Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0366

Experiment: KB with Carbenicillin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0364 and Psyr_0365 are separated by 49 nucleotidesPsyr_0365 and Psyr_0366 overlap by 4 nucleotidesPsyr_0366 and Psyr_0367 are separated by 93 nucleotides Psyr_0364: Psyr_0364 - sodium/proton antiporter, NhaA family, at 388,591 to 389,766 _0364 Psyr_0365: Psyr_0365 - protein of unknown function DUF886, at 389,816 to 390,412 _0365 Psyr_0366: Psyr_0366 - transcriptional regulator, GntR family, at 390,409 to 391,230 _0366 Psyr_0367: Psyr_0367 - formimidoylglutamate deiminase, at 391,324 to 392,688 _0367 Position (kb) 390 391 392Strain fitness (log2 ratio) -2 -1 0 1 2at 389.423 kb on + strand, within Psyr_0364at 389.423 kb on + strand, within Psyr_0364at 389.423 kb on + strand, within Psyr_0364at 389.423 kb on + strand, within Psyr_0364at 389.424 kb on - strand, within Psyr_0364at 389.795 kb on - strandat 389.796 kb on + strandat 389.797 kb on - strandat 389.797 kb on - strandat 389.817 kb on + strandat 389.999 kb on - strand, within Psyr_0365at 390.038 kb on + strand, within Psyr_0365at 390.075 kb on + strand, within Psyr_0365at 390.075 kb on + strand, within Psyr_0365at 390.075 kb on + strand, within Psyr_0365at 390.076 kb on - strand, within Psyr_0365at 390.076 kb on - strand, within Psyr_0365at 390.076 kb on - strand, within Psyr_0365at 390.076 kb on - strand, within Psyr_0365at 390.076 kb on - strand, within Psyr_0365at 390.417 kb on + strandat 390.495 kb on + strand, within Psyr_0366at 390.495 kb on + strand, within Psyr_0366at 390.620 kb on + strand, within Psyr_0366at 390.621 kb on - strand, within Psyr_0366at 390.621 kb on - strand, within Psyr_0366at 390.659 kb on + strand, within Psyr_0366at 390.722 kb on + strand, within Psyr_0366at 390.976 kb on + strand, within Psyr_0366at 391.094 kb on + strand, within Psyr_0366at 391.094 kb on + strand, within Psyr_0366at 391.094 kb on + strand, within Psyr_0366at 391.095 kb on - strand, within Psyr_0366at 391.095 kb on - strand, within Psyr_0366at 391.095 kb on - strand, within Psyr_0366at 391.232 kb on - strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.285 kb on - strandat 391.285 kb on - strandat 391.285 kb on - strandat 391.287 kb on - strandat 391.287 kb on - strandat 391.287 kb on - strandat 391.290 kb on + strandat 391.290 kb on + strandat 391.290 kb on + strandat 391.291 kb on - strandat 391.291 kb on - strandat 391.291 kb on - strandat 391.292 kb on + strandat 391.293 kb on - strandat 391.294 kb on + strandat 391.301 kb on + strandat 391.352 kb on + strandat 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strandat 391.580 kb on - strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.684 kb on + strand, within Psyr_0367at 391.684 kb on + strand, within Psyr_0367at 391.685 kb on - strand, within Psyr_0367at 391.798 kb on + strand, within Psyr_0367at 391.798 kb on + strand, within Psyr_0367at 391.798 kb on + strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.851 kb on + strand, within Psyr_0367at 391.870 kb on + strand, within Psyr_0367at 391.870 kb on + strand, within Psyr_0367at 391.870 kb on + strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.935 kb on - strand, within Psyr_0367at 391.973 kb on + strand, within Psyr_0367at 391.973 kb on + strand, within Psyr_0367at 391.974 kb on - strand, within Psyr_0367at 392.092 kb on + strand, within Psyr_0367at 392.093 kb on - strand, within Psyr_0367at 392.196 kb on - strand, within Psyr_0367

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml
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389,423 + Psyr_0364 0.71 +0.0
389,423 + Psyr_0364 0.71 -2.1
389,423 + Psyr_0364 0.71 -0.6
389,423 + Psyr_0364 0.71 -0.2
389,424 - Psyr_0364 0.71 +0.1
389,795 - -0.9
389,796 + +1.7
389,797 - +1.3
389,797 - -0.7
389,817 + +0.7
389,999 - Psyr_0365 0.31 +0.8
390,038 + Psyr_0365 0.37 +0.4
390,075 + Psyr_0365 0.43 +0.5
390,075 + Psyr_0365 0.43 -0.6
390,075 + Psyr_0365 0.43 -0.6
390,076 - Psyr_0365 0.44 +0.3
390,076 - Psyr_0365 0.44 -0.1
390,076 - Psyr_0365 0.44 +2.0
390,076 - Psyr_0365 0.44 -0.0
390,076 - Psyr_0365 0.44 -0.2
390,417 + -0.6
390,495 + Psyr_0366 0.10 -0.2
390,495 + Psyr_0366 0.10 -0.2
390,620 + Psyr_0366 0.26 +1.1
390,621 - Psyr_0366 0.26 -1.2
390,621 - Psyr_0366 0.26 -1.9
390,659 + Psyr_0366 0.30 -0.3
390,722 + Psyr_0366 0.38 -0.9
390,976 + Psyr_0366 0.69 -0.4
391,094 + Psyr_0366 0.83 -0.1
391,094 + Psyr_0366 0.83 -0.7
391,094 + Psyr_0366 0.83 +0.1
391,095 - Psyr_0366 0.83 -1.2
391,095 - Psyr_0366 0.83 +0.3
391,095 - Psyr_0366 0.83 -0.3
391,232 - -0.5
391,284 + +0.1
391,284 + +1.0
391,284 + +0.3
391,284 + +1.5
391,284 + -1.1
391,285 - +0.5
391,285 - +0.5
391,285 - +0.8
391,287 - -0.7
391,287 - -0.2
391,287 - -0.2
391,290 + +2.1
391,290 + +0.1
391,290 + -1.2
391,291 - -0.4
391,291 - +1.1
391,291 - -0.3
391,292 + +1.1
391,293 - -0.9
391,294 + +0.0
391,301 + -0.6
391,352 + -0.1
391,579 + Psyr_0367 0.19 -1.4
391,579 + Psyr_0367 0.19 -0.2
391,579 + Psyr_0367 0.19 -0.6
391,579 + Psyr_0367 0.19 +0.2
391,579 + Psyr_0367 0.19 -0.2
391,580 - Psyr_0367 0.19 +1.8
391,580 - Psyr_0367 0.19 -2.3
391,580 - Psyr_0367 0.19 -0.7
391,580 - Psyr_0367 0.19 +1.4
391,580 - Psyr_0367 0.19 +1.1
391,580 - +0.1
391,580 - Psyr_0367 0.19 +0.8
391,636 + Psyr_0367 0.23 +0.3
391,636 + Psyr_0367 0.23 +0.1
391,636 + Psyr_0367 0.23 +0.3
391,636 + Psyr_0367 0.23 -0.3
391,636 + Psyr_0367 0.23 -0.5
391,636 + Psyr_0367 0.23 +1.1
391,636 + Psyr_0367 0.23 -0.4
391,637 - Psyr_0367 0.23 -0.7
391,637 - Psyr_0367 0.23 +0.4
391,637 - Psyr_0367 0.23 +0.6
391,637 - Psyr_0367 0.23 +0.3
391,637 - Psyr_0367 0.23 -2.2
391,637 - Psyr_0367 0.23 +0.1
391,637 - Psyr_0367 0.23 -0.3
391,684 + Psyr_0367 0.26 -0.3
391,684 + Psyr_0367 0.26 +0.7
391,685 - Psyr_0367 0.26 -1.4
391,798 + Psyr_0367 0.35 +1.1
391,798 + Psyr_0367 0.35 +0.5
391,798 + Psyr_0367 0.35 +0.5
391,799 - Psyr_0367 0.35 +0.1
391,799 - Psyr_0367 0.35 -0.3
391,799 - Psyr_0367 0.35 -1.7
391,799 - Psyr_0367 0.35 +2.7
391,851 + Psyr_0367 0.39 +1.4
391,870 + Psyr_0367 0.40 +1.4
391,870 + Psyr_0367 0.40 +1.1
391,870 + Psyr_0367 0.40 +0.2
391,871 - Psyr_0367 0.40 +0.5
391,871 - Psyr_0367 0.40 -0.6
391,871 - Psyr_0367 0.40 -0.9
391,871 - Psyr_0367 0.40 -0.5
391,935 - Psyr_0367 0.45 -0.4
391,973 + Psyr_0367 0.48 -0.1
391,973 + Psyr_0367 0.48 -0.9
391,974 - Psyr_0367 0.48 -1.2
392,092 + Psyr_0367 0.56 -0.0
392,093 - Psyr_0367 0.56 -1.5
392,196 - Psyr_0367 0.64 -1.9

Or see this region's nucleotide sequence