Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0275 and Psyr_0276 are separated by 67 nucleotides Psyr_0276 and Psyr_0277 overlap by 1 nucleotides Psyr_0277 and Psyr_0278 overlap by 8 nucleotides Psyr_0278 and Psyr_0279 are separated by 38 nucleotides
Psyr_0275: Psyr_0275 - Periplasmic solute binding protein, at 293,509 to 294,450
_0275
Psyr_0276: Psyr_0276 - zinc uptake regulation protein, putative, at 294,518 to 295,000
_0276
Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788
_0277
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324
_0279
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 294.238 kb on + strand, within Psyr_0275 at 294.239 kb on - strand, within Psyr_0275 at 294.239 kb on - strand, within Psyr_0275 at 294.248 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.273 kb on + strand, within Psyr_0275 at 294.312 kb on + strand, within Psyr_0275 at 294.328 kb on + strand, within Psyr_0275 at 294.329 kb on - strand, within Psyr_0275 at 294.436 kb on + strand at 294.437 kb on - strand at 294.463 kb on + strand at 294.464 kb on - strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.504 kb on + strand at 294.526 kb on + strand at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.976 kb on - strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.214 kb on - strand, within Psyr_0277 at 295.460 kb on + strand, within Psyr_0277 at 295.461 kb on - strand, within Psyr_0277 at 295.480 kb on + strand, within Psyr_0277 at 295.481 kb on - strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.776 kb on + strand at 295.776 kb on + strand at 295.776 kb on + strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.794 kb on + strand at 295.795 kb on - strand at 295.795 kb on - strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.877 kb on + strand, within Psyr_0278 at 295.877 kb on + strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.466 kb on + strand, within Psyr_0278 at 296.467 kb on - strand, within Psyr_0278 at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.509 kb on - strand at 296.509 kb on - strand at 296.568 kb on - strand at 296.593 kb on + strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.629 kb on + strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 294,238 + Psyr_0275 0.77 -0.5 294,239 - Psyr_0275 0.77 -0.3 294,239 - Psyr_0275 0.77 -0.5 294,248 - Psyr_0275 0.78 +0.3 294,270 - Psyr_0275 0.81 +0.1 294,270 - Psyr_0275 0.81 -0.0 294,270 - Psyr_0275 0.81 -0.6 294,273 + Psyr_0275 0.81 -0.2 294,312 + Psyr_0275 0.85 -0.2 294,328 + Psyr_0275 0.87 -1.4 294,329 - Psyr_0275 0.87 -0.1 294,436 + -0.5 294,437 - +0.4 294,463 + +0.2 294,464 - -1.3 294,485 + -0.3 294,485 + -0.4 294,485 + +0.9 294,485 + +1.1 294,485 + +0.6 294,485 + +0.4 294,485 + +0.2 294,485 + -0.0 294,486 - +0.8 294,486 - -1.8 294,486 - +0.0 294,486 - -0.2 294,486 - -0.1 294,486 - +1.2 294,504 + -0.4 294,526 + +0.2 294,598 - Psyr_0276 0.17 -0.4 294,598 - Psyr_0276 0.17 +1.0 294,598 - Psyr_0276 0.17 -0.7 294,683 + Psyr_0276 0.34 +0.0 294,683 + Psyr_0276 0.34 -0.9 294,976 - +0.4 295,016 + -0.8 295,016 + +0.5 295,016 + -1.1 295,016 + -3.3 295,017 - +0.8 295,017 - -0.4 295,017 - +0.9 295,213 + Psyr_0277 0.27 +0.5 295,213 + Psyr_0277 0.27 -1.3 295,213 + Psyr_0277 0.27 -0.2 295,213 + Psyr_0277 0.27 +0.8 295,213 + Psyr_0277 0.27 -0.2 295,214 - Psyr_0277 0.27 +0.9 295,460 + Psyr_0277 0.58 +0.6 295,461 - Psyr_0277 0.58 +0.7 295,480 + Psyr_0277 0.61 +1.3 295,481 - Psyr_0277 0.61 +0.8 295,681 + Psyr_0277 0.86 +0.6 295,681 + Psyr_0277 0.86 +1.4 295,681 + Psyr_0277 0.86 +0.3 295,681 + Psyr_0277 0.86 -0.6 295,681 + Psyr_0277 0.86 +0.2 295,682 - Psyr_0277 0.86 +0.4 295,682 - Psyr_0277 0.86 -0.1 295,682 - Psyr_0277 0.86 +0.9 295,682 - Psyr_0277 0.86 +0.4 295,682 - Psyr_0277 0.86 +0.4 295,682 - Psyr_0277 0.86 -1.1 295,776 + -0.0 295,776 + +0.5 295,776 + +0.0 295,777 - +0.0 295,777 - -0.5 295,794 + -0.1 295,795 - -0.8 295,795 - +0.0 295,799 + +0.8 295,799 + +0.9 295,799 + +0.3 295,800 - -1.0 295,800 - +0.9 295,800 - +0.2 295,800 - -0.6 295,800 - +1.2 295,800 - +0.1 295,800 - -0.2 295,800 - +0.3 295,800 - -0.5 295,800 - +0.0 295,877 + Psyr_0278 0.12 +0.8 295,877 + Psyr_0278 0.12 -1.0 295,878 - Psyr_0278 0.12 +0.2 295,878 - Psyr_0278 0.12 +0.6 295,878 - Psyr_0278 0.12 +0.3 295,878 - Psyr_0278 0.12 +0.6 296,278 + Psyr_0278 0.63 -0.6 296,278 + Psyr_0278 0.63 -1.1 296,278 + Psyr_0278 0.63 -0.8 296,278 + Psyr_0278 0.63 -0.8 296,278 + Psyr_0278 0.63 +0.7 296,279 - Psyr_0278 0.63 +0.3 296,279 - Psyr_0278 0.63 +0.1 296,279 - Psyr_0278 0.63 +0.1 296,356 + Psyr_0278 0.73 +0.4 296,356 + Psyr_0278 0.73 +0.9 296,356 + Psyr_0278 0.73 +0.3 296,356 + Psyr_0278 0.73 +0.2 296,357 - Psyr_0278 0.73 -0.6 296,357 - Psyr_0278 0.73 -0.1 296,466 + Psyr_0278 0.87 -0.0 296,467 - Psyr_0278 0.87 -0.5 296,506 + +0.7 296,506 + +0.9 296,506 + -0.3 296,506 + +0.2 296,506 + +3.0 296,506 + +0.2 296,507 - +0.9 296,507 - -0.1 296,507 - +0.3 296,507 - +0.4 296,507 - -0.1 296,508 + +0.5 296,508 + +0.4 296,508 + -0.8 296,508 + -0.8 296,508 + +1.5 296,509 - -0.4 296,509 - +1.0 296,568 - +1.2 296,593 + +0.1 296,594 - +1.3 296,594 - +0.4 296,594 - -1.3 296,629 + +0.3 296,630 - +0.1 296,630 - -0.1 296,630 - -0.3 296,630 - +1.0
Or see this region's nucleotide sequence