Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5601 and Pf1N1B4_5602 are separated by 117 nucleotides Pf1N1B4_5602 and Pf1N1B4_5603 are separated by 385 nucleotides
Pf1N1B4_5601 - FIG00966546: hypothetical protein, at 23,629 to 24,966
_5601
Pf1N1B4_5602 - 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46), at 25,084 to 26,346
_5602
Pf1N1B4_5603 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 26,732 to 27,931
_5603
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.128 kb on + strand, within Pf1N1B4_5601 at 24.227 kb on + strand, within Pf1N1B4_5601 at 24.227 kb on + strand, within Pf1N1B4_5601 at 24.228 kb on - strand, within Pf1N1B4_5601 at 24.333 kb on - strand, within Pf1N1B4_5601 at 24.533 kb on + strand, within Pf1N1B4_5601 at 24.533 kb on + strand, within Pf1N1B4_5601 at 24.534 kb on - strand, within Pf1N1B4_5601 at 24.584 kb on + strand, within Pf1N1B4_5601 at 24.585 kb on - strand, within Pf1N1B4_5601 at 24.737 kb on + strand, within Pf1N1B4_5601 at 24.737 kb on + strand at 24.738 kb on - strand, within Pf1N1B4_5601 at 24.738 kb on - strand, within Pf1N1B4_5601 at 24.738 kb on - strand, within Pf1N1B4_5601 at 24.966 kb on + strand at 25.073 kb on + strand at 25.093 kb on - strand at 25.265 kb on + strand, within Pf1N1B4_5602 at 25.266 kb on - strand, within Pf1N1B4_5602 at 25.326 kb on - strand, within Pf1N1B4_5602 at 25.613 kb on + strand, within Pf1N1B4_5602 at 25.614 kb on - strand, within Pf1N1B4_5602 at 25.661 kb on + strand, within Pf1N1B4_5602 at 25.667 kb on + strand, within Pf1N1B4_5602 at 25.688 kb on + strand, within Pf1N1B4_5602 at 25.689 kb on - strand, within Pf1N1B4_5602 at 25.758 kb on - strand, within Pf1N1B4_5602 at 25.770 kb on - strand, within Pf1N1B4_5602 at 25.848 kb on - strand, within Pf1N1B4_5602 at 25.848 kb on - strand, within Pf1N1B4_5602 at 25.941 kb on + strand, within Pf1N1B4_5602 at 26.536 kb on + strand at 26.560 kb on - strand at 26.667 kb on - strand at 26.689 kb on + strand at 26.689 kb on + strand at 26.689 kb on + strand at 26.757 kb on - strand at 26.887 kb on + strand, within Pf1N1B4_5603 at 26.892 kb on + strand, within Pf1N1B4_5603 at 26.892 kb on + strand, within Pf1N1B4_5603 at 26.892 kb on + strand at 26.955 kb on + strand, within Pf1N1B4_5603 at 26.955 kb on + strand, within Pf1N1B4_5603 at 27.101 kb on + strand, within Pf1N1B4_5603 at 27.107 kb on + strand at 27.107 kb on + strand, within Pf1N1B4_5603 at 27.146 kb on + strand, within Pf1N1B4_5603 at 27.147 kb on - strand, within Pf1N1B4_5603 at 27.150 kb on + strand, within Pf1N1B4_5603 at 27.151 kb on - strand, within Pf1N1B4_5603 at 27.302 kb on + strand, within Pf1N1B4_5603 at 27.302 kb on + strand at 27.302 kb on + strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 24,128 + Pf1N1B4_5601 0.37 -1.0 24,227 + Pf1N1B4_5601 0.45 -0.5 24,227 + Pf1N1B4_5601 0.45 -0.6 24,228 - Pf1N1B4_5601 0.45 +0.8 24,333 - Pf1N1B4_5601 0.53 +0.0 24,533 + Pf1N1B4_5601 0.68 +0.2 24,533 + Pf1N1B4_5601 0.68 +1.8 24,534 - Pf1N1B4_5601 0.68 +0.1 24,584 + Pf1N1B4_5601 0.71 -0.2 24,585 - Pf1N1B4_5601 0.71 +0.6 24,737 + Pf1N1B4_5601 0.83 +0.2 24,737 + +0.1 24,738 - Pf1N1B4_5601 0.83 +0.2 24,738 - Pf1N1B4_5601 0.83 +1.2 24,738 - Pf1N1B4_5601 0.83 -0.8 24,966 + -0.4 25,073 + -0.8 25,093 - +0.6 25,265 + Pf1N1B4_5602 0.14 +0.3 25,266 - Pf1N1B4_5602 0.14 -0.4 25,326 - Pf1N1B4_5602 0.19 -0.6 25,613 + Pf1N1B4_5602 0.42 -0.2 25,614 - Pf1N1B4_5602 0.42 -0.8 25,661 + Pf1N1B4_5602 0.46 -1.5 25,667 + Pf1N1B4_5602 0.46 -2.3 25,688 + Pf1N1B4_5602 0.48 -0.6 25,689 - Pf1N1B4_5602 0.48 -1.0 25,758 - Pf1N1B4_5602 0.53 -0.4 25,770 - Pf1N1B4_5602 0.54 -1.2 25,848 - Pf1N1B4_5602 0.60 -1.8 25,848 - Pf1N1B4_5602 0.60 -0.2 25,941 + Pf1N1B4_5602 0.68 +0.0 26,536 + -0.8 26,560 - +0.6 26,667 - -0.8 26,689 + -0.2 26,689 + +0.0 26,689 + -1.8 26,757 - +1.2 26,887 + Pf1N1B4_5603 0.13 -0.5 26,892 + Pf1N1B4_5603 0.13 +0.1 26,892 + Pf1N1B4_5603 0.13 -0.1 26,892 + -0.8 26,955 + Pf1N1B4_5603 0.19 -1.5 26,955 + Pf1N1B4_5603 0.19 -0.1 27,101 + Pf1N1B4_5603 0.31 -0.9 27,107 + -0.5 27,107 + Pf1N1B4_5603 0.31 +0.2 27,146 + Pf1N1B4_5603 0.34 +0.3 27,147 - Pf1N1B4_5603 0.35 +0.8 27,150 + Pf1N1B4_5603 0.35 +0.0 27,151 - Pf1N1B4_5603 0.35 +1.1 27,302 + Pf1N1B4_5603 0.47 -0.8 27,302 + -0.2 27,302 + Pf1N1B4_5603 0.47 +1.8 27,303 - Pf1N1B4_5603 0.48 -0.9 27,303 - Pf1N1B4_5603 0.48 -0.4 27,303 - Pf1N1B4_5603 0.48 +1.1 27,303 - Pf1N1B4_5603 0.48 -0.0
Or see this region's nucleotide sequence