Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3066

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3064 and Pf6N2E2_3065 overlap by 1 nucleotidesPf6N2E2_3065 and Pf6N2E2_3066 are separated by 13 nucleotidesPf6N2E2_3066 and Pf6N2E2_3067 overlap by 4 nucleotidesPf6N2E2_3067 and Pf6N2E2_3068 are separated by 213 nucleotides Pf6N2E2_3064 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,551,349 to 3,552,155 _3064 Pf6N2E2_3065 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,552,155 to 3,552,910 _3065 Pf6N2E2_3066 - Ribosome recycling factor, at 3,552,924 to 3,553,481 _3066 Pf6N2E2_3067 - Uridine monophosphate kinase (EC 2.7.4.22), at 3,553,478 to 3,554,221 _3067 Pf6N2E2_3068 - Translation elongation factor Ts, at 3,554,435 to 3,555,301 _3068 Position (kb) 3552 3553 3554Strain fitness (log2 ratio) -2 -1 0 1at 3552.926 kb on - strandat 3552.926 kb on - strandat 3552.928 kb on - strandat 3552.928 kb on - strandat 3554.284 kb on - strandat 3554.289 kb on - strandat 3554.329 kb on - strandat 3554.437 kb on - strandat 3554.437 kb on - strandat 3554.437 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
3,552,926 - +1.3
3,552,926 - +0.2
3,552,928 - +0.1
3,552,928 - +0.3
3,554,284 - -2.0
3,554,289 - +0.0
3,554,329 - +0.8
3,554,437 - -0.3
3,554,437 - +0.1
3,554,437 - -1.3

Or see this region's nucleotide sequence