Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_514

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_513 and Pf6N2E2_514 overlap by 4 nucleotidesPf6N2E2_514 and Pf6N2E2_515 are separated by 30 nucleotides Pf6N2E2_513 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 582,290 to 583,183 _513 Pf6N2E2_514 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data), at 583,180 to 583,989 _514 Pf6N2E2_515 - malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data), at 584,020 to 585,522 _515 Position (kb) 583 584Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 582.263 kb on + strandat 582.263 kb on + strandat 582.264 kb on - strandat 582.264 kb on - strandat 582.264 kb on - strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.473 kb on + strand, within Pf6N2E2_513at 582.501 kb on - strand, within Pf6N2E2_513at 582.735 kb on + strand, within Pf6N2E2_513at 582.747 kb on - strand, within Pf6N2E2_513at 582.747 kb on - strand, within Pf6N2E2_513at 582.767 kb on + strand, within Pf6N2E2_513at 582.768 kb on - strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 583.064 kb on + strand, within Pf6N2E2_513at 583.107 kb on + strandat 583.108 kb on - strandat 583.118 kb on + strandat 583.118 kb on + strandat 583.118 kb on + strandat 583.118 kb on + strandat 583.119 kb on - strandat 583.119 kb on - strandat 583.140 kb on - strandat 583.249 kb on + strandat 583.249 kb on + strandat 583.249 kb on + strandat 583.250 kb on - strandat 583.250 kb on - strandat 583.435 kb on + strand, within Pf6N2E2_514at 583.436 kb on - strand, within Pf6N2E2_514at 583.490 kb on + strand, within Pf6N2E2_514at 583.491 kb on - strand, within Pf6N2E2_514at 583.534 kb on + strand, within Pf6N2E2_514at 583.535 kb on - strand, within Pf6N2E2_514at 583.535 kb on - strand, within Pf6N2E2_514at 583.604 kb on - strand, within Pf6N2E2_514at 583.750 kb on + strand, within Pf6N2E2_514at 583.750 kb on + strandat 583.751 kb on - strand, within Pf6N2E2_514at 583.751 kb on - strand, within Pf6N2E2_514at 583.798 kb on + strand, within Pf6N2E2_514at 583.798 kb on + strand, within Pf6N2E2_514at 583.799 kb on - strand, within Pf6N2E2_514at 583.799 kb on - strand, within Pf6N2E2_514at 583.906 kb on + strand, within Pf6N2E2_514at 583.907 kb on - strand, within Pf6N2E2_514at 583.907 kb on - strand, within Pf6N2E2_514at 583.909 kb on + strandat 584.003 kb on + strandat 584.047 kb on + strandat 584.047 kb on + strandat 584.048 kb on - strandat 584.048 kb on - strandat 584.048 kb on - strandat 584.722 kb on + strand, within Pf6N2E2_515at 584.722 kb on + strand, within Pf6N2E2_515at 584.722 kb on + strand, within Pf6N2E2_515at 584.722 kb on + strand, within Pf6N2E2_515at 584.723 kb on - strand, within Pf6N2E2_515at 584.723 kb on - strand, within Pf6N2E2_515

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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582,263 + +3.2
582,263 + +0.9
582,264 - -3.4
582,264 - -2.0
582,264 - -2.6
582,275 + +2.2
582,275 + -0.1
582,275 + +1.8
582,275 + +1.5
582,275 + +1.9
582,275 + +1.7
582,275 + +2.1
582,276 - -1.2
582,276 - -2.2
582,276 - -2.8
582,276 - -2.4
582,276 - +2.1
582,276 - -0.9
582,473 + Pf6N2E2_513 0.20 -4.4
582,501 - Pf6N2E2_513 0.24 -1.2
582,735 + Pf6N2E2_513 0.50 -0.2
582,747 - Pf6N2E2_513 0.51 -4.0
582,747 - Pf6N2E2_513 0.51 -3.1
582,767 + Pf6N2E2_513 0.53 -2.1
582,768 - Pf6N2E2_513 0.53 -3.6
582,851 + Pf6N2E2_513 0.63 -2.9
582,851 + Pf6N2E2_513 0.63 -1.4
582,851 + Pf6N2E2_513 0.63 -1.1
582,851 + Pf6N2E2_513 0.63 -0.1
582,851 + Pf6N2E2_513 0.63 -1.4
582,852 - Pf6N2E2_513 0.63 -3.9
582,852 - Pf6N2E2_513 0.63 -2.6
582,852 - Pf6N2E2_513 0.63 -2.8
582,852 - Pf6N2E2_513 0.63 -3.3
582,852 - Pf6N2E2_513 0.63 -1.5
582,852 - Pf6N2E2_513 0.63 -3.8
582,852 - Pf6N2E2_513 0.63 -4.0
583,064 + Pf6N2E2_513 0.87 -1.3
583,107 + -1.7
583,108 - -2.4
583,118 + -1.2
583,118 + -1.9
583,118 + -3.2
583,118 + -2.8
583,119 - -3.7
583,119 - -0.8
583,140 - -0.5
583,249 + -0.6
583,249 + -1.2
583,249 + -1.5
583,250 - +0.1
583,250 - -3.2
583,435 + Pf6N2E2_514 0.31 -2.8
583,436 - Pf6N2E2_514 0.32 -3.6
583,490 + Pf6N2E2_514 0.38 -4.0
583,491 - Pf6N2E2_514 0.38 -3.1
583,534 + Pf6N2E2_514 0.44 -3.2
583,535 - Pf6N2E2_514 0.44 -1.1
583,535 - Pf6N2E2_514 0.44 -2.5
583,604 - Pf6N2E2_514 0.52 -3.1
583,750 + Pf6N2E2_514 0.70 -4.4
583,750 + +0.1
583,751 - Pf6N2E2_514 0.70 -1.9
583,751 - Pf6N2E2_514 0.70 -2.2
583,798 + Pf6N2E2_514 0.76 -2.5
583,798 + Pf6N2E2_514 0.76 -2.4
583,799 - Pf6N2E2_514 0.76 -3.4
583,799 - Pf6N2E2_514 0.76 -3.6
583,906 + Pf6N2E2_514 0.90 -2.5
583,907 - Pf6N2E2_514 0.90 -2.1
583,907 - Pf6N2E2_514 0.90 -0.9
583,909 + -4.2
584,003 + -1.8
584,047 + -4.2
584,047 + -3.4
584,048 - -2.9
584,048 - -3.1
584,048 - -4.0
584,722 + Pf6N2E2_515 0.47 -2.1
584,722 + Pf6N2E2_515 0.47 -2.5
584,722 + Pf6N2E2_515 0.47 -2.2
584,722 + Pf6N2E2_515 0.47 -1.5
584,723 - Pf6N2E2_515 0.47 -4.2
584,723 - Pf6N2E2_515 0.47 -4.0

Or see this region's nucleotide sequence