Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14650

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14645 and HSERO_RS14650 are separated by 239 nucleotidesHSERO_RS14650 and HSERO_RS14655 are separated by 20 nucleotides HSERO_RS14645: HSERO_RS14645 - inorganic pyrophosphatase, at 3,317,463 to 3,317,996 _RS14645 HSERO_RS14650: HSERO_RS14650 - porphyrin biosynthesis protein, at 3,318,236 to 3,319,435 _RS14650 HSERO_RS14655: HSERO_RS14655 - uroporphyrin-III C-methyltransferase, at 3,319,456 to 3,320,661 _RS14655 Position (kb) 3318 3319 3320Strain fitness (log2 ratio) -1 0 1at 3317.255 kb on - strandat 3317.320 kb on + strandat 3317.320 kb on + strandat 3318.254 kb on - strandat 3319.492 kb on - strandat 3319.706 kb on + strand, within HSERO_RS14655

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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3,317,255 - -1.0
3,317,320 + +0.5
3,317,320 + +0.3
3,318,254 - +0.3
3,319,492 - -0.9
3,319,706 + HSERO_RS14655 0.21 -0.1

Or see this region's nucleotide sequence