Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02445 and HSERO_RS02450 are separated by 45 nucleotides HSERO_RS02450 and HSERO_RS02455 are separated by 284 nucleotides HSERO_RS02455 and HSERO_RS02460 are separated by 139 nucleotides
HSERO_RS02445: HSERO_RS02445 - proteinase inhibitor, at 535,140 to 535,436
_RS02445
HSERO_RS02450: HSERO_RS02450 - arsenate reductase, at 535,482 to 535,835
_RS02450
HSERO_RS02455: HSERO_RS02455 - UDP pyrophosphate phosphatase, at 536,120 to 536,974
_RS02455
HSERO_RS02460: HSERO_RS02460 - UDP pyrophosphate phosphatase, at 537,114 to 537,986
_RS02460
Position (kb) 536
537 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.251 kb on + strand, within HSERO_RS02445 at 535.256 kb on + strand, within HSERO_RS02445 at 535.400 kb on - strand, within HSERO_RS02445 at 535.532 kb on + strand, within HSERO_RS02450 at 535.662 kb on - strand, within HSERO_RS02450 at 535.849 kb on - strand at 535.949 kb on + strand at 535.983 kb on + strand at 535.983 kb on + strand at 536.174 kb on + strand at 536.241 kb on + strand, within HSERO_RS02455 at 536.241 kb on + strand, within HSERO_RS02455 at 536.241 kb on + strand, within HSERO_RS02455 at 536.313 kb on + strand, within HSERO_RS02455 at 536.420 kb on + strand, within HSERO_RS02455 at 536.539 kb on - strand, within HSERO_RS02455 at 536.615 kb on + strand, within HSERO_RS02455 at 536.615 kb on + strand, within HSERO_RS02455 at 536.623 kb on - strand, within HSERO_RS02455 at 536.810 kb on + strand, within HSERO_RS02455 at 536.874 kb on - strand, within HSERO_RS02455 at 536.967 kb on - strand at 537.036 kb on - strand at 537.190 kb on - strand at 537.200 kb on - strand at 537.636 kb on - strand, within HSERO_RS02460 at 537.759 kb on + strand, within HSERO_RS02460 at 537.823 kb on - strand, within HSERO_RS02460 at 537.842 kb on + strand, within HSERO_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 535,251 + HSERO_RS02445 0.37 +1.6 535,256 + HSERO_RS02445 0.39 +1.8 535,400 - HSERO_RS02445 0.88 +0.3 535,532 + HSERO_RS02450 0.14 +1.5 535,662 - HSERO_RS02450 0.51 +1.2 535,849 - -1.0 535,949 + -0.6 535,983 + -1.7 535,983 + +2.1 536,174 + +0.7 536,241 + HSERO_RS02455 0.14 -0.2 536,241 + HSERO_RS02455 0.14 -1.2 536,241 + HSERO_RS02455 0.14 -0.3 536,313 + HSERO_RS02455 0.23 +0.6 536,420 + HSERO_RS02455 0.35 +0.1 536,539 - HSERO_RS02455 0.49 +0.1 536,615 + HSERO_RS02455 0.58 +0.5 536,615 + HSERO_RS02455 0.58 -2.4 536,623 - HSERO_RS02455 0.59 +0.5 536,810 + HSERO_RS02455 0.81 +1.6 536,874 - HSERO_RS02455 0.88 -0.3 536,967 - +0.3 537,036 - -0.9 537,190 - -0.1 537,200 - -0.1 537,636 - HSERO_RS02460 0.60 -1.6 537,759 + HSERO_RS02460 0.74 -1.8 537,823 - HSERO_RS02460 0.81 -0.2 537,842 + HSERO_RS02460 0.83 +0.6
Or see this region's nucleotide sequence