Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20420

Experiment: Xylitol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylitol (C)
4,673,910	-				+0.3
4,673,924	-				+0.0
4,673,924	-				-1.3
4,673,924	-				+0.9
4,673,934	-				-0.2
4,673,945	+				-1.2
4,673,945	-				+0.5
4,673,973	+				+0.5
4,673,981	-				+1.1
4,673,993	+				+0.7
4,674,046	-				+1.0
4,674,050	+				-0.1
4,674,058	+				-0.6
4,674,059	+				+0.0
4,674,067	-				+0.7
4,674,082	+				-1.0
4,674,114	+				-0.4
4,674,143	-				-0.9
4,674,158	-				-0.2
4,674,158	-				-1.1
4,674,226	-				-0.2
4,674,235	-				+0.5
4,674,239	+				+0.3
4,674,298	-				-1.8
4,674,298	-				-2.0
4,674,302	+				+0.3
4,674,346	+				-1.0
4,674,350	+				-2.2
4,674,358	-				+1.2
4,674,410	+				-0.0
4,674,410	+				-0.0
4,674,410	+				-1.1
4,674,418	-				-0.0
4,674,418	-				-1.4
4,674,418	-				+0.2
4,674,461	+				+0.8
4,674,461	-				-0.1
4,674,463	+				-0.3
4,674,463	+				+0.2
4,674,463	+				+0.0
4,674,466	+				+0.5
4,674,466	+				+0.4
4,674,466	+				+0.1
4,674,466	+				-1.1
4,674,466	+				+0.2
4,674,466	+				+0.5
4,674,469	-				+0.2
4,674,469	-				-1.6
4,674,469	-				-0.6
4,674,471	+				+0.1
4,674,471	-				-0.5
4,674,472	+				+0.6
4,674,472	+				+0.7
4,674,474	-				+0.7
4,674,474	-				+0.3
4,674,482	+				-0.3
4,674,488	+				-0.5
4,674,488	+				-0.9
4,674,490	+				-0.5
4,674,491	-				-0.3
4,674,491	-				+0.1
4,674,491	-				-0.9
4,674,491	-				-1.3
4,674,511	-				+0.3
4,674,551	+				-0.2
4,674,593	-				+0.5
4,674,597	-				-1.2
4,674,674	-				-1.6
4,674,674	-				-1.3
4,674,687	-				-0.6
4,674,689	+				-1.7
4,674,689	+				-1.0
4,674,707	-				-1.0
4,674,715	-				+0.4
4,674,729	+				-0.1
4,674,789	+				+0.3
4,674,814	-				+0.8
4,674,839	+				-0.1
4,674,840	+				-0.3
4,674,855	-				-0.4
4,674,870	+				-0.4
4,674,935	-				+0.3
4,675,007	-				-2.6
4,675,009	+				+0.4
4,675,009	+				+0.1
4,675,019	+				+0.3
4,675,019	+				+1.0
4,675,019	+				-1.2
4,675,027	-				-1.2
4,675,044	-				+0.7
4,675,071	+				-0.4
4,675,076	+				-0.1
4,675,076	+				-0.2
4,675,085	+				-0.9
4,675,093	+				+0.3
4,675,093	+				-1.3
4,675,101	-				-2.4
4,675,101	-				-1.6
4,675,101	-				-1.9
4,675,101	-				+1.0
4,675,101	-				+0.3
4,675,139	+				+1.5
4,675,185	+		HSERO_RS20420	0.14	+0.8
4,675,185	+		HSERO_RS20420	0.14	+0.7
4,675,213	+		HSERO_RS20420	0.15	+0.5
4,675,262	+		HSERO_RS20420	0.18	-1.3
4,675,268	-		HSERO_RS20420	0.18	+0.7
4,675,305	+		HSERO_RS20420	0.20	+1.1
4,675,305	+		HSERO_RS20420	0.20	-0.8
4,675,333	+		HSERO_RS20420	0.21	-0.5
4,675,333	+		HSERO_RS20420	0.21	-1.5
4,675,333	+		HSERO_RS20420	0.21	-0.1
4,675,348	-		HSERO_RS20420	0.22	+1.9
4,675,364	-		HSERO_RS20420	0.23	+1.9
4,675,373	+		HSERO_RS20420	0.23	+0.9
4,675,373	+		HSERO_RS20420	0.23	+2.3
4,675,373	+		HSERO_RS20420	0.23	+2.7
4,675,373	+		HSERO_RS20420	0.23	+0.2
4,675,373	+		HSERO_RS20420	0.23	-0.2
4,675,373	+		HSERO_RS20420	0.23	+3.1
4,675,373	+		HSERO_RS20420	0.23	-0.3
4,675,373	+		HSERO_RS20420	0.23	+0.9
4,675,373	+		HSERO_RS20420	0.23	+1.1
4,675,373	+		HSERO_RS20420	0.23	-0.6
4,675,378	+		HSERO_RS20420	0.24	-0.5
4,675,381	-		HSERO_RS20420	0.24	+0.5
4,675,381	-		HSERO_RS20420	0.24	-1.3
4,675,381	-		HSERO_RS20420	0.24	+1.8
4,675,381	-		HSERO_RS20420	0.24	+0.9
4,675,381	-		HSERO_RS20420	0.24	+1.8
4,675,381	-		HSERO_RS20420	0.24	-0.0
4,675,401	-		HSERO_RS20420	0.25	-0.1
4,675,411	+		HSERO_RS20420	0.25	+0.1
4,675,418	-		HSERO_RS20420	0.26	+0.0
4,675,418	-		HSERO_RS20420	0.26	-1.0
4,675,452	+		HSERO_RS20420	0.27	-0.1
4,675,452	+		HSERO_RS20420	0.27	-0.3
4,675,452	+		HSERO_RS20420	0.27	+0.4
4,675,452	+		HSERO_RS20420	0.27	+0.2
4,675,460	-		HSERO_RS20420	0.28	-1.2
4,675,460	-		HSERO_RS20420	0.28	+0.7
4,675,460	-		HSERO_RS20420	0.28	+0.2
4,675,460	-		HSERO_RS20420	0.28	+0.1
4,675,460	-		HSERO_RS20420	0.28	+2.1
4,675,464	+		HSERO_RS20420	0.28	-0.1
4,675,464	+		HSERO_RS20420	0.28	-0.4
4,675,472	-		HSERO_RS20420	0.28	-1.4
4,675,526	-		HSERO_RS20420	0.31	+1.5
4,675,590	-		HSERO_RS20420	0.34	+0.6
4,675,661	+		HSERO_RS20420	0.38	-0.3
4,675,669	-		HSERO_RS20420	0.38	-1.2
4,675,735	+		HSERO_RS20420	0.42	+0.7
4,675,787	-		HSERO_RS20420	0.44	-1.2
4,675,792	-		HSERO_RS20420	0.45	+0.5
4,675,845	+		HSERO_RS20420	0.47	-0.9
4,675,845	+		HSERO_RS20420	0.47	-0.2
4,675,851	-		HSERO_RS20420	0.48	+0.4
4,675,853	-		HSERO_RS20420	0.48	+0.7
4,675,853	-		HSERO_RS20420	0.48	+0.2
4,675,853	-		HSERO_RS20420	0.48	+1.4
4,675,853	-		HSERO_RS20420	0.48	-1.0
4,675,966	+		HSERO_RS20420	0.53	-0.0
4,675,966	+		HSERO_RS20420	0.53	-1.2
4,675,966	+		HSERO_RS20420	0.53	+0.2
4,675,974	-				-0.1
4,675,984	+		HSERO_RS20420	0.54	+0.2
4,676,123	-		HSERO_RS20420	0.61	-0.1
4,676,141	+		HSERO_RS20420	0.62	-0.2
4,676,215	+		HSERO_RS20420	0.66	+0.4
4,676,245	+		HSERO_RS20420	0.67	-0.1
4,676,263	-		HSERO_RS20420	0.68	+0.4
4,676,276	-		HSERO_RS20420	0.69	+0.3
4,676,280	+		HSERO_RS20420	0.69	-0.1
4,676,324	-		HSERO_RS20420	0.71	+0.9
4,676,351	+		HSERO_RS20420	0.73	+0.2
4,676,351	+		HSERO_RS20420	0.73	+0.0
4,676,370	+		HSERO_RS20420	0.74	+0.1
4,676,370	+		HSERO_RS20420	0.74	-0.2
4,676,370	+		HSERO_RS20420	0.74	+0.1
4,676,370	+		HSERO_RS20420	0.74	+1.0
4,676,370	+		HSERO_RS20420	0.74	+0.5
4,676,370	+		HSERO_RS20420	0.74	-0.2
4,676,370	+		HSERO_RS20420	0.74	+0.7
4,676,370	+				+0.5
4,676,378	-		HSERO_RS20420	0.74	-0.5
4,676,378	-		HSERO_RS20420	0.74	-2.4
4,676,378	-		HSERO_RS20420	0.74	+1.2
4,676,378	-		HSERO_RS20420	0.74	+1.0
4,676,378	-		HSERO_RS20420	0.74	+0.1
4,676,378	-		HSERO_RS20420	0.74	-0.0
4,676,424	+		HSERO_RS20420	0.76	+0.3
4,676,444	-		HSERO_RS20420	0.77	-1.4
4,676,449	-		HSERO_RS20420	0.78	-0.8
4,676,467	-		HSERO_RS20420	0.79	+0.6
4,676,482	-		HSERO_RS20420	0.79	+0.6
4,676,547	-		HSERO_RS20420	0.83	+0.2
4,676,564	+		HSERO_RS20420	0.84	+0.3
4,676,566	+		HSERO_RS20420	0.84	-0.9
4,676,574	-		HSERO_RS20420	0.84	+0.2
4,676,588	+		HSERO_RS20420	0.85	+0.3
4,676,642	-		HSERO_RS20420	0.87	+0.0
4,676,642	-		HSERO_RS20420	0.87	+3.1
4,676,693	+				-0.1
4,676,778	-				+0.0
4,676,780	+				+0.5
4,676,785	+				+0.5
4,676,788	-				-0.0
4,676,795	+				+0.4
4,676,805	+				+1.2
4,676,805	+				+0.0
4,676,813	-				-0.3
4,676,923	-				+1.0
4,676,936	-				-1.0
4,676,990	+				-0.0
4,677,010	+				-1.1
4,677,014	-				-0.6
4,677,018	-				-0.4
4,677,018	-				-1.3
4,677,020	+				+0.7
4,677,026	+				-0.9
4,677,028	-				-1.5
4,677,103	-				+0.1
4,677,112	-				-0.8
4,677,128	-				-0.0
4,677,142	+				-0.8
4,677,142	+				+1.1
4,677,142	+				+0.8
4,677,142	+				-2.1
4,677,143	-				+0.3
4,677,150	-				-0.9
4,677,150	-				+1.0
4,677,150	-				+0.2
4,677,150	-				+0.2
4,677,150	-				+0.6
4,677,186	+				-0.5
4,677,205	-				-0.5
4,677,257	+				+1.3
4,677,341	+				+1.5
4,677,356	-				-0.6
4,677,371	+				+1.2
4,677,404	-				-0.1
4,677,405	-				+0.5
4,677,433	-				+1.0
4,677,484	+				+0.2
4,677,484	-				-1.6
4,677,495	+		HSERO_RS20425	0.10	-1.2
4,677,495	+				+2.5
4,677,495	+		HSERO_RS20425	0.10	-0.5
4,677,503	-		HSERO_RS20425	0.10	-1.9
4,677,503	-		HSERO_RS20425	0.10	+0.7
4,677,572	+		HSERO_RS20425	0.12	-1.2
4,677,577	+		HSERO_RS20425	0.12	+1.3
4,677,577	+		HSERO_RS20425	0.12	-0.8
4,677,580	-		HSERO_RS20425	0.12	-0.5
4,677,585	-		HSERO_RS20425	0.12	+0.6
4,677,585	-		HSERO_RS20425	0.12	+0.5
4,677,591	+		HSERO_RS20425	0.12	-0.2
4,677,591	+		HSERO_RS20425	0.12	+0.0
4,677,592	+		HSERO_RS20425	0.13	-1.6
4,677,599	-		HSERO_RS20425	0.13	-0.3
4,677,599	-		HSERO_RS20425	0.13	-1.6
4,677,599	-		HSERO_RS20425	0.13	+0.5
4,677,600	-		HSERO_RS20425	0.13	-1.3
4,677,600	-		HSERO_RS20425	0.13	+0.5
4,677,600	-		HSERO_RS20425	0.13	+0.7
4,677,600	-		HSERO_RS20425	0.13	-0.8
4,677,611	-				-0.8
4,677,636	-		HSERO_RS20425	0.14	+0.2
4,677,653	+		HSERO_RS20425	0.14	-0.7
4,677,653	+		HSERO_RS20425	0.14	-2.0
4,677,653	+		HSERO_RS20425	0.14	-1.1
4,677,661	-		HSERO_RS20425	0.14	-0.7
4,677,661	-		HSERO_RS20425	0.14	-2.3
4,677,661	-		HSERO_RS20425	0.14	+0.8
4,677,661	-		HSERO_RS20425	0.14	-1.1
4,677,673	-		HSERO_RS20425	0.14	+0.5
4,677,693	+		HSERO_RS20425	0.15	-0.2
4,677,693	-		HSERO_RS20425	0.15	-0.4
4,677,693	-		HSERO_RS20425	0.15	-0.4
4,677,712	+		HSERO_RS20425	0.15	-2.9
4,677,732	-		HSERO_RS20425	0.16	-0.2
4,677,733	-		HSERO_RS20425	0.16	-0.9
4,677,733	-		HSERO_RS20425	0.16	-0.5
4,677,760	+		HSERO_RS20425	0.17	-0.5
4,677,777	+		HSERO_RS20425	0.17	+1.9
4,677,777	+		HSERO_RS20425	0.17	+1.3
4,677,785	-		HSERO_RS20425	0.17	-1.0
4,677,790	-		HSERO_RS20425	0.17	+0.2
4,677,821	+		HSERO_RS20425	0.18	-1.1
4,677,821	+		HSERO_RS20425	0.18	+1.1
4,677,821	+		HSERO_RS20425	0.18	-0.4
4,677,824	-		HSERO_RS20425	0.18	-0.8
4,677,829	-		HSERO_RS20425	0.18	+0.8
4,677,829	-		HSERO_RS20425	0.18	-1.2
4,677,829	-		HSERO_RS20425	0.18	-2.0
4,677,829	-		HSERO_RS20425	0.18	-2.9
4,677,829	-		HSERO_RS20425	0.18	-0.1
4,677,836	-		HSERO_RS20425	0.18	-1.9
4,677,836	-		HSERO_RS20425	0.18	-0.9
4,677,836	-		HSERO_RS20425	0.18	+0.7
4,677,836	-		HSERO_RS20425	0.18	+0.7
4,677,836	-		HSERO_RS20425	0.18	+0.3
4,677,836	-		HSERO_RS20425	0.18	+1.1