Experiment: KB with Carbenicillin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0174 and Psyr_0175 are separated by 90 nucleotides Psyr_0175 and Psyr_0176 are separated by 216 nucleotides Psyr_0176 and Psyr_0177 are separated by 182 nucleotides
Psyr_0174: Psyr_0174 - Sodium:dicarboxylate symporter, at 188,229 to 189,560
_0174
Psyr_0175: Psyr_0175 - conserved hypothetical protein, at 189,651 to 189,926
_0175
Psyr_0176: Psyr_0176 - conserved hypothetical protein, at 190,143 to 190,391
_0176
Psyr_0177: Psyr_0177 - adenylate cyclase, at 190,574 to 193,420
_0177
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 189.180 kb on + strand, within Psyr_0174 at 189.180 kb on + strand, within Psyr_0174 at 189.180 kb on + strand, within Psyr_0174 at 189.447 kb on - strand at 189.447 kb on - strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.569 kb on - strand at 189.569 kb on - strand at 189.635 kb on + strand at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.798 kb on - strand, within Psyr_0175 at 189.798 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.983 kb on + strand at 189.983 kb on + strand at 189.983 kb on + strand at 189.984 kb on - strand at 189.984 kb on - strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.123 kb on - strand at 190.138 kb on + strand at 190.138 kb on + strand at 190.139 kb on - strand at 190.139 kb on - strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.149 kb on + strand at 190.149 kb on + strand at 190.149 kb on + strand at 190.149 kb on + strand at 190.150 kb on - strand at 190.152 kb on - strand at 190.235 kb on - strand, within Psyr_0176 at 190.235 kb on - strand, within Psyr_0176 at 190.235 kb on - strand, within Psyr_0176 at 190.437 kb on + strand at 190.477 kb on - strand at 190.477 kb on - strand at 190.536 kb on - strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.773 kb on - strand at 190.865 kb on + strand, within Psyr_0177 at 190.865 kb on + strand, within Psyr_0177 at 190.866 kb on - strand, within Psyr_0177 at 190.866 kb on - strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.157 kb on - strand, within Psyr_0177 at 191.157 kb on - strand, within Psyr_0177 at 191.157 kb on - strand, within Psyr_0177 at 191.188 kb on + strand, within Psyr_0177 at 191.189 kb on - strand, within Psyr_0177 at 191.234 kb on + strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.259 kb on - strand, within Psyr_0177 at 191.259 kb on - strand, within Psyr_0177 at 191.259 kb on - strand, within Psyr_0177 at 191.361 kb on + strand, within Psyr_0177
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 250 ug/ml remove 189,180 + Psyr_0174 0.71 +3.0 189,180 + Psyr_0174 0.71 +0.5 189,180 + Psyr_0174 0.71 -0.1 189,447 - -0.7 189,447 - +0.3 189,468 + -0.1 189,468 + -2.3 189,468 + +0.2 189,468 + -0.1 189,468 + +1.2 189,468 + -0.5 189,468 + -0.8 189,468 + +0.7 189,468 + +0.6 189,468 + +0.7 189,468 + +0.5 189,468 + +0.1 189,469 - -0.5 189,469 - +0.4 189,469 - +0.7 189,469 - +0.2 189,469 - +0.0 189,469 - +1.2 189,469 - +0.6 189,469 - -0.4 189,469 - -0.7 189,469 - -2.3 189,469 - +2.2 189,469 - -0.4 189,469 - +0.4 189,469 - +0.1 189,469 - -0.1 189,469 - -0.9 189,469 - +0.1 189,568 + +0.4 189,568 + +0.0 189,568 + +1.0 189,568 + +0.6 189,569 - +1.2 189,569 - -0.4 189,635 + -1.4 189,783 + Psyr_0175 0.48 -0.4 189,783 + Psyr_0175 0.48 -0.2 189,783 + Psyr_0175 0.48 +0.8 189,783 + Psyr_0175 0.48 +1.8 189,783 + Psyr_0175 0.48 -0.3 189,783 + Psyr_0175 0.48 +0.2 189,783 + Psyr_0175 0.48 -1.0 189,783 + Psyr_0175 0.48 -1.1 189,783 + Psyr_0175 0.48 -0.6 189,783 + Psyr_0175 0.48 -0.3 189,784 - Psyr_0175 0.48 -1.0 189,784 - Psyr_0175 0.48 -1.0 189,784 - Psyr_0175 0.48 +1.1 189,784 - Psyr_0175 0.48 +0.2 189,784 - Psyr_0175 0.48 +2.0 189,798 - Psyr_0175 0.53 +0.5 189,798 - Psyr_0175 0.53 +0.1 189,880 - Psyr_0175 0.83 -1.2 189,880 - Psyr_0175 0.83 +0.4 189,880 - Psyr_0175 0.83 +0.7 189,954 + -0.4 189,954 + +1.6 189,954 + +0.2 189,954 + +0.7 189,954 + +1.2 189,954 + +0.7 189,954 + +0.7 189,954 + +1.4 189,954 + +0.9 189,954 + -1.9 189,954 + +0.2 189,954 + -0.6 189,954 + +0.4 189,954 + +3.0 189,954 + -0.2 189,954 + -0.5 189,955 - -0.5 189,955 - -0.3 189,955 - -0.7 189,955 - -0.3 189,955 - -1.6 189,955 - -2.1 189,955 - -0.5 189,955 - +0.2 189,955 - -0.3 189,955 - +0.0 189,955 - +0.2 189,955 - -0.6 189,955 - -0.8 189,955 - +1.0 189,955 - +0.0 189,956 + -1.2 189,956 + +0.8 189,956 + -0.4 189,956 + -0.1 189,956 + +0.1 189,956 + +0.4 189,956 + -1.1 189,956 + -0.2 189,956 + -0.8 189,956 + +0.1 189,956 + +0.5 189,956 + -0.2 189,956 + +0.5 189,956 + +0.4 189,956 + -0.1 189,956 + +0.6 189,956 + +1.9 189,956 + -1.4 189,957 - -0.7 189,957 - +0.6 189,957 - +0.3 189,957 - +1.0 189,957 - -0.8 189,957 - -0.5 189,957 - -1.4 189,957 - -0.6 189,957 - -0.2 189,957 - -0.5 189,957 - -1.0 189,957 - +0.7 189,957 - -0.3 189,957 - -0.7 189,957 - +0.4 189,957 - -2.1 189,957 - -0.5 189,957 - +0.0 189,957 - +0.0 189,957 - +0.8 189,957 - +1.6 189,957 - +0.2 189,957 - +0.1 189,957 - -1.1 189,957 - -0.3 189,983 + +1.2 189,983 + -1.0 189,983 + +0.5 189,984 - +0.9 189,984 - +1.2 190,116 + -0.1 190,116 + -0.0 190,116 + +0.2 190,116 + -0.3 190,116 + -0.2 190,117 - -1.1 190,117 - +0.8 190,117 - -0.2 190,117 - +1.5 190,117 - +0.3 190,119 + +0.1 190,119 + +0.5 190,119 + -0.5 190,120 - -0.4 190,120 - -1.4 190,120 - -0.8 190,120 - +0.4 190,123 - +0.6 190,138 + -0.8 190,138 + -0.1 190,139 - +0.8 190,139 - +1.0 190,142 + -0.3 190,142 + -0.4 190,142 + +0.0 190,142 + +0.1 190,142 + -0.7 190,142 + +0.8 190,142 + +0.8 190,142 + +1.4 190,142 + +0.2 190,142 + +0.6 190,142 + +0.7 190,142 + -1.6 190,143 - -0.8 190,143 - +0.1 190,143 - +0.6 190,143 - -1.1 190,143 - -0.2 190,143 - -0.4 190,143 - -0.2 190,143 - -0.4 190,143 - -0.9 190,143 - +0.7 190,143 - +1.2 190,149 + +0.9 190,149 + +0.7 190,149 + +0.5 190,149 + -0.0 190,150 - -1.3 190,152 - +0.7 190,235 - Psyr_0176 0.37 -0.4 190,235 - Psyr_0176 0.37 +0.7 190,235 - Psyr_0176 0.37 -0.2 190,437 + -0.4 190,477 - +1.8 190,477 - +0.6 190,536 - +1.0 190,696 + +0.2 190,696 + +0.8 190,696 + -0.3 190,696 + +0.5 190,696 + +1.0 190,696 + -0.2 190,696 + +0.1 190,697 - -1.6 190,697 - +0.3 190,697 - -0.7 190,697 - -0.1 190,697 - -1.6 190,697 - +0.3 190,697 - +0.0 190,697 - +0.0 190,697 - +0.9 190,773 - -0.2 190,865 + Psyr_0177 0.10 +0.3 190,865 + Psyr_0177 0.10 -1.8 190,866 - Psyr_0177 0.10 -0.0 190,866 - Psyr_0177 0.10 +0.4 191,156 + Psyr_0177 0.20 +0.5 191,157 - Psyr_0177 0.20 +1.6 191,157 - Psyr_0177 0.20 -1.2 191,157 - Psyr_0177 0.20 +0.1 191,188 + Psyr_0177 0.22 +0.9 191,189 - Psyr_0177 0.22 +0.9 191,234 + Psyr_0177 0.23 -0.4 191,235 - Psyr_0177 0.23 -0.5 191,235 - Psyr_0177 0.23 -0.4 191,235 - Psyr_0177 0.23 -0.9 191,235 - Psyr_0177 0.23 +0.4 191,235 - Psyr_0177 0.23 +0.3 191,235 - Psyr_0177 0.23 -0.4 191,235 - Psyr_0177 0.23 +0.2 191,249 + Psyr_0177 0.24 +0.5 191,249 + Psyr_0177 0.24 +0.2 191,249 + Psyr_0177 0.24 -0.1 191,249 + Psyr_0177 0.24 -0.9 191,249 + Psyr_0177 0.24 -0.1 191,250 - Psyr_0177 0.24 -0.5 191,250 - Psyr_0177 0.24 -0.8 191,250 - Psyr_0177 0.24 +0.7 191,250 - Psyr_0177 0.24 +0.2 191,258 + Psyr_0177 0.24 +0.3 191,258 + Psyr_0177 0.24 -1.4 191,258 + Psyr_0177 0.24 +0.4 191,258 + Psyr_0177 0.24 -2.2 191,258 + Psyr_0177 0.24 -0.2 191,258 + Psyr_0177 0.24 -0.8 191,259 - Psyr_0177 0.24 -0.8 191,259 - Psyr_0177 0.24 -0.4 191,259 - Psyr_0177 0.24 -0.4 191,361 + Psyr_0177 0.28 +0.4
Or see this region's nucleotide sequence