Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1838

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1837 and Pf6N2E2_1838 are separated by 10 nucleotidesPf6N2E2_1838 and Pf6N2E2_1839 overlap by 1 nucleotidesPf6N2E2_1839 and Pf6N2E2_1840 overlap by 4 nucleotides Pf6N2E2_1837 - Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10), at 2,175,429 to 2,176,907 _1837 Pf6N2E2_1838 - 6-hexanolactone hydrolase, at 2,176,918 to 2,177,823 _1838 Pf6N2E2_1839 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-), at 2,177,823 to 2,178,557 _1839 Pf6N2E2_1840 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,178,554 to 2,179,366 _1840 Position (kb) 2176 2177 2178Strain fitness (log2 ratio) -2 -1 0 1at 2176.008 kb on + strand, within Pf6N2E2_1837at 2176.331 kb on - strand, within Pf6N2E2_1837at 2176.606 kb on + strand, within Pf6N2E2_1837at 2176.607 kb on - strand, within Pf6N2E2_1837at 2176.754 kb on + strand, within Pf6N2E2_1837at 2176.754 kb on + strand, within Pf6N2E2_1837at 2176.877 kb on - strandat 2176.924 kb on + strandat 2176.925 kb on - strandat 2177.029 kb on + strand, within Pf6N2E2_1838at 2177.201 kb on + strand, within Pf6N2E2_1838at 2177.267 kb on + strand, within Pf6N2E2_1838at 2177.456 kb on - strand, within Pf6N2E2_1838at 2177.456 kb on - strand, within Pf6N2E2_1838at 2177.603 kb on + strand, within Pf6N2E2_1838at 2177.792 kb on - strandat 2178.115 kb on + strand, within Pf6N2E2_1839at 2178.225 kb on + strand, within Pf6N2E2_1839at 2178.254 kb on - strand, within Pf6N2E2_1839at 2178.254 kb on - strand, within Pf6N2E2_1839at 2178.302 kb on - strand, within Pf6N2E2_1839at 2178.435 kb on - strand, within Pf6N2E2_1839at 2178.500 kb on + strandat 2178.707 kb on - strand, within Pf6N2E2_1840

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,176,008 + Pf6N2E2_1837 0.39 -0.8
2,176,331 - Pf6N2E2_1837 0.61 -0.2
2,176,606 + Pf6N2E2_1837 0.80 -2.4
2,176,607 - Pf6N2E2_1837 0.80 -0.9
2,176,754 + Pf6N2E2_1837 0.90 +0.9
2,176,754 + Pf6N2E2_1837 0.90 -0.0
2,176,877 - +0.5
2,176,924 + -0.1
2,176,925 - -0.2
2,177,029 + Pf6N2E2_1838 0.12 -0.9
2,177,201 + Pf6N2E2_1838 0.31 +0.2
2,177,267 + Pf6N2E2_1838 0.39 +1.2
2,177,456 - Pf6N2E2_1838 0.59 -0.6
2,177,456 - Pf6N2E2_1838 0.59 -0.6
2,177,603 + Pf6N2E2_1838 0.76 -2.6
2,177,792 - -0.4
2,178,115 + Pf6N2E2_1839 0.40 +0.5
2,178,225 + Pf6N2E2_1839 0.55 +0.4
2,178,254 - Pf6N2E2_1839 0.59 +0.1
2,178,254 - Pf6N2E2_1839 0.59 +0.8
2,178,302 - Pf6N2E2_1839 0.65 +0.4
2,178,435 - Pf6N2E2_1839 0.83 +0.2
2,178,500 + +0.2
2,178,707 - Pf6N2E2_1840 0.19 -0.2

Or see this region's nucleotide sequence