Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01485 and HSERO_RS01490 are separated by 179 nucleotides HSERO_RS01490 and HSERO_RS01495 are separated by 600 nucleotides
HSERO_RS01485: HSERO_RS01485 - hypothetical protein, at 319,906 to 320,748
_RS01485
HSERO_RS01490: HSERO_RS01490 - guanylate cyclase, at 320,928 to 323,201
_RS01490
HSERO_RS01495: HSERO_RS01495 - Fe-S osidoreductase, at 323,802 to 325,328
_RS01495
Position (kb) 320
321
322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.961 kb on + strand at 320.033 kb on - strand, within HSERO_RS01485 at 320.069 kb on + strand, within HSERO_RS01485 at 320.099 kb on + strand, within HSERO_RS01485 at 320.224 kb on + strand, within HSERO_RS01485 at 320.325 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.592 kb on - strand, within HSERO_RS01485 at 320.648 kb on + strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.777 kb on + strand at 320.814 kb on + strand at 321.009 kb on + strand at 321.010 kb on - strand at 321.014 kb on + strand at 321.232 kb on + strand, within HSERO_RS01490 at 321.265 kb on + strand, within HSERO_RS01490 at 321.336 kb on + strand, within HSERO_RS01490 at 321.734 kb on + strand, within HSERO_RS01490 at 321.848 kb on + strand at 321.961 kb on - strand, within HSERO_RS01490 at 322.009 kb on + strand, within HSERO_RS01490 at 322.487 kb on + strand, within HSERO_RS01490 at 322.595 kb on + strand, within HSERO_RS01490 at 322.713 kb on + strand, within HSERO_RS01490 at 322.852 kb on - strand, within HSERO_RS01490 at 322.917 kb on + strand, within HSERO_RS01490 at 322.942 kb on - strand, within HSERO_RS01490 at 322.990 kb on + strand at 323.039 kb on + strand at 323.166 kb on + strand at 323.184 kb on - strand at 323.200 kb on - strand at 323.200 kb on - strand at 323.218 kb on + strand at 323.229 kb on - strand at 323.238 kb on - strand at 323.346 kb on + strand at 323.369 kb on - strand at 323.492 kb on - strand at 323.657 kb on + strand at 323.665 kb on - strand at 323.762 kb on + strand at 323.766 kb on - strand at 323.770 kb on - strand at 323.813 kb on + strand at 323.821 kb on - strand at 323.835 kb on + strand at 323.976 kb on - strand, within HSERO_RS01495 at 324.140 kb on + strand, within HSERO_RS01495
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 319,961 + -0.2 320,033 - HSERO_RS01485 0.15 -3.0 320,069 + HSERO_RS01485 0.19 -0.3 320,099 + HSERO_RS01485 0.23 +0.4 320,224 + HSERO_RS01485 0.38 +1.1 320,325 + HSERO_RS01485 0.50 +0.3 320,445 + HSERO_RS01485 0.64 -0.6 320,445 + HSERO_RS01485 0.64 +0.2 320,592 - HSERO_RS01485 0.81 -0.5 320,648 + HSERO_RS01485 0.88 +0.9 320,656 - HSERO_RS01485 0.89 +0.4 320,656 - HSERO_RS01485 0.89 +0.1 320,777 + +0.3 320,814 + -0.8 321,009 + +0.1 321,010 - -1.8 321,014 + +2.2 321,232 + HSERO_RS01490 0.13 +0.5 321,265 + HSERO_RS01490 0.15 -0.5 321,336 + HSERO_RS01490 0.18 -0.3 321,734 + HSERO_RS01490 0.35 +0.2 321,848 + -0.6 321,961 - HSERO_RS01490 0.45 +0.2 322,009 + HSERO_RS01490 0.48 -0.3 322,487 + HSERO_RS01490 0.69 +0.5 322,595 + HSERO_RS01490 0.73 -1.3 322,713 + HSERO_RS01490 0.78 +1.0 322,852 - HSERO_RS01490 0.85 +0.0 322,917 + HSERO_RS01490 0.87 -1.3 322,942 - HSERO_RS01490 0.89 +0.4 322,990 + +0.9 323,039 + +0.4 323,166 + -0.3 323,184 - -1.2 323,200 - -0.1 323,200 - -0.3 323,218 + -0.8 323,229 - +0.3 323,238 - +0.2 323,346 + -2.1 323,369 - -0.4 323,492 - +0.8 323,657 + +0.1 323,665 - +0.8 323,762 + -0.8 323,766 - +2.2 323,770 - +0.1 323,813 + -0.3 323,821 - -0.3 323,835 + -0.6 323,976 - HSERO_RS01495 0.11 -0.3 324,140 + HSERO_RS01495 0.22 -0.6
Or see this region's nucleotide sequence