Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0278 and Psyr_0279 are separated by 38 nucleotides Psyr_0279 and Psyr_0280 are separated by 152 nucleotides Psyr_0280 and Psyr_0281 are separated by 307 nucleotides
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324
_0279
Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627
_0280
Psyr_0281: Psyr_0281 - ABC transporter, at 299,935 to 300,942
_0281
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.509 kb on - strand at 296.509 kb on - strand at 296.568 kb on - strand at 296.593 kb on + strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.629 kb on + strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.851 kb on + strand, within Psyr_0279 at 296.852 kb on - strand, within Psyr_0279 at 296.852 kb on - strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.871 kb on - strand, within Psyr_0279 at 297.404 kb on + strand at 297.404 kb on + strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.407 kb on - strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.571 kb on - strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.662 kb on - strand at 298.008 kb on + strand, within Psyr_0280 at 298.008 kb on + strand, within Psyr_0280 at 298.009 kb on - strand, within Psyr_0280 at 298.009 kb on - strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.147 kb on + strand, within Psyr_0280 at 298.273 kb on + strand, within Psyr_0280 at 298.349 kb on - strand, within Psyr_0280 at 298.483 kb on + strand, within Psyr_0280 at 298.484 kb on - strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.735 kb on + strand, within Psyr_0280 at 298.874 kb on + strand, within Psyr_0280 at 298.875 kb on - strand, within Psyr_0280 at 298.875 kb on - strand, within Psyr_0280 at 298.890 kb on - strand, within Psyr_0280 at 298.890 kb on - strand, within Psyr_0280 at 298.890 kb on - strand, within Psyr_0280 at 299.158 kb on + strand, within Psyr_0280 at 299.159 kb on - strand, within Psyr_0280 at 299.159 kb on - strand, within Psyr_0280 at 299.283 kb on - strand, within Psyr_0280 at 299.305 kb on + strand, within Psyr_0280 at 299.305 kb on + strand, within Psyr_0280 at 299.305 kb on + strand, within Psyr_0280 at 299.306 kb on - strand, within Psyr_0280 at 299.317 kb on + strand, within Psyr_0280 at 299.317 kb on + strand, within Psyr_0280 at 299.317 kb on + strand, within Psyr_0280 at 299.318 kb on - strand, within Psyr_0280 at 299.318 kb on - strand, within Psyr_0280 at 299.318 kb on - strand, within Psyr_0280 at 299.318 kb on - strand, within Psyr_0280 at 299.363 kb on + strand, within Psyr_0280 at 299.639 kb on + strand at 299.639 kb on + strand at 299.639 kb on + strand at 299.639 kb on + strand at 299.640 kb on - strand at 299.674 kb on + strand at 299.674 kb on + strand at 299.748 kb on - strand at 299.748 kb on - strand at 299.758 kb on + strand at 299.758 kb on + strand at 299.758 kb on + strand at 299.758 kb on + strand at 299.759 kb on - strand at 299.759 kb on - strand at 299.759 kb on - strand at 299.779 kb on + strand at 299.779 kb on + strand at 299.780 kb on - strand at 299.805 kb on - strand at 299.808 kb on + strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.809 kb on - strand at 299.816 kb on - strand at 299.870 kb on + strand at 299.950 kb on - strand at 299.987 kb on + strand at 300.069 kb on + strand, within Psyr_0281
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 296,506 + +0.7 296,506 + +0.9 296,506 + -0.3 296,506 + +0.2 296,506 + +3.0 296,506 + +0.2 296,507 - +0.9 296,507 - -0.1 296,507 - +0.3 296,507 - +0.4 296,507 - -0.1 296,508 + +0.5 296,508 + +0.4 296,508 + -0.8 296,508 + -0.8 296,508 + +1.5 296,509 - -0.4 296,509 - +1.0 296,568 - +1.2 296,593 + +0.1 296,594 - +1.3 296,594 - +0.4 296,594 - -1.3 296,629 + +0.3 296,630 - +0.1 296,630 - -0.1 296,630 - -0.3 296,630 - +1.0 296,851 + Psyr_0279 0.34 +0.2 296,852 - Psyr_0279 0.34 +0.1 296,852 - Psyr_0279 0.34 -0.3 296,870 + Psyr_0279 0.37 +0.8 296,870 + Psyr_0279 0.37 +0.0 296,870 + Psyr_0279 0.37 -1.2 296,870 + Psyr_0279 0.37 +0.4 296,870 + Psyr_0279 0.37 +0.2 296,870 + Psyr_0279 0.37 +0.1 296,870 + Psyr_0279 0.37 +0.7 296,871 - Psyr_0279 0.37 +0.4 297,404 + +0.8 297,404 + -0.1 297,405 - -0.2 297,405 - +0.6 297,405 - +0.2 297,405 - +2.0 297,407 - -0.2 297,464 + -0.4 297,464 + +1.0 297,464 + +1.5 297,464 + -0.1 297,464 + +1.2 297,465 - -1.2 297,465 - +1.7 297,465 - -1.3 297,465 - +0.0 297,465 - +0.5 297,465 - -1.0 297,571 - -0.4 297,661 + +0.0 297,661 + +0.2 297,661 + +1.0 297,661 + -0.3 297,661 + +0.5 297,662 - +0.2 298,008 + Psyr_0280 0.25 -0.4 298,008 + Psyr_0280 0.25 -1.8 298,009 - Psyr_0280 0.25 +0.2 298,009 - Psyr_0280 0.25 -1.1 298,114 + Psyr_0280 0.30 +0.7 298,114 + Psyr_0280 0.30 +0.3 298,114 + Psyr_0280 0.30 +0.4 298,115 - Psyr_0280 0.30 -0.3 298,115 - Psyr_0280 0.30 -0.2 298,115 - Psyr_0280 0.30 +1.3 298,115 - Psyr_0280 0.30 +1.3 298,147 + Psyr_0280 0.31 +1.6 298,273 + Psyr_0280 0.37 +1.1 298,349 - Psyr_0280 0.41 -2.0 298,483 + Psyr_0280 0.47 +1.9 298,484 - Psyr_0280 0.47 +1.4 298,582 + Psyr_0280 0.51 -0.2 298,582 + Psyr_0280 0.51 -0.2 298,582 + Psyr_0280 0.51 -1.6 298,582 + Psyr_0280 0.51 +0.9 298,582 + Psyr_0280 0.51 +0.8 298,582 + Psyr_0280 0.51 +0.9 298,582 + Psyr_0280 0.51 -0.4 298,583 - Psyr_0280 0.51 +0.2 298,583 - Psyr_0280 0.51 -1.6 298,583 - Psyr_0280 0.51 +0.2 298,583 - Psyr_0280 0.51 +0.3 298,583 - Psyr_0280 0.51 -1.0 298,583 - Psyr_0280 0.51 +0.9 298,583 - Psyr_0280 0.51 -2.4 298,583 - Psyr_0280 0.51 +0.3 298,714 - Psyr_0280 0.58 -0.2 298,714 - Psyr_0280 0.58 -0.7 298,714 - Psyr_0280 0.58 +0.3 298,714 - Psyr_0280 0.58 -0.0 298,735 + Psyr_0280 0.58 +0.8 298,874 + Psyr_0280 0.65 -2.0 298,875 - Psyr_0280 0.65 +0.9 298,875 - Psyr_0280 0.65 +0.0 298,890 - Psyr_0280 0.66 -0.1 298,890 - Psyr_0280 0.66 -0.7 298,890 - Psyr_0280 0.66 +1.2 299,158 + Psyr_0280 0.78 +1.3 299,159 - Psyr_0280 0.78 -0.6 299,159 - Psyr_0280 0.78 +0.5 299,283 - Psyr_0280 0.84 +0.4 299,305 + Psyr_0280 0.85 -0.4 299,305 + Psyr_0280 0.85 -0.2 299,305 + Psyr_0280 0.85 +0.3 299,306 - Psyr_0280 0.85 +0.7 299,317 + Psyr_0280 0.86 -0.4 299,317 + Psyr_0280 0.86 -0.2 299,317 + Psyr_0280 0.86 +0.6 299,318 - Psyr_0280 0.86 +0.5 299,318 - Psyr_0280 0.86 +0.0 299,318 - Psyr_0280 0.86 +0.4 299,318 - Psyr_0280 0.86 +0.3 299,363 + Psyr_0280 0.88 +0.3 299,639 + -0.4 299,639 + +0.6 299,639 + -3.4 299,639 + -0.3 299,640 - +0.5 299,674 + +0.0 299,674 + -1.1 299,748 - +0.6 299,748 - -0.5 299,758 + +0.8 299,758 + -0.0 299,758 + +1.0 299,758 + +1.6 299,759 - +0.2 299,759 - +0.3 299,759 - -1.3 299,779 + +0.6 299,779 + +0.3 299,780 - -0.6 299,805 - -1.6 299,808 + -0.7 299,809 - +0.9 299,809 - +0.0 299,809 - -0.6 299,809 - -0.5 299,809 - +0.0 299,809 - -0.1 299,809 - -0.1 299,809 - +0.2 299,816 - +0.3 299,870 + -1.1 299,950 - -1.1 299,987 + -0.1 300,069 + Psyr_0281 0.13 +0.9
Or see this region's nucleotide sequence