157 - Psyr_0628 0.13 -1.1 717,274 - Psyr_0628 0.21 +1.5 717,360 + Psyr_0628 0.27 +0.4 717,360 + Psyr_0628 0.27 +0.0 717,360 + Psyr_0628 0.27 -1.6 717,361 - Psyr_0628 0.27 +0.8 717,361 - Psyr_0628 0.27 +0.5 717,361 - Psyr_0628 0.27 +0.5 717,361 - Psyr_0628 0.27 +1.0 717,433 - Psyr_0628 0.33 +0.0 717,513 + Psyr_0628 0.38 +1.0 717,513 + Psyr_0628 0.38 +2.2 717,513 + Psyr_0628 0.38 +2.6 717,514 - Psyr_0628 0.38 +1.1 717,514 - Psyr_0628 0.38 +1.3 717,565 - Psyr_0628 0.42 +0.6 717,716 + Psyr_0628 0.53 -1.1 717,716 + Psyr_0628 0.53 +0.4 717,717 - Psyr_0628 0.53 +0.7 717,823 - Psyr_0628 0.61 +1.6 718,211 - Psyr_0628 0.88 -3.2 718,275 + +0.6 718,276 - +1.6 718,372 + -1.3 718,452 + +2.3 718,466 + +1.0 718,466 + -0.1 718,466 + -0.3 718,466 + -2.0 718,467 - -0.4 718,467 - +2.0 718,467 - -1.3 718,474 + +0.2 718,474 + +0.3 718,474 + -0.1 718,474 + +0.0 718,474 + +0.6 718,475 - -0.5 718,475 - -1.0 718,475 - +0.3 718,475 - -1.6 718,477 + +0.8 718,477 + +0.2 718,477 + +0.4 718,478 - -1.2 718,537 + -0.4 718,537 + -0.1 718,537 + -1.8 718,537 + -0.2 718,538 - -0.3 718,538 - -1.3 718,538 - -0.4 718,538 - +0.0 718,538 - -1.8 718,538 - +0.7 718,538 - -0.4 718,538 - -0.1 718,538 - +0.0 718,538 - +0.1 718,612 + -0.9 718,626 - +0.0 718,628 - +2.0 718,628 - +2.0 718,628 - -1.6 718,628 - +0.8 718,628 - -0.6 718,628 - +0.0 718,628 - +0.8 718,628 - -0.5 718,628 - +1.0 718,693 - -1.0 718,693 - -0.6 718,709 + -1.2 718,710 - +0.4 718,722 - -0.7 718,722 - -0.7 718,763 + -1.0 718,764 - +0.7 718,801 + -0.2 718,801 + -1.6 718,802 - -0.3 718,802 - -0.4 718,802 - +2.7 718,805 + +0.5 718,805 + +1.0 718,805 + -2.0 718,806 - -0.5 718,806 - -1.0 718,806 - +0.5 718,806 - +0.3 718,806 - -1.2 718,806 - +0.4 718,832 + +0.0 718,832 + -0.8 718,832 + +0.8 718,832 + -0.4 718,832 + +0.1 718,833 - -0.8 718,833 - -0.4 718,833 - +1.0 718,913 + -0.8 718,913 + -0.7 718,998 - Psyr_0629 0.13 -0.7 719,174 + Psyr_0629 0.24 -1.1 719,174 + Psyr_0629 0.24 +0.1 719,174 + Psyr_0629 0.24 -0.9 719,174 + Psyr_0629 0.24 -0.4 719,174 + Psyr_0629 0.24 -0.6 719,174 + Psyr_0629 0.24 +0.5 719,174 + Psyr_0629 0.24 -1.0 719,174 + Psyr_0629 0.24 -0.5 719,174 + Psyr_0629 0.24 -0.8 719,174 + Psyr_0629 0.24 -1.8 719,174 + Psyr_0629 0.24 +0.6 719,174 + Psyr_0629 0.24 +2.0 719,175 - Psyr_0629 0.24 +0.3 719,175 - Psyr_0629 0.24 +0.0 719,175 - Psyr_0629 0.24 +1.0 719,175 - Psyr_0629 0.24 +0.5 719,175 - Psyr_0629 0.24 +0.3 719,175 - Psyr_0629 0.24 +0.1 719,175 - Psyr_0629 0.24 +1.2 719,175 - Psyr_0629 0.24 +0.8 719,261 + Psyr_0629 0.30 -0.3
Or see this region's nucleotide sequence