Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4485 and Pf1N1B4_4486 are separated by 264 nucleotides Pf1N1B4_4486 and Pf1N1B4_4487 are separated by 274 nucleotides
Pf1N1B4_4485 - membrane protein, putative, at 4,946,290 to 4,947,096
_4485
Pf1N1B4_4486 - Outer membrane protein (porin), at 4,947,361 to 4,948,545
_4486
Pf1N1B4_4487 - FIG00955631: hypothetical protein, at 4,948,820 to 4,949,983
_4487
Position (kb)
4947
4948
4949 Strain fitness (log2 ratio)
-2
-1
0
1 at 4946.548 kb on + strand, within Pf1N1B4_4485 at 4946.548 kb on + strand, within Pf1N1B4_4485 at 4946.548 kb on + strand, within Pf1N1B4_4485 at 4947.194 kb on - strand at 4947.194 kb on - strand at 4947.295 kb on + strand at 4947.296 kb on - strand at 4947.372 kb on + strand at 4947.372 kb on + strand at 4947.514 kb on + strand, within Pf1N1B4_4486 at 4947.514 kb on + strand at 4947.595 kb on + strand, within Pf1N1B4_4486 at 4947.596 kb on - strand, within Pf1N1B4_4486 at 4947.596 kb on - strand, within Pf1N1B4_4486 at 4947.596 kb on - strand, within Pf1N1B4_4486 at 4947.596 kb on - strand, within Pf1N1B4_4486 at 4948.084 kb on + strand at 4948.084 kb on + strand, within Pf1N1B4_4486 at 4948.292 kb on - strand, within Pf1N1B4_4486 at 4948.342 kb on + strand, within Pf1N1B4_4486 at 4948.456 kb on + strand at 4948.457 kb on - strand at 4948.457 kb on - strand at 4948.512 kb on + strand at 4948.512 kb on + strand at 4948.562 kb on + strand at 4948.563 kb on - strand at 4949.337 kb on - strand, within Pf1N1B4_4487 at 4949.358 kb on - strand, within Pf1N1B4_4487 at 4949.408 kb on - strand, within Pf1N1B4_4487
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,946,548 + Pf1N1B4_4485 0.32 -1.7 4,946,548 + Pf1N1B4_4485 0.32 +0.7 4,946,548 + Pf1N1B4_4485 0.32 -0.7 4,947,194 - -1.7 4,947,194 - +0.6 4,947,295 + -0.6 4,947,296 - +0.1 4,947,372 + -0.1 4,947,372 + -0.8 4,947,514 + Pf1N1B4_4486 0.13 -2.7 4,947,514 + -1.2 4,947,595 + Pf1N1B4_4486 0.20 -1.2 4,947,596 - Pf1N1B4_4486 0.20 -1.5 4,947,596 - Pf1N1B4_4486 0.20 -0.4 4,947,596 - Pf1N1B4_4486 0.20 -0.7 4,947,596 - Pf1N1B4_4486 0.20 -0.8 4,948,084 + -0.8 4,948,084 + Pf1N1B4_4486 0.61 +0.4 4,948,292 - Pf1N1B4_4486 0.79 -0.8 4,948,342 + Pf1N1B4_4486 0.83 -1.2 4,948,456 + +0.2 4,948,457 - +0.2 4,948,457 - +0.8 4,948,512 + +0.8 4,948,512 + +0.2 4,948,562 + +0.0 4,948,563 - -1.0 4,949,337 - Pf1N1B4_4487 0.44 -0.5 4,949,358 - Pf1N1B4_4487 0.46 -1.2 4,949,408 - Pf1N1B4_4487 0.51 -0.2
Or see this region's nucleotide sequence