Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0323 and Psyr_0324 are separated by 788 nucleotides Psyr_0324 and Psyr_0325 are separated by 611 nucleotides
Psyr_0323: Psyr_0323 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase, at 340,076 to 341,305
_0323
Psyr_0324: Psyr_0324 - transcriptional regulator, AraC family, at 342,094 to 343,086
_0324
Psyr_0325: Psyr_0325 - General substrate transporter:TonB box, N-terminal, at 343,698 to 345,008
_0325
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 341.304 kb on - strand at 341.304 kb on - strand at 341.304 kb on - strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.321 kb on + strand at 341.322 kb on - strand at 341.359 kb on + strand at 341.395 kb on - strand at 341.395 kb on - strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.399 kb on - strand at 341.399 kb on - strand at 341.399 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.411 kb on - strand at 341.439 kb on - strand at 341.640 kb on - strand at 341.664 kb on - strand at 341.664 kb on - strand at 341.664 kb on - strand at 341.664 kb on - strand at 341.717 kb on + strand at 341.717 kb on + strand at 341.717 kb on + strand at 341.717 kb on + strand at 341.744 kb on - strand at 342.191 kb on + strand at 342.191 kb on + strand at 342.275 kb on + strand, within Psyr_0324 at 342.275 kb on + strand, within Psyr_0324 at 342.276 kb on - strand, within Psyr_0324 at 342.394 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.722 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.985 kb on + strand, within Psyr_0324 at 342.985 kb on + strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 343.032 kb on + strand at 343.033 kb on - strand at 343.276 kb on + strand at 343.276 kb on + strand at 343.276 kb on + strand at 343.278 kb on + strand at 343.279 kb on - strand at 343.279 kb on - strand at 343.298 kb on - strand at 343.425 kb on + strand at 343.425 kb on + strand at 343.494 kb on + strand at 343.529 kb on + strand at 343.563 kb on + strand at 343.612 kb on + strand at 343.676 kb on + strand at 343.677 kb on - strand at 343.682 kb on + strand at 343.683 kb on - strand at 343.683 kb on - strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.834 kb on - strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 341,304 - -0.2 341,304 - +1.3 341,304 - -0.4 341,317 + +1.6 341,317 + -0.4 341,317 + -0.2 341,317 + +0.0 341,317 + +0.9 341,317 + -1.4 341,318 - +0.4 341,318 - -1.1 341,318 - +0.6 341,318 - -0.5 341,318 - -0.9 341,318 - +2.8 341,318 - -0.7 341,321 + +1.2 341,322 - -1.4 341,359 + +0.2 341,395 - -0.0 341,395 - +0.6 341,398 + +0.1 341,398 + +0.6 341,398 + +0.5 341,398 + -0.3 341,398 + +1.2 341,398 + -0.4 341,399 - -0.8 341,399 - -0.2 341,399 - -2.2 341,404 - +0.7 341,404 - -0.5 341,404 - +0.4 341,404 - -1.0 341,404 - -0.9 341,404 - +0.2 341,411 - +1.2 341,439 - +0.6 341,640 - -0.4 341,664 - +1.2 341,664 - +0.0 341,664 - -1.2 341,664 - +0.8 341,717 + -0.2 341,717 + -0.1 341,717 + +0.2 341,717 + -1.2 341,744 - -1.5 342,191 + +0.4 342,191 + -0.1 342,275 + Psyr_0324 0.18 +0.1 342,275 + Psyr_0324 0.18 +0.9 342,276 - Psyr_0324 0.18 +1.4 342,394 + Psyr_0324 0.30 -0.8 342,643 + Psyr_0324 0.55 +0.9 342,643 + Psyr_0324 0.55 +0.7 342,643 + Psyr_0324 0.55 -0.5 342,643 + Psyr_0324 0.55 +1.0 342,643 + Psyr_0324 0.55 -0.2 342,643 + Psyr_0324 0.55 +1.2 342,643 + Psyr_0324 0.55 -1.7 342,647 + Psyr_0324 0.56 +0.5 342,647 + Psyr_0324 0.56 -0.1 342,647 + Psyr_0324 0.56 +0.5 342,647 + Psyr_0324 0.56 +1.4 342,647 + Psyr_0324 0.56 +2.5 342,647 + Psyr_0324 0.56 +0.2 342,647 + Psyr_0324 0.56 -0.4 342,647 + Psyr_0324 0.56 +1.3 342,647 + Psyr_0324 0.56 +0.8 342,648 - Psyr_0324 0.56 -1.2 342,648 - Psyr_0324 0.56 -0.8 342,648 - Psyr_0324 0.56 +0.2 342,648 - Psyr_0324 0.56 +0.1 342,648 - Psyr_0324 0.56 +0.5 342,648 - Psyr_0324 0.56 -0.7 342,722 + Psyr_0324 0.63 -1.3 342,784 + Psyr_0324 0.69 +0.6 342,784 + Psyr_0324 0.69 +0.6 342,784 + Psyr_0324 0.69 +0.2 342,784 + Psyr_0324 0.69 -0.5 342,785 - Psyr_0324 0.70 -0.5 342,785 - Psyr_0324 0.70 +1.3 342,785 - Psyr_0324 0.70 -0.4 342,831 + Psyr_0324 0.74 +1.3 342,831 + Psyr_0324 0.74 +0.1 342,831 + Psyr_0324 0.74 +0.5 342,832 - Psyr_0324 0.74 -0.2 342,832 - Psyr_0324 0.74 -1.0 342,832 - Psyr_0324 0.74 +0.0 342,832 - Psyr_0324 0.74 -0.2 342,832 - Psyr_0324 0.74 +1.4 342,985 + Psyr_0324 0.90 -1.1 342,985 + Psyr_0324 0.90 -0.4 342,986 - Psyr_0324 0.90 -0.6 342,986 - Psyr_0324 0.90 +1.2 342,986 - Psyr_0324 0.90 +0.4 343,032 + -0.2 343,033 - -0.2 343,276 + -0.5 343,276 + -1.4 343,276 + +1.8 343,278 + +1.4 343,279 - +0.6 343,279 - +0.0 343,298 - -0.5 343,425 + -1.7 343,425 + +0.3 343,494 + -0.8 343,529 + -2.5 343,563 + -0.6 343,612 + -0.6 343,676 + -1.6 343,677 - -1.1 343,682 + -0.2 343,683 - +0.9 343,683 - +1.2 343,705 + +0.4 343,705 + +1.2 343,705 + +2.2 343,705 + -0.2 343,705 + -1.2 343,706 - +0.8 343,706 - +0.2 343,706 - -0.7 343,706 - -0.4 343,706 - +0.2 343,761 + +0.2 343,761 + +0.4 343,761 + -0.6 343,761 + +0.1 343,762 - +0.8 343,762 - -0.2 343,762 - -0.2 343,762 - +0.1 343,762 - +0.7 343,762 - +0.8 343,834 - Psyr_0325 0.10 -0.8 343,893 + Psyr_0325 0.15 -0.3 343,893 + Psyr_0325 0.15 -0.2 343,893 + Psyr_0325 0.15 +0.1 343,894 - Psyr_0325 0.15 -0.2 343,894 - Psyr_0325 0.15 -0.0 343,894 - Psyr_0325 0.15 -1.0
Or see this region's nucleotide sequence