Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15355

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,389,149	+				-0.7
3,389,160	+				-0.3
3,389,166	+				-1.0
3,389,166	+				-0.6
3,389,166	+				-1.1
3,389,166	+				-0.4
3,389,170	+				-0.2
3,389,170	+				-0.5
3,389,170	+				-0.8
3,389,170	+				-0.3
3,389,170	+				-0.3
3,389,170	+				-0.9
3,389,170	+				-0.1
3,389,170	+				+0.1
3,389,170	+				+0.9
3,389,170	+				-0.3
3,389,180	+				-1.4
3,389,180	+				-0.2
3,389,211	+				-0.4
3,389,211	+				-0.6
3,389,212	-				-0.6
3,389,228	+				-2.2
3,389,249	+				-1.0
3,389,249	+				+1.5
3,389,249	+				-0.5
3,389,249	+				-0.2
3,389,249	+				-0.1
3,389,249	+				+1.3
3,389,249	+				-1.1
3,389,250	-				-0.4
3,389,250	-				-0.7
3,389,250	-				-0.8
3,389,250	-				+0.6
3,389,250	-				-0.6
3,389,250	-				+0.1
3,389,250	-				+1.8
3,389,272	-				+0.1
3,389,272	-				-0.8
3,389,284	+				-0.0
3,389,284	+				-1.0
3,389,284	+				-0.6
3,389,285	-				+0.6
3,389,352	+				-1.0
3,389,352	+				-2.7
3,389,352	+				-0.9
3,389,352	+				-0.4
3,389,352	+				-0.9
3,389,352	+				+0.1
3,389,352	+				-1.0
3,389,352	+				+0.9
3,389,352	+				-1.0
3,389,352	+				-1.2
3,389,352	+				+0.7
3,389,352	+				-0.1
3,389,352	+				+0.2
3,389,352	+				-0.9
3,389,352	+				-0.4
3,389,352	+				-0.9
3,389,352	+				-1.2
3,389,352	+				-1.3
3,389,352	+				-0.1
3,389,353	-				+0.4
3,389,353	-				-0.3
3,389,353	-				-0.3
3,389,353	-				-0.0
3,389,353	-				+0.5
3,389,353	-				+1.0
3,389,353	-				-0.5
3,389,353	-				-0.8
3,389,353	-				-0.7
3,389,353	-				-0.4
3,389,353	-				-0.3
3,389,353	-				-1.0
3,389,353	-				-0.2
3,389,353	-				-1.7
3,389,353	-				-0.8
3,389,356	+				-0.5
3,389,356	+				+0.8
3,389,356	+				-0.4
3,389,356	+				-0.6
3,389,356	+				-0.6
3,389,356	+				-0.9
3,389,357	-				+0.5
3,389,357	-				+0.2
3,389,357	-				-0.3
3,389,357	-				-0.2
3,389,451	+				+0.5
3,389,451	+				-0.4
3,389,452	-				+0.1
3,389,452	-				-1.0
3,389,452	-				-0.3
3,389,461	+				+0.1
3,389,461	+				-0.6
3,389,461	+				-1.0
3,389,461	+				-0.0
3,389,461	+				+0.6
3,389,462	-				+0.8
3,389,462	-				+0.4
3,389,480	+				-0.2
3,389,480	+				-0.4
3,389,480	+				-0.4
3,389,480	+				-0.3
3,389,480	+				-0.8
3,389,480	+				+0.3
3,389,480	+				-1.1
3,389,480	+				+0.0
3,389,480	+				+0.4
3,389,480	+				+0.9
3,389,480	+				+0.2
3,389,481	-				+0.9
3,389,481	-				-0.5
3,389,481	-				-0.8
3,389,481	-				-0.7
3,389,481	-				+0.1
3,389,481	-				+0.2
3,389,481	-				-0.2
3,389,481	-				-0.4
3,389,481	-				-0.8
3,389,481	-				-0.2
3,389,481	-				-1.3
3,389,560	+				-1.2
3,389,560	+				+1.3
3,389,560	+				-0.5
3,389,560	+				-0.5
3,389,561	-				+0.2
3,389,662	+		LRK54_RS15355	0.11	+0.1
3,389,662	+		LRK54_RS15355	0.11	-0.3
3,389,662	+		LRK54_RS15355	0.11	-0.2
3,389,662	+		LRK54_RS15355	0.11	+0.4
3,389,663	-		LRK54_RS15355	0.11	+1.8
3,389,663	-		LRK54_RS15355	0.11	-1.3
3,389,663	-		LRK54_RS15355	0.11	-1.0
3,389,663	-		LRK54_RS15355	0.11	+0.0
3,389,663	-		LRK54_RS15355	0.11	-0.8
3,389,663	-		LRK54_RS15355	0.11	-1.2
3,389,677	+		LRK54_RS15355	0.13	-0.3
3,389,677	+		LRK54_RS15355	0.13	-0.2
3,389,686	+		LRK54_RS15355	0.15	-0.1
3,389,686	+		LRK54_RS15355	0.15	-0.1
3,389,686	+		LRK54_RS15355	0.15	-2.0
3,389,687	-		LRK54_RS15355	0.15	-0.6
3,389,687	-		LRK54_RS15355	0.15	-0.0
3,389,687	-		LRK54_RS15355	0.15	-1.2
3,389,687	-		LRK54_RS15355	0.15	-0.6
3,389,687	-		LRK54_RS15355	0.15	+0.7
3,389,732	+		LRK54_RS15355	0.21	-0.6
3,389,733	-		LRK54_RS15355	0.21	-0.6
3,389,733	-		LRK54_RS15355	0.21	-0.2
3,389,733	-		LRK54_RS15355	0.21	-2.6
3,389,740	+		LRK54_RS15355	0.22	-0.0
3,389,740	+		LRK54_RS15355	0.22	-1.4
3,389,740	+		LRK54_RS15355	0.22	+1.9
3,389,740	+		LRK54_RS15355	0.22	-0.2
3,389,740	+		LRK54_RS15355	0.22	-0.6
3,389,740	+		LRK54_RS15355	0.22	-0.5
3,389,740	+		LRK54_RS15355	0.22	+0.7
3,389,740	+		LRK54_RS15355	0.22	-1.9
3,389,740	+		LRK54_RS15355	0.22	-0.2
3,389,740	+		LRK54_RS15355	0.22	+0.3
3,389,740	+		LRK54_RS15355	0.22	+0.3
3,389,740	+		LRK54_RS15355	0.22	+0.4
3,389,740	+		LRK54_RS15355	0.22	-0.1
3,389,740	+		LRK54_RS15355	0.22	-0.6
3,389,740	+		LRK54_RS15355	0.22	-1.1
3,389,740	+		LRK54_RS15355	0.22	+1.1
3,389,740	+		LRK54_RS15355	0.22	+0.1
3,389,741	-		LRK54_RS15355	0.22	-0.5
3,389,741	-		LRK54_RS15355	0.22	+0.3
3,389,741	-		LRK54_RS15355	0.22	+0.1
3,389,741	-		LRK54_RS15355	0.22	-0.6
3,389,741	-		LRK54_RS15355	0.22	-0.9
3,389,741	-		LRK54_RS15355	0.22	+0.7
3,389,741	-		LRK54_RS15355	0.22	-0.2
3,389,741	-		LRK54_RS15355	0.22	-1.9
3,389,741	-		LRK54_RS15355	0.22	-0.5
3,389,741	-		LRK54_RS15355	0.22	+0.3
3,389,741	-		LRK54_RS15355	0.22	+1.4
3,389,741	-		LRK54_RS15355	0.22	-0.5
3,389,741	-		LRK54_RS15355	0.22	-0.2
3,389,741	-		LRK54_RS15355	0.22	+0.2
3,389,741	-		LRK54_RS15355	0.22	+0.1
3,389,741	-		LRK54_RS15355	0.22	-0.4
3,389,741	-		LRK54_RS15355	0.22	-0.0
3,389,830	+		LRK54_RS15355	0.35	-0.7
3,389,830	+		LRK54_RS15355	0.35	-1.1
3,389,830	+		LRK54_RS15355	0.35	+0.9
3,389,830	+		LRK54_RS15355	0.35	+1.3
3,389,830	+		LRK54_RS15355	0.35	-0.2
3,389,830	+		LRK54_RS15355	0.35	-0.9
3,389,830	+		LRK54_RS15355	0.35	-0.4
3,389,831	-		LRK54_RS15355	0.35	+0.3
3,389,831	-		LRK54_RS15355	0.35	-0.2
3,389,831	-		LRK54_RS15355	0.35	+0.4
3,389,831	-		LRK54_RS15355	0.35	-1.0
3,389,831	-		LRK54_RS15355	0.35	-0.2
3,389,831	-		LRK54_RS15355	0.35	-1.4
3,389,831	-		LRK54_RS15355	0.35	-0.9
3,389,831	-		LRK54_RS15355	0.35	-0.3
3,389,831	-		LRK54_RS15355	0.35	-0.5
3,389,831	-		LRK54_RS15355	0.35	-0.1
3,389,831	-		LRK54_RS15355	0.35	-0.0
3,389,839	+		LRK54_RS15355	0.36	-0.3
3,389,840	-		LRK54_RS15355	0.36	+0.2
3,389,840	-		LRK54_RS15355	0.36	+0.0
3,389,840	-		LRK54_RS15355	0.36	-0.2
3,389,840	-		LRK54_RS15355	0.36	+0.6
3,389,887	+		LRK54_RS15355	0.42	-0.0
3,389,887	+		LRK54_RS15355	0.42	+0.6
3,389,887	+		LRK54_RS15355	0.42	+0.1
3,389,887	+		LRK54_RS15355	0.42	+1.6
3,389,888	-		LRK54_RS15355	0.43	-1.0
3,389,888	-		LRK54_RS15355	0.43	-0.6
3,389,888	-		LRK54_RS15355	0.43	-0.0
3,389,888	-		LRK54_RS15355	0.43	-0.6
3,389,888	-		LRK54_RS15355	0.43	-0.9
3,389,932	+		LRK54_RS15355	0.49	-0.9
3,389,932	+		LRK54_RS15355	0.49	-0.4
3,389,932	+		LRK54_RS15355	0.49	-1.3
3,389,933	-		LRK54_RS15355	0.49	-0.3
3,389,933	-		LRK54_RS15355	0.49	+1.1
3,389,938	+		LRK54_RS15355	0.50	-0.5
3,389,938	+		LRK54_RS15355	0.50	-1.3
3,389,938	+		LRK54_RS15355	0.50	+0.7
3,389,938	+		LRK54_RS15355	0.50	-0.6
3,389,938	+		LRK54_RS15355	0.50	-0.1
3,389,938	+		LRK54_RS15355	0.50	+0.1
3,389,938	+		LRK54_RS15355	0.50	-0.5
3,389,939	-		LRK54_RS15355	0.50	-0.1
3,389,939	-		LRK54_RS15355	0.50	-0.6
3,389,939	-		LRK54_RS15355	0.50	+0.8
3,389,939	-		LRK54_RS15355	0.50	-0.9
3,389,939	-		LRK54_RS15355	0.50	-1.0
3,389,940	+		LRK54_RS15355	0.50	+0.2
3,389,941	-		LRK54_RS15355	0.50	+0.6
3,389,989	+		LRK54_RS15355	0.57	+0.8
3,389,989	+		LRK54_RS15355	0.57	-1.2
3,389,990	-		LRK54_RS15355	0.57	-0.3
3,389,990	-		LRK54_RS15355	0.57	-1.1
3,390,004	+		LRK54_RS15355	0.59	+0.0
3,390,005	-		LRK54_RS15355	0.59	-1.1
3,390,005	-		LRK54_RS15355	0.59	+0.4
3,390,005	-		LRK54_RS15355	0.59	+0.2
3,390,005	-		LRK54_RS15355	0.59	-0.4
3,390,041	+		LRK54_RS15355	0.64	-0.4
3,390,041	+		LRK54_RS15355	0.64	-0.7
3,390,042	-		LRK54_RS15355	0.64	+0.2
3,390,058	+		LRK54_RS15355	0.66	-0.8
3,390,058	+		LRK54_RS15355	0.66	+0.4
3,390,058	+		LRK54_RS15355	0.66	+0.2
3,390,059	-		LRK54_RS15355	0.66	-0.7
3,390,059	-		LRK54_RS15355	0.66	+1.0
3,390,059	-		LRK54_RS15355	0.66	-0.4
3,390,059	-		LRK54_RS15355	0.66	-0.8
3,390,073	-		LRK54_RS15355	0.68	-1.0
3,390,122	+		LRK54_RS15355	0.75	-0.4
3,390,122	+		LRK54_RS15355	0.75	+0.6
3,390,123	-		LRK54_RS15355	0.75	-0.5
3,390,123	-		LRK54_RS15355	0.75	-0.2
3,390,123	-		LRK54_RS15355	0.75	-0.2
3,390,123	-		LRK54_RS15355	0.75	-0.4
3,390,123	-		LRK54_RS15355	0.75	+0.3
3,390,157	+		LRK54_RS15355	0.80	+0.5
3,390,157	+		LRK54_RS15355	0.80	-0.3
3,390,157	+		LRK54_RS15355	0.80	-0.9
3,390,157	+		LRK54_RS15355	0.80	-0.4
3,390,158	-		LRK54_RS15355	0.80	-0.7
3,390,158	-		LRK54_RS15355	0.80	-1.6
3,390,158	-		LRK54_RS15355	0.80	-0.1
3,390,158	-		LRK54_RS15355	0.80	-0.2
3,390,158	-		LRK54_RS15355	0.80	+0.3
3,390,158	-		LRK54_RS15355	0.80	+0.8
3,390,158	-		LRK54_RS15355	0.80	-0.3
3,390,158	-		LRK54_RS15355	0.80	+0.6
3,390,158	-		LRK54_RS15355	0.80	-0.8
3,390,158	-		LRK54_RS15355	0.80	-0.8
3,390,158	-		LRK54_RS15355	0.80	-0.6
3,390,158	-		LRK54_RS15355	0.80	-0.1
3,390,158	-		LRK54_RS15355	0.80	+1.0
3,390,158	-		LRK54_RS15355	0.80	-0.5
3,390,158	-		LRK54_RS15355	0.80	-0.2
3,390,313	+				-1.1
3,390,313	+				+0.2
3,390,313	+				+0.6
3,390,313	+				-1.5
3,390,314	-				-0.3
3,390,314	-				+0.2
3,390,314	-				+1.7
3,390,461	+		LRK54_RS15360	0.14	-0.1
3,390,461	+		LRK54_RS15360	0.14	-0.1
3,390,461	+		LRK54_RS15360	0.14	+0.1
3,390,461	+		LRK54_RS15360	0.14	-0.7
3,390,462	-		LRK54_RS15360	0.14	-1.4
3,390,462	-		LRK54_RS15360	0.14	-0.2
3,390,462	-		LRK54_RS15360	0.14	-0.8
3,390,622	+		LRK54_RS15360	0.34	-1.0
3,390,623	-		LRK54_RS15360	0.34	+0.5
3,390,623	-		LRK54_RS15360	0.34	-0.3
3,390,819	+		LRK54_RS15360	0.58	-0.2
3,390,821	+		LRK54_RS15360	0.58	+0.3
3,390,822	-		LRK54_RS15360	0.59	+0.3
3,390,822	-		LRK54_RS15360	0.59	-0.9
3,390,822	-		LRK54_RS15360	0.59	-1.3
3,390,989	+		LRK54_RS15360	0.79	+0.9
3,391,132	-				-1.2
3,391,132	-				+0.2
3,391,132	-				+0.0
3,391,173	+				+0.7
3,391,173	+				+0.0
3,391,173	+				+0.4
3,391,173	+				+0.7
3,391,173	+				+0.2
3,391,173	+				+0.9
3,391,173	+				+0.5
3,391,173	+				+0.3
3,391,174	-				-1.0
3,391,174	-				+0.3
3,391,174	-				-0.9
3,391,174	-				-0.2
3,391,174	-				-0.4
3,391,174	-				-0.4
3,391,189	+				-0.3
3,391,189	+				-0.1
3,391,189	+				+0.1
3,391,189	+				-0.4
3,391,189	+				+0.4
3,391,189	+				+0.1
3,391,189	+				+1.1
3,391,189	+				+0.2
3,391,189	+				-0.3
3,391,189	+				+1.0
3,391,189	+				+1.7
3,391,190	-				+0.4
3,391,190	-				+0.6
3,391,190	-				+1.0
3,391,190	-				-0.9
3,391,190	-				+0.8
3,391,190	-				+0.5
3,391,190	-				-1.7
3,391,190	-				-0.2
3,391,190	-				+0.1
3,391,204	+				-1.0
3,391,204	+				+0.7
3,391,204	+				+0.3
3,391,205	-				+0.5
3,391,205	-				-0.8
3,391,205	-				-0.9
3,391,205	-				-0.8
3,391,219	+				-0.6
3,391,220	-				-1.3
3,391,220	-				+0.2
3,391,220	-				-1.1
3,391,223	+				-0.1
3,391,223	+				+1.8
3,391,223	+				-0.5
3,391,223	+				+0.5
3,391,223	+				+0.0
3,391,223	+				-0.3
3,391,224	-				-1.7
3,391,224	-				-0.6
3,391,224	-				+0.4
3,391,224	-				+0.9
3,391,224	-				+1.0
3,391,224	-				-0.0
3,391,230	+				-1.1